Wall clock time and date at job start Wed Apr 1 2020 00:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46705 * 2 1 4 4 H 1.08996 * 109.47185 * 55.00434 * 3 2 1 5 5 C 1.53004 * 109.46907 * 175.00065 * 3 2 1 6 6 O 1.42902 * 109.47455 * 295.00292 * 3 2 1 7 7 C 1.42895 * 114.00240 * 150.00516 * 6 3 2 8 8 C 1.50696 * 109.47085 * 180.02562 * 7 6 3 9 9 O 1.21277 * 120.00193 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99812 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00199 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47593 * 185.05615 * 11 10 8 13 13 H 1.09005 * 110.01090 * 303.56923 * 12 11 10 14 14 C 1.54319 * 109.89131 * 64.68146 * 12 11 10 15 15 C 1.55429 * 103.04953 * 141.69366 * 14 12 11 16 16 C 1.54913 * 101.51891 * 324.36553 * 15 14 12 17 17 N 1.47445 * 109.89160 * 182.45231 * 12 11 10 18 18 C 1.46896 * 110.99765 * 3.85366 * 17 12 11 19 19 C 1.50701 * 109.46947 * 172.06416 * 18 17 12 20 20 O 1.21284 * 120.00141 * 359.97438 * 19 18 17 21 21 N 1.34781 * 119.99686 * 179.97438 * 19 18 17 22 22 C 1.37105 * 119.99633 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00163 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99775 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99997 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99754 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47390 * 90.00147 * 26 24 22 28 28 H 1.48504 * 109.46902 * 209.99739 * 26 24 22 29 29 H 1.48489 * 109.47088 * 330.00001 * 26 24 22 30 30 H 1.09002 * 109.47229 * 299.99844 * 1 2 3 31 31 H 1.08993 * 109.47129 * 59.99807 * 1 2 3 32 32 H 1.08995 * 109.46837 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46479 * 240.00612 * 2 1 3 34 34 H 1.08993 * 109.47129 * 120.00193 * 2 1 3 35 35 H 1.08995 * 109.47058 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.46827 * 300.00215 * 5 3 2 37 37 H 1.09006 * 109.46988 * 60.00120 * 5 3 2 38 38 H 1.09001 * 109.47291 * 59.99514 * 7 6 3 39 39 H 1.09004 * 109.46808 * 299.99507 * 7 6 3 40 40 H 0.96999 * 120.00503 * 0.02562 * 10 8 7 41 41 H 1.09002 * 109.47155 * 65.05260 * 11 10 8 42 42 H 1.08998 * 109.46970 * 305.05913 * 11 10 8 43 43 H 1.08996 * 110.70633 * 260.07550 * 14 12 11 44 44 H 1.09004 * 110.70169 * 23.31035 * 14 12 11 45 45 H 1.09001 * 111.10601 * 206.30343 * 15 14 12 46 46 H 1.09000 * 111.00403 * 82.38913 * 15 14 12 47 47 H 1.08995 * 110.37595 * 278.17997 * 16 15 14 48 48 H 1.08999 * 110.37541 * 155.94575 * 16 15 14 49 49 H 1.09003 * 109.46640 * 292.05838 * 18 17 12 50 50 H 1.08998 * 109.47735 * 52.05926 * 18 17 12 51 51 H 0.96994 * 120.00269 * 359.97438 * 21 19 18 52 52 H 0.96994 * 120.00061 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6618 2.0815 -1.2210 7 6 1.4558 3.4904 -1.1002 8 6 1.0625 4.0572 -2.4400 9 8 0.9683 3.3267 -3.4035 10 7 0.8153 5.3759 -2.5674 11 6 0.4335 5.9271 -3.8700 12 6 0.3350 7.4506 -3.7701 13 1 -0.3690 7.7283 -2.9856 14 6 1.7246 8.0476 -3.4637 15 6 1.7443 9.3467 -4.3168 16 6 0.9549 8.9034 -5.5738 17 7 -0.1060 8.0105 -5.0609 18 6 -0.4057 6.9419 -6.0233 19 6 -1.0349 7.5382 -7.2561 20 8 -1.2162 8.7354 -7.3258 21 7 -1.3960 6.7410 -8.2810 22 6 -1.9689 7.2834 -9.4024 23 1 -2.1304 8.3494 -9.4645 24 6 -2.3408 6.4616 -10.4593 25 7 -2.1429 5.1646 -10.3843 26 14 -3.1207 7.2007 -11.9873 27 1 -2.0587 7.5560 -12.9627 28 1 -4.0441 6.2118 -12.5995 29 1 -3.8791 8.4217 -11.6147 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9280 2.4721 0.1262 36 1 3.8531 0.9571 1.0570 37 1 3.9994 0.9054 -0.7162 38 1 2.3768 3.9645 -0.7609 39 1 0.6617 3.6808 -0.3783 40 1 0.8910 5.9603 -1.7970 41 1 -0.5324 5.5193 -4.1681 42 1 1.1854 5.6595 -4.6123 43 1 1.8182 8.2818 -2.4033 44 1 2.5149 7.3669 -3.7804 45 1 2.7643 9.6305 -4.5763 46 1 1.2334 10.1602 -3.8017 47 1 1.6067 8.3630 -6.2602 48 1 0.5155 9.7684 -6.0706 49 1 0.5171 6.4306 -6.2974 50 1 -1.0956 6.2291 -5.5717 51 1 -1.2507 5.7836 -8.2254 52 1 -2.4028 4.5909 -11.1220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567361259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:32 Heat of formation + Delta-G solvation = -142.379475 kcal Electronic energy + Delta-G solvation = -30106.532588 eV Core-core repulsion = 25911.970381 eV Total energy + Delta-G solvation = -4194.562207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.36883 -40.55995 -39.44668 -38.97454 -36.03633 -35.66591 -34.71527 -33.51903 -32.99958 -31.42503 -30.72961 -28.74237 -28.33163 -26.11376 -25.76331 -24.48261 -22.52310 -21.95692 -21.65717 -21.46359 -20.58289 -19.82492 -18.34980 -18.16227 -17.88929 -17.17339 -16.98010 -16.66266 -16.36057 -16.30635 -16.00231 -15.70504 -15.61400 -15.33210 -14.90289 -14.77910 -14.44483 -14.42208 -14.18443 -14.01928 -13.69441 -13.60742 -13.46815 -13.34928 -12.99012 -12.92725 -12.77481 -12.55921 -12.43723 -12.29515 -12.24201 -12.12875 -11.98141 -11.93871 -11.90790 -11.59344 -11.49682 -11.45435 -10.92252 -10.56858 -10.35340 -10.13597 -10.03445 -9.26484 -8.47708 -5.97399 1.36353 1.39312 1.53191 1.57180 1.77648 2.01901 2.26838 2.74731 3.04277 3.17553 3.33332 3.52281 3.71188 3.76076 3.83573 3.94087 4.07950 4.15840 4.21032 4.21506 4.23384 4.24656 4.34205 4.36754 4.41265 4.44868 4.55043 4.58485 4.68741 4.73565 4.76974 4.84535 4.95072 5.03995 5.06445 5.06861 5.11384 5.21880 5.22970 5.28876 5.31740 5.38635 5.39001 5.44300 5.82072 5.99592 6.10182 6.20421 6.56687 6.57726 7.10437 7.24435 7.53257 8.08440 8.69968 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.002232 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.767208 B =12543.418358 C =14612.781534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.078 3.922 4 H 0.086 0.914 5 C -0.175 4.175 6 O -0.392 6.392 7 C 0.048 3.952 8 C 0.504 3.496 9 O -0.579 6.579 10 N -0.704 5.704 11 C 0.108 3.892 12 C 0.066 3.934 13 H 0.112 0.888 14 C -0.127 4.127 15 C -0.119 4.119 16 C 0.045 3.955 17 N -0.512 5.512 18 C 0.048 3.952 19 C 0.441 3.559 20 O -0.612 6.612 21 N -0.577 5.577 22 C -0.332 4.332 23 H 0.081 0.919 24 C -0.017 4.017 25 N -0.924 5.924 26 Si 0.996 3.004 27 H -0.270 1.270 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.066 0.934 31 H 0.036 0.964 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.422 0.578 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.114 0.886 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.027 0.973 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.105 0.895 51 H 0.393 0.607 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.129 -4.415 28.811 31.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C 0.021 3.979 4 H 0.104 0.896 5 C -0.232 4.232 6 O -0.312 6.312 7 C -0.031 4.031 8 C 0.291 3.709 9 O -0.457 6.457 10 N -0.360 5.360 11 C -0.017 4.017 12 C -0.042 4.042 13 H 0.130 0.870 14 C -0.165 4.165 15 C -0.157 4.157 16 C -0.082 4.082 17 N -0.236 5.236 18 C -0.083 4.083 19 C 0.228 3.772 20 O -0.497 6.497 21 N -0.214 5.214 22 C -0.461 4.461 23 H 0.099 0.901 24 C -0.216 4.216 25 N -0.565 5.565 26 Si 0.820 3.180 27 H -0.195 1.195 28 H -0.196 1.196 29 H -0.195 1.195 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.260 0.740 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.132 0.868 44 H 0.087 0.913 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.045 0.955 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.123 0.877 51 H 0.227 0.773 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.410 -4.111 27.838 30.365 hybrid contribution 0.226 -0.539 -1.200 1.335 sum 11.636 -4.650 26.637 29.438 Atomic orbital electron populations 1.21726 0.95711 1.01882 1.01587 1.21683 0.96373 0.94984 1.02954 1.22443 0.95068 0.94130 0.86227 0.89595 1.22305 0.95189 1.02880 1.02819 1.88054 1.89825 1.19132 1.34170 1.22354 1.03885 0.83576 0.93270 1.21079 0.76415 0.82229 0.91162 1.90761 1.52520 1.60023 1.42414 1.45566 1.70177 1.07851 1.12358 1.21925 0.99952 0.94129 0.85709 1.22850 0.98345 0.90453 0.92511 0.87050 1.22946 0.94741 0.96235 1.02584 1.22747 1.00388 0.98256 0.94267 1.23030 0.91069 0.96483 0.97663 1.63422 1.41430 1.16412 1.02379 1.22012 1.00325 0.94264 0.91706 1.20720 0.83697 0.87201 0.85582 1.90466 1.60382 1.16506 1.82390 1.41973 1.54728 1.09689 1.15002 1.19681 1.37768 0.94273 0.94386 0.90068 1.26125 0.97873 0.95561 1.02084 1.69699 1.48172 1.04115 1.34477 0.84881 0.78169 0.77908 0.77085 1.19542 1.19558 1.19541 0.91536 0.94484 0.92303 0.92885 0.88309 0.91718 0.89572 0.93410 0.87182 0.87182 0.74032 0.92383 0.92842 0.86774 0.91281 0.89286 0.89738 0.95463 0.92160 0.92178 0.87665 0.77331 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.81 71.98 0.71 -1.47 16 2 C -0.12 -1.60 5.64 30.60 0.17 -1.43 16 3 C 0.08 0.98 2.72 30.60 0.08 1.06 16 4 H 0.09 0.63 7.79 -2.39 -0.02 0.61 16 5 C -0.17 -1.77 9.53 71.98 0.69 -1.09 16 6 O -0.39 -8.02 9.06 -129.94 -1.18 -9.20 16 7 C 0.05 0.66 6.23 71.23 0.44 1.10 16 8 C 0.50 11.37 7.91 87.66 0.69 12.06 16 9 O -0.58 -20.71 16.49 16.02 0.26 -20.44 16 10 N -0.70 -11.63 5.33 -463.08 -2.47 -14.10 16 11 C 0.11 2.53 3.75 86.38 0.32 2.85 16 12 C 0.07 1.41 3.51 45.26 0.16 1.57 16 13 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 14 C -0.13 -1.96 6.10 31.88 0.19 -1.77 16 15 C -0.12 -2.37 7.10 32.08 0.23 -2.14 16 16 C 0.05 1.44 5.66 86.77 0.49 1.93 16 17 N -0.51 -16.63 4.90 -865.07 -4.24 -20.87 16 18 C 0.05 1.83 4.17 85.56 0.36 2.18 16 19 C 0.44 22.25 7.56 87.66 0.66 22.91 16 20 O -0.61 -34.83 14.45 -3.04 -0.04 -34.87 16 21 N -0.58 -31.52 5.29 -306.98 -1.62 -33.14 16 22 C -0.33 -19.62 9.68 84.04 0.81 -18.81 16 23 H 0.08 5.06 7.16 -2.91 -0.02 5.04 16 24 C -0.02 -0.95 5.50 84.93 0.47 -0.49 16 25 N -0.92 -52.56 13.05 21.66 0.28 -52.28 16 26 Si 1.00 44.58 29.55 68.60 2.03 46.60 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 29 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.04 0.73 7.82 -2.39 -0.02 0.71 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 0.55 7.87 -2.39 -0.02 0.53 16 36 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.05 0.66 8.14 -2.38 -0.02 0.65 16 38 H 0.11 0.77 7.87 -2.39 -0.02 0.75 16 39 H 0.11 0.80 8.09 -2.38 -0.02 0.78 16 40 H 0.42 3.14 8.34 -92.71 -0.77 2.36 16 41 H 0.06 1.63 6.22 -2.39 -0.01 1.61 16 42 H 0.05 1.50 7.02 -2.39 -0.02 1.48 16 43 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 1.12 7.81 -2.38 -0.02 1.11 16 45 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.03 0.92 7.66 -2.39 -0.02 0.90 16 48 H 0.06 2.34 7.27 -2.39 -0.02 2.32 16 49 H 0.06 2.18 6.85 -2.39 -0.02 2.16 16 50 H 0.11 3.73 6.12 -2.39 -0.01 3.72 16 51 H 0.39 20.92 7.90 -92.71 -0.73 20.18 16 52 H 0.28 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -83.40 415.82 -1.08 -84.48 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: -0.58 Total: 35.32 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 6.48 Total: 18.49 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -8.05 Total: -120.39 kcal Atomic # 8 Polarization: -63.55 SS G_CDS: -0.96 Total: -64.51 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -83.40 -1.08 -84.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567361259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.898 kcal (2) G-P(sol) polarization free energy of solvation -83.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds