Wall clock time and date at job start Wed Apr 1 2020 00:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47467 * 2 1 4 4 H 1.09003 * 109.46760 * 54.99810 * 3 2 1 5 5 C 1.52997 * 109.47091 * 174.99985 * 3 2 1 6 6 O 1.42897 * 109.47297 * 294.99872 * 3 2 1 7 7 C 1.42904 * 114.00162 * 149.99483 * 6 3 2 8 8 C 1.50698 * 109.46898 * 180.02562 * 7 6 3 9 9 O 1.21283 * 120.00211 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99775 * 180.02562 * 8 7 6 11 11 C 1.46491 * 120.00096 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47360 * 186.88795 * 11 10 8 13 13 H 1.09004 * 110.72463 * 302.76529 * 12 11 10 14 14 C 1.54938 * 110.66923 * 179.67341 * 12 11 10 15 15 C 1.54596 * 102.92055 * 204.14775 * 14 12 11 16 16 C 1.53992 * 105.14147 * 21.95583 * 15 14 12 17 17 N 1.47906 * 107.05621 * 1.22451 * 16 15 14 18 18 C 1.46897 * 110.99856 * 214.15071 * 17 16 15 19 19 C 1.50698 * 109.46826 * 63.68444 * 18 17 16 20 20 O 1.21289 * 120.00450 * 352.96755 * 19 18 17 21 21 N 1.34784 * 119.99936 * 172.96837 * 19 18 17 22 22 C 1.37102 * 119.99782 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99847 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99752 * 179.72394 * 22 21 19 25 25 N 1.31415 * 119.99946 * 0.27414 * 24 22 21 26 26 Si 1.86800 * 120.00042 * 180.27410 * 24 22 21 27 27 H 1.48497 * 109.47026 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46908 * 119.99912 * 26 24 22 29 29 H 1.48496 * 109.47092 * 239.99965 * 26 24 22 30 30 H 1.09002 * 109.46969 * 59.99664 * 1 2 3 31 31 H 1.08995 * 109.47325 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47055 * 300.00448 * 1 2 3 33 33 H 1.09001 * 109.47248 * 239.99979 * 2 1 3 34 34 H 1.09002 * 109.46969 * 120.00336 * 2 1 3 35 35 H 1.09005 * 109.46887 * 180.02562 * 5 3 2 36 36 H 1.09008 * 109.47198 * 299.99535 * 5 3 2 37 37 H 1.08995 * 109.47319 * 59.99998 * 5 3 2 38 38 H 1.09000 * 109.46201 * 60.00569 * 7 6 3 39 39 H 1.08996 * 109.47401 * 300.00426 * 7 6 3 40 40 H 0.97001 * 119.99816 * 359.97438 * 10 8 7 41 41 H 1.09011 * 109.47031 * 66.88677 * 11 10 8 42 42 H 1.09006 * 109.47323 * 306.89036 * 11 10 8 43 43 H 1.09008 * 110.72275 * 85.79020 * 14 12 11 44 44 H 1.08995 * 110.87695 * 322.58158 * 14 12 11 45 45 H 1.09003 * 110.30967 * 263.04168 * 15 14 12 46 46 H 1.08999 * 110.30568 * 140.87177 * 15 14 12 47 47 H 1.08992 * 109.92292 * 241.87292 * 16 15 14 48 48 H 1.09005 * 110.07896 * 120.66329 * 16 15 14 49 49 H 1.08993 * 109.47407 * 303.68322 * 18 17 16 50 50 H 1.09007 * 109.47231 * 183.67806 * 18 17 16 51 51 H 0.96999 * 119.99644 * 359.97438 * 21 19 18 52 52 H 0.97001 * 119.99757 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1257 6 8 1.6621 2.0814 -1.2210 7 6 1.4560 3.4903 -1.1003 8 6 1.0628 4.0571 -2.4401 9 8 0.9689 3.3266 -3.4036 10 7 0.8167 5.3761 -2.5678 11 6 0.4350 5.9272 -3.8704 12 6 0.3822 7.4537 -3.7826 13 1 -0.3117 7.7716 -3.0044 14 6 -0.0116 8.0668 -5.1500 15 6 0.5767 9.4943 -5.0711 16 6 1.6858 9.4139 -4.0058 17 7 1.7365 8.0119 -3.5373 18 6 2.0829 7.9457 -2.1113 19 6 0.9995 8.6082 -1.2999 20 8 0.0993 9.1991 -1.8580 21 7 1.0308 8.5440 0.0460 22 6 0.0454 9.1471 0.7842 23 1 -0.7557 9.6740 0.2871 24 6 0.0746 9.0761 2.1716 25 7 1.0497 8.4353 2.7763 26 14 -1.2721 9.8913 3.1771 27 1 -2.2461 10.5422 2.2645 28 1 -1.9693 8.8659 3.9943 29 1 -0.6720 10.9132 4.0719 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9282 2.4719 0.1262 36 1 3.8532 0.9569 1.0572 37 1 3.9994 0.9052 -0.7160 38 1 2.3771 3.9643 -0.7609 39 1 0.6619 3.6809 -0.3783 40 1 0.8922 5.9604 -1.7973 41 1 -0.5461 5.5453 -4.1531 42 1 1.1696 5.6315 -4.6194 43 1 -1.0957 8.1018 -5.2591 44 1 0.4393 7.5085 -5.9703 45 1 -0.1918 10.2038 -4.7642 46 1 0.9973 9.7838 -6.0341 47 1 1.4491 10.0755 -3.1726 48 1 2.6446 9.6946 -4.4419 49 1 3.0290 8.4602 -1.9429 50 1 2.1774 6.9029 -1.8083 51 1 1.7506 8.0710 0.4923 52 1 1.0702 8.3860 3.7448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567361260.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:36 Heat of formation + Delta-G solvation = -113.710264 kcal Electronic energy + Delta-G solvation = -31492.409878 eV Core-core repulsion = 27299.090862 eV Total energy + Delta-G solvation = -4193.319017 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.20657 -39.34581 -38.12530 -37.23128 -34.48700 -34.09247 -33.84683 -32.03858 -31.31124 -30.30264 -29.90029 -27.69771 -26.73217 -24.74132 -24.04062 -23.60136 -21.13978 -21.00639 -20.55513 -20.07282 -19.26606 -18.04083 -17.25430 -17.07869 -16.36126 -16.03874 -15.68656 -15.36300 -15.04878 -14.72618 -14.57220 -14.36055 -14.16275 -14.02668 -13.89224 -13.86677 -13.36196 -13.28179 -12.87828 -12.83076 -12.39484 -12.15861 -12.06880 -11.81536 -11.74594 -11.60936 -11.43448 -11.26242 -11.19761 -11.13489 -11.03178 -10.85235 -10.74337 -10.66059 -10.49005 -10.39986 -10.26325 -9.68225 -9.60332 -9.54189 -9.31250 -8.83616 -8.15372 -7.65332 -6.60864 -4.02465 2.77139 2.90780 3.02069 3.15996 3.21934 3.62069 3.97651 4.02129 4.26838 4.61818 4.78763 4.83066 4.86687 4.94478 5.00615 5.02836 5.08615 5.16008 5.21171 5.22743 5.26336 5.42100 5.49308 5.50371 5.57097 5.65886 5.70161 5.80496 5.81765 5.85939 5.86318 5.94506 5.97117 5.99446 6.04945 6.05185 6.11440 6.22939 6.26621 6.32998 6.52181 6.58432 6.65086 7.06277 7.17466 7.27395 7.37281 7.62883 7.84841 8.36650 8.37352 8.97086 9.30659 9.79823 10.55200 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.006968 B = 0.004003 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4017.433371 B = 6993.896463 C =10063.428000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.081 3.919 4 H 0.064 0.936 5 C -0.176 4.176 6 O -0.355 6.355 7 C 0.041 3.959 8 C 0.514 3.486 9 O -0.527 6.527 10 N -0.725 5.725 11 C 0.137 3.863 12 C 0.029 3.971 13 H 0.109 0.891 14 C -0.107 4.107 15 C -0.118 4.118 16 C 0.035 3.965 17 N -0.490 5.490 18 C 0.022 3.978 19 C 0.397 3.603 20 O -0.586 6.586 21 N -0.553 5.553 22 C -0.304 4.304 23 H 0.104 0.896 24 C 0.027 3.973 25 N -0.895 5.895 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.403 0.597 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.092 0.908 50 H 0.087 0.913 51 H 0.392 0.608 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 -9.128 -5.404 11.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C 0.023 3.977 4 H 0.082 0.918 5 C -0.234 4.234 6 O -0.273 6.273 7 C -0.039 4.039 8 C 0.299 3.701 9 O -0.403 6.403 10 N -0.381 5.381 11 C 0.014 3.986 12 C -0.079 4.079 13 H 0.126 0.874 14 C -0.146 4.146 15 C -0.156 4.156 16 C -0.093 4.093 17 N -0.213 5.213 18 C -0.111 4.111 19 C 0.183 3.817 20 O -0.473 6.473 21 N -0.188 5.188 22 C -0.434 4.434 23 H 0.122 0.878 24 C -0.176 4.176 25 N -0.535 5.535 26 Si 0.755 3.245 27 H -0.192 1.192 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.241 0.759 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.110 0.890 50 H 0.104 0.896 51 H 0.226 0.774 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.999 -9.703 -6.711 12.173 hybrid contribution -0.563 1.104 2.180 2.508 sum 2.436 -8.599 -4.532 10.020 Atomic orbital electron populations 1.21749 0.95343 1.01541 1.02439 1.21609 0.96704 0.94708 1.02578 1.22244 0.94386 0.94130 0.86955 0.91817 1.22304 0.96043 1.02651 1.02369 1.88023 1.89430 1.17922 1.31913 1.22266 1.01872 0.84065 0.95706 1.20212 0.77462 0.82252 0.90144 1.90694 1.50877 1.58644 1.40085 1.46264 1.70564 1.08077 1.13216 1.21372 1.00250 0.92397 0.84629 1.23495 0.92389 0.92252 0.99765 0.87402 1.22297 1.00321 0.95921 0.96041 1.22213 0.98099 0.97030 0.98289 1.22831 0.97838 0.90227 0.98393 1.65099 1.26016 1.16416 1.13726 1.22373 0.98660 1.01218 0.88854 1.20970 0.89716 0.87469 0.83534 1.90465 1.38675 1.48007 1.70145 1.42103 1.24765 1.47249 1.04656 1.19770 1.04680 1.30658 0.88271 0.87775 1.25288 0.98035 0.97169 0.97062 1.69605 1.31698 1.41678 1.10555 0.85817 0.80374 0.78843 0.79458 1.19186 1.20617 1.20614 0.91743 0.92831 0.92961 0.91033 0.90779 0.92233 0.91594 0.91714 0.90224 0.90099 0.75929 0.91646 0.90713 0.91307 0.91321 0.91394 0.92007 0.91113 0.91742 0.88977 0.89554 0.77435 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.81 37.16 0.36 -1.17 16 2 C -0.12 -1.15 5.64 -26.73 -0.15 -1.30 16 3 C 0.08 0.88 2.72 -26.73 -0.07 0.81 16 4 H 0.06 0.65 7.79 -51.93 -0.40 0.25 16 5 C -0.18 -1.69 9.53 37.16 0.35 -1.34 16 6 O -0.35 -5.01 9.06 -55.14 -0.50 -5.51 16 7 C 0.04 0.54 6.23 36.00 0.22 0.77 16 8 C 0.51 8.22 7.91 -10.98 -0.09 8.13 16 9 O -0.53 -10.26 16.48 -14.36 -0.24 -10.50 16 10 N -0.72 -10.95 4.68 -60.29 -0.28 -11.24 16 11 C 0.14 2.07 5.41 -4.05 -0.02 2.04 16 12 C 0.03 0.46 2.18 -65.79 -0.14 0.31 16 13 H 0.11 2.05 5.05 -51.93 -0.26 1.79 16 14 C -0.11 -1.46 6.50 -24.87 -0.16 -1.62 16 15 C -0.12 -1.64 6.93 -25.38 -0.18 -1.81 16 16 C 0.03 0.54 6.01 -2.75 -0.02 0.53 16 17 N -0.49 -7.71 5.23 -224.07 -1.17 -8.89 16 18 C 0.02 0.35 5.32 -4.98 -0.03 0.33 16 19 C 0.40 8.13 6.34 -10.98 -0.07 8.06 16 20 O -0.59 -13.50 11.37 5.55 0.06 -13.44 16 21 N -0.55 -12.38 5.29 -10.96 -0.06 -12.44 16 22 C -0.30 -7.71 9.68 -14.93 -0.14 -7.86 16 23 H 0.10 2.81 7.16 -52.49 -0.38 2.44 16 24 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 25 N -0.89 -22.41 13.05 55.50 0.72 -21.69 16 26 Si 0.93 19.72 29.55 -169.99 -5.02 14.70 16 27 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 28 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 29 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 30 H 0.06 0.77 7.82 -51.93 -0.41 0.36 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 36 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 39 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 40 H 0.40 6.07 5.48 -40.82 -0.22 5.85 16 41 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 42 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 43 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 44 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.30 5.79 -51.93 -0.30 1.00 16 48 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 50 H 0.09 1.28 5.30 -51.93 -0.28 1.00 16 51 H 0.39 8.43 7.90 -40.82 -0.32 8.11 16 52 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 LS Contribution 410.01 15.07 6.18 6.18 Total: -1.00 -29.74 410.01 -9.38 -39.12 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -8.86 Total: 17.25 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -0.22 Total: 6.46 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.79 Total: -54.25 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.67 Total: -29.45 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -29.74 -9.38 -39.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567361260.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.591 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds