Wall clock time and date at job start Wed Apr 1 2020 00:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46705 * 2 1 4 4 H 1.08996 * 109.47185 * 55.00434 * 3 2 1 5 5 C 1.53004 * 109.46907 * 175.00065 * 3 2 1 6 6 O 1.42902 * 109.47455 * 295.00292 * 3 2 1 7 7 C 1.42895 * 114.00240 * 150.00516 * 6 3 2 8 8 C 1.50696 * 109.47085 * 180.02562 * 7 6 3 9 9 O 1.21277 * 120.00193 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99812 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00199 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47593 * 185.05615 * 11 10 8 13 13 H 1.09005 * 110.01090 * 303.56923 * 12 11 10 14 14 C 1.54319 * 109.89131 * 64.68146 * 12 11 10 15 15 C 1.55429 * 103.04953 * 141.69366 * 14 12 11 16 16 C 1.54913 * 101.51891 * 324.36553 * 15 14 12 17 17 N 1.47445 * 109.89160 * 182.45231 * 12 11 10 18 18 C 1.46896 * 110.99765 * 3.85366 * 17 12 11 19 19 C 1.50701 * 109.46947 * 172.06416 * 18 17 12 20 20 O 1.21284 * 120.00141 * 359.97438 * 19 18 17 21 21 N 1.34781 * 119.99686 * 179.97438 * 19 18 17 22 22 C 1.37105 * 119.99633 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00163 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99775 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99997 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99754 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47390 * 90.00147 * 26 24 22 28 28 H 1.48504 * 109.46902 * 209.99739 * 26 24 22 29 29 H 1.48489 * 109.47088 * 330.00001 * 26 24 22 30 30 H 1.09002 * 109.47229 * 299.99844 * 1 2 3 31 31 H 1.08993 * 109.47129 * 59.99807 * 1 2 3 32 32 H 1.08995 * 109.46837 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46479 * 240.00612 * 2 1 3 34 34 H 1.08993 * 109.47129 * 120.00193 * 2 1 3 35 35 H 1.08995 * 109.47058 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.46827 * 300.00215 * 5 3 2 37 37 H 1.09006 * 109.46988 * 60.00120 * 5 3 2 38 38 H 1.09001 * 109.47291 * 59.99514 * 7 6 3 39 39 H 1.09004 * 109.46808 * 299.99507 * 7 6 3 40 40 H 0.96999 * 120.00503 * 0.02562 * 10 8 7 41 41 H 1.09002 * 109.47155 * 65.05260 * 11 10 8 42 42 H 1.08998 * 109.46970 * 305.05913 * 11 10 8 43 43 H 1.08996 * 110.70633 * 260.07550 * 14 12 11 44 44 H 1.09004 * 110.70169 * 23.31035 * 14 12 11 45 45 H 1.09001 * 111.10601 * 206.30343 * 15 14 12 46 46 H 1.09000 * 111.00403 * 82.38913 * 15 14 12 47 47 H 1.08995 * 110.37595 * 278.17997 * 16 15 14 48 48 H 1.08999 * 110.37541 * 155.94575 * 16 15 14 49 49 H 1.09003 * 109.46640 * 292.05838 * 18 17 12 50 50 H 1.08998 * 109.47735 * 52.05926 * 18 17 12 51 51 H 0.96994 * 120.00269 * 359.97438 * 21 19 18 52 52 H 0.96994 * 120.00061 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6618 2.0815 -1.2210 7 6 1.4558 3.4904 -1.1002 8 6 1.0625 4.0572 -2.4400 9 8 0.9683 3.3267 -3.4035 10 7 0.8153 5.3759 -2.5674 11 6 0.4335 5.9271 -3.8700 12 6 0.3350 7.4506 -3.7701 13 1 -0.3690 7.7283 -2.9856 14 6 1.7246 8.0476 -3.4637 15 6 1.7443 9.3467 -4.3168 16 6 0.9549 8.9034 -5.5738 17 7 -0.1060 8.0105 -5.0609 18 6 -0.4057 6.9419 -6.0233 19 6 -1.0349 7.5382 -7.2561 20 8 -1.2162 8.7354 -7.3258 21 7 -1.3960 6.7410 -8.2810 22 6 -1.9689 7.2834 -9.4024 23 1 -2.1304 8.3494 -9.4645 24 6 -2.3408 6.4616 -10.4593 25 7 -2.1429 5.1646 -10.3843 26 14 -3.1207 7.2007 -11.9873 27 1 -2.0587 7.5560 -12.9627 28 1 -4.0441 6.2118 -12.5995 29 1 -3.8791 8.4217 -11.6147 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9280 2.4721 0.1262 36 1 3.8531 0.9571 1.0570 37 1 3.9994 0.9054 -0.7162 38 1 2.3768 3.9645 -0.7609 39 1 0.6617 3.6808 -0.3783 40 1 0.8910 5.9603 -1.7970 41 1 -0.5324 5.5193 -4.1681 42 1 1.1854 5.6595 -4.6123 43 1 1.8182 8.2818 -2.4033 44 1 2.5149 7.3669 -3.7804 45 1 2.7643 9.6305 -4.5763 46 1 1.2334 10.1602 -3.8017 47 1 1.6067 8.3630 -6.2602 48 1 0.5155 9.7684 -6.0706 49 1 0.5171 6.4306 -6.2974 50 1 -1.0956 6.2291 -5.5717 51 1 -1.2507 5.7836 -8.2254 52 1 -2.4028 4.5909 -11.1220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567361259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:33 Heat of formation + Delta-G solvation = -114.955834 kcal Electronic energy + Delta-G solvation = -30105.343410 eV Core-core repulsion = 25911.970381 eV Total energy + Delta-G solvation = -4193.373029 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.30203 -39.43104 -38.38414 -37.54143 -34.75391 -34.11388 -33.85114 -32.09351 -31.08607 -30.50732 -30.12649 -27.96662 -26.69261 -24.83724 -24.21930 -23.92474 -21.44422 -21.38825 -20.69899 -20.17719 -18.96079 -17.85845 -17.47457 -17.22133 -16.70422 -16.39388 -15.50582 -15.43880 -15.35876 -14.88329 -14.60114 -14.50261 -14.36350 -14.15548 -13.89498 -13.77685 -13.60601 -13.33391 -13.09916 -12.93970 -12.69679 -12.45660 -12.31038 -12.00645 -11.98015 -11.72928 -11.68457 -11.43182 -11.34726 -11.17516 -11.03394 -10.94692 -10.92540 -10.88190 -10.62425 -10.35056 -10.16653 -9.99725 -9.93750 -9.44713 -9.20738 -8.42676 -7.92897 -7.86096 -6.35709 -3.76778 2.45869 2.54066 3.21483 3.29830 3.35757 3.62071 3.94962 4.04212 4.26656 4.34982 4.46179 4.55467 4.58440 4.63120 4.70744 4.73867 4.76677 4.84707 4.97541 5.15071 5.17195 5.18291 5.25362 5.25601 5.28592 5.31457 5.40013 5.56922 5.62493 5.65583 5.66474 5.72610 5.76202 5.80741 5.81016 5.84930 5.97188 6.03380 6.05497 6.20755 6.27366 6.34450 6.49527 6.76052 7.20040 7.24330 7.29857 7.60380 8.06340 8.11604 8.67515 9.23541 9.60465 10.12124 10.82008 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.002232 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.767208 B =12543.418358 C =14612.781534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.177 4.177 6 O -0.353 6.353 7 C 0.045 3.955 8 C 0.510 3.490 9 O -0.512 6.512 10 N -0.726 5.726 11 C 0.101 3.899 12 C 0.062 3.938 13 H 0.091 0.909 14 C -0.139 4.139 15 C -0.130 4.130 16 C 0.051 3.949 17 N -0.492 5.492 18 C 0.031 3.969 19 C 0.444 3.556 20 O -0.579 6.579 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.399 0.601 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.042 0.958 48 H 0.097 0.903 49 H 0.052 0.948 50 H 0.094 0.906 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.161 -4.845 25.639 28.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C 0.025 3.975 4 H 0.079 0.921 5 C -0.234 4.234 6 O -0.271 6.271 7 C -0.035 4.035 8 C 0.294 3.706 9 O -0.386 6.386 10 N -0.381 5.381 11 C -0.023 4.023 12 C -0.047 4.047 13 H 0.109 0.891 14 C -0.177 4.177 15 C -0.168 4.168 16 C -0.077 4.077 17 N -0.216 5.216 18 C -0.101 4.101 19 C 0.229 3.771 20 O -0.463 6.463 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.205 1.205 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.233 0.767 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.060 0.940 48 H 0.115 0.885 49 H 0.070 0.930 50 H 0.112 0.888 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.423 -4.564 24.597 27.102 hybrid contribution 0.527 -0.421 -0.273 0.728 sum 10.951 -4.985 24.324 27.137 Atomic orbital electron populations 1.21749 0.95203 1.01845 1.02289 1.21628 0.96818 0.94533 1.02819 1.22246 0.94315 0.94310 0.86624 0.92066 1.22315 0.96044 1.02430 1.02655 1.88084 1.89363 1.17718 1.31975 1.22209 1.01343 0.84436 0.95494 1.20251 0.77796 0.82213 0.90344 1.90785 1.49468 1.58373 1.39954 1.45820 1.71515 1.08073 1.12650 1.22225 1.01674 0.93776 0.84661 1.22751 0.96190 0.91115 0.94681 0.89102 1.22948 0.96675 0.97660 1.00457 1.22789 1.00271 0.97208 0.96568 1.23088 0.91054 0.97945 0.95569 1.63502 1.40184 1.16612 1.01342 1.22233 1.00301 0.93849 0.93683 1.19697 0.85079 0.87634 0.84654 1.90496 1.59382 1.14919 1.81488 1.41866 1.54070 1.09525 1.14678 1.19682 1.35644 0.94851 0.92602 0.87940 1.25270 0.98015 0.95201 0.99549 1.69621 1.47966 1.03191 1.33427 0.85864 0.78863 0.78614 0.80973 1.20475 1.20948 1.19437 0.93132 0.91644 0.92617 0.90805 0.90703 0.92493 0.91521 0.91477 0.90508 0.90358 0.76716 0.90231 0.90780 0.90958 0.91290 0.91014 0.90652 0.93985 0.88477 0.92986 0.88831 0.77451 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.81 37.16 0.36 -0.80 16 2 C -0.12 -0.85 5.64 -26.73 -0.15 -1.01 16 3 C 0.08 0.61 2.72 -26.73 -0.07 0.53 16 4 H 0.06 0.34 7.79 -51.93 -0.40 -0.06 16 5 C -0.18 -1.10 9.53 37.16 0.35 -0.74 16 6 O -0.35 -3.80 9.06 -55.14 -0.50 -4.30 16 7 C 0.05 0.37 6.23 36.00 0.22 0.60 16 8 C 0.51 6.04 7.91 -10.99 -0.09 5.96 16 9 O -0.51 -8.90 16.49 -14.35 -0.24 -9.14 16 10 N -0.73 -6.84 5.33 -60.30 -0.32 -7.16 16 11 C 0.10 1.22 3.75 -4.05 -0.02 1.21 16 12 C 0.06 0.72 3.51 -66.73 -0.23 0.49 16 13 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 14 C -0.14 -1.33 6.10 -24.75 -0.15 -1.48 16 15 C -0.13 -1.46 7.10 -24.43 -0.17 -1.63 16 16 C 0.05 0.80 5.66 -2.29 -0.01 0.78 16 17 N -0.49 -8.02 4.90 -224.78 -1.10 -9.12 16 18 C 0.03 0.56 4.17 -4.98 -0.02 0.54 16 19 C 0.44 10.71 7.56 -10.98 -0.08 10.63 16 20 O -0.58 -15.72 14.45 5.55 0.08 -15.64 16 21 N -0.56 -14.75 5.29 -10.96 -0.06 -14.80 16 22 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 23 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -25.28 13.05 55.50 0.72 -24.55 16 26 Si 0.93 21.52 29.55 -169.99 -5.02 16.50 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.64 7.82 -51.93 -0.41 0.23 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.33 7.87 -51.93 -0.41 -0.08 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.43 7.87 -51.93 -0.41 0.03 16 39 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 40 H 0.40 2.33 8.34 -40.82 -0.34 1.99 16 41 H 0.08 1.11 6.22 -51.93 -0.32 0.78 16 42 H 0.07 1.03 7.02 -51.93 -0.36 0.67 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.68 7.81 -51.93 -0.41 0.27 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.04 0.69 7.66 -51.93 -0.40 0.29 16 48 H 0.10 1.79 7.27 -51.93 -0.38 1.41 16 49 H 0.05 0.91 6.85 -51.93 -0.36 0.55 16 50 H 0.09 1.61 6.12 -51.93 -0.32 1.29 16 51 H 0.39 9.96 7.90 -40.82 -0.32 9.63 16 52 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 415.82 15.07 6.27 6.27 Total: -1.00 -35.54 415.82 -9.46 -44.99 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -8.99 Total: 10.01 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.30 Total: 6.94 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.76 Total: -55.63 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.66 Total: -29.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.54 -9.46 -44.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567361259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.961 kcal (2) G-P(sol) polarization free energy of solvation -35.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds