Wall clock time and date at job start Wed Apr 1 2020 00:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47467 * 2 1 4 4 H 1.09003 * 109.46760 * 54.99810 * 3 2 1 5 5 C 1.52997 * 109.47091 * 174.99985 * 3 2 1 6 6 O 1.42897 * 109.47297 * 294.99872 * 3 2 1 7 7 C 1.42904 * 114.00162 * 149.99483 * 6 3 2 8 8 C 1.50698 * 109.46898 * 180.02562 * 7 6 3 9 9 O 1.21283 * 120.00211 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99775 * 180.02562 * 8 7 6 11 11 C 1.46491 * 120.00096 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47360 * 186.88795 * 11 10 8 13 13 H 1.09004 * 110.72463 * 302.76529 * 12 11 10 14 14 C 1.54938 * 110.66923 * 179.67341 * 12 11 10 15 15 C 1.54596 * 102.92055 * 204.14775 * 14 12 11 16 16 C 1.53992 * 105.14147 * 21.95583 * 15 14 12 17 17 N 1.47906 * 107.05621 * 1.22451 * 16 15 14 18 18 C 1.46897 * 110.99856 * 214.15071 * 17 16 15 19 19 C 1.50698 * 109.46826 * 63.68444 * 18 17 16 20 20 O 1.21289 * 120.00450 * 352.96755 * 19 18 17 21 21 N 1.34784 * 119.99936 * 172.96837 * 19 18 17 22 22 C 1.37102 * 119.99782 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99847 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99752 * 179.72394 * 22 21 19 25 25 N 1.31415 * 119.99946 * 0.27414 * 24 22 21 26 26 Si 1.86800 * 120.00042 * 180.27410 * 24 22 21 27 27 H 1.48497 * 109.47026 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46908 * 119.99912 * 26 24 22 29 29 H 1.48496 * 109.47092 * 239.99965 * 26 24 22 30 30 H 1.09002 * 109.46969 * 59.99664 * 1 2 3 31 31 H 1.08995 * 109.47325 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47055 * 300.00448 * 1 2 3 33 33 H 1.09001 * 109.47248 * 239.99979 * 2 1 3 34 34 H 1.09002 * 109.46969 * 120.00336 * 2 1 3 35 35 H 1.09005 * 109.46887 * 180.02562 * 5 3 2 36 36 H 1.09008 * 109.47198 * 299.99535 * 5 3 2 37 37 H 1.08995 * 109.47319 * 59.99998 * 5 3 2 38 38 H 1.09000 * 109.46201 * 60.00569 * 7 6 3 39 39 H 1.08996 * 109.47401 * 300.00426 * 7 6 3 40 40 H 0.97001 * 119.99816 * 359.97438 * 10 8 7 41 41 H 1.09011 * 109.47031 * 66.88677 * 11 10 8 42 42 H 1.09006 * 109.47323 * 306.89036 * 11 10 8 43 43 H 1.09008 * 110.72275 * 85.79020 * 14 12 11 44 44 H 1.08995 * 110.87695 * 322.58158 * 14 12 11 45 45 H 1.09003 * 110.30967 * 263.04168 * 15 14 12 46 46 H 1.08999 * 110.30568 * 140.87177 * 15 14 12 47 47 H 1.08992 * 109.92292 * 241.87292 * 16 15 14 48 48 H 1.09005 * 110.07896 * 120.66329 * 16 15 14 49 49 H 1.08993 * 109.47407 * 303.68322 * 18 17 16 50 50 H 1.09007 * 109.47231 * 183.67806 * 18 17 16 51 51 H 0.96999 * 119.99644 * 359.97438 * 21 19 18 52 52 H 0.97001 * 119.99757 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1257 6 8 1.6621 2.0814 -1.2210 7 6 1.4560 3.4903 -1.1003 8 6 1.0628 4.0571 -2.4401 9 8 0.9689 3.3266 -3.4036 10 7 0.8167 5.3761 -2.5678 11 6 0.4350 5.9272 -3.8704 12 6 0.3822 7.4537 -3.7826 13 1 -0.3117 7.7716 -3.0044 14 6 -0.0116 8.0668 -5.1500 15 6 0.5767 9.4943 -5.0711 16 6 1.6858 9.4139 -4.0058 17 7 1.7365 8.0119 -3.5373 18 6 2.0829 7.9457 -2.1113 19 6 0.9995 8.6082 -1.2999 20 8 0.0993 9.1991 -1.8580 21 7 1.0308 8.5440 0.0460 22 6 0.0454 9.1471 0.7842 23 1 -0.7557 9.6740 0.2871 24 6 0.0746 9.0761 2.1716 25 7 1.0497 8.4353 2.7763 26 14 -1.2721 9.8913 3.1771 27 1 -2.2461 10.5422 2.2645 28 1 -1.9693 8.8659 3.9943 29 1 -0.6720 10.9132 4.0719 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9282 2.4719 0.1262 36 1 3.8532 0.9569 1.0572 37 1 3.9994 0.9052 -0.7160 38 1 2.3771 3.9643 -0.7609 39 1 0.6619 3.6809 -0.3783 40 1 0.8922 5.9604 -1.7973 41 1 -0.5461 5.5453 -4.1531 42 1 1.1696 5.6315 -4.6194 43 1 -1.0957 8.1018 -5.2591 44 1 0.4393 7.5085 -5.9703 45 1 -0.1918 10.2038 -4.7642 46 1 0.9973 9.7838 -6.0341 47 1 1.4491 10.0755 -3.1726 48 1 2.6446 9.6946 -4.4419 49 1 3.0290 8.4602 -1.9429 50 1 2.1774 6.9029 -1.8083 51 1 1.7506 8.0710 0.4923 52 1 1.0702 8.3860 3.7448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567361260.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:35 Heat of formation + Delta-G solvation = -133.972933 kcal Electronic energy + Delta-G solvation = -31493.288534 eV Core-core repulsion = 27299.090862 eV Total energy + Delta-G solvation = -4194.197672 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58566 -40.63668 -39.21146 -38.70386 -35.99679 -35.66495 -34.73320 -33.53516 -32.96409 -31.46284 -30.74839 -28.80590 -28.25195 -26.25206 -25.34880 -24.47083 -22.26003 -21.96869 -21.93219 -21.31078 -20.83132 -19.82172 -18.52480 -18.13821 -17.69601 -17.28025 -17.01310 -16.68507 -16.47760 -16.15510 -15.90408 -15.74982 -15.53378 -15.28067 -15.15264 -14.77076 -14.50363 -14.36421 -14.21366 -13.75761 -13.69464 -13.54945 -13.34729 -13.09895 -12.94776 -12.84346 -12.58372 -12.49281 -12.40826 -12.27075 -12.23688 -12.13579 -12.10844 -11.96872 -11.92288 -11.64028 -11.47528 -11.16810 -10.91400 -10.86952 -10.61261 -10.12374 -9.97362 -9.15009 -8.47298 -5.95511 1.33529 1.42302 1.51273 1.53697 1.79207 1.96569 2.27661 2.94376 2.99348 3.18568 3.19582 3.61499 3.77345 3.80605 3.90433 4.05122 4.07196 4.16529 4.19775 4.24583 4.25632 4.37337 4.41278 4.43502 4.47525 4.56498 4.61130 4.67574 4.73354 4.75576 4.80902 4.83358 4.98197 5.06394 5.09382 5.09479 5.14437 5.20058 5.24128 5.29884 5.37422 5.41749 5.42271 5.42868 5.87930 5.89687 6.03875 6.12014 6.40392 6.56349 7.10950 7.11038 7.52490 8.06143 8.67998 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.006968 B = 0.004003 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4017.433371 B = 6993.896463 C =10063.428000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.072 3.928 4 H 0.071 0.929 5 C -0.173 4.173 6 O -0.379 6.379 7 C 0.043 3.957 8 C 0.513 3.487 9 O -0.566 6.566 10 N -0.720 5.720 11 C 0.142 3.858 12 C 0.032 3.968 13 H 0.075 0.925 14 C -0.104 4.104 15 C -0.115 4.115 16 C 0.033 3.967 17 N -0.483 5.483 18 C 0.030 3.970 19 C 0.407 3.593 20 O -0.610 6.610 21 N -0.563 5.563 22 C -0.329 4.329 23 H 0.079 0.921 24 C -0.005 4.005 25 N -0.913 5.913 26 Si 0.983 3.017 27 H -0.276 1.276 28 H -0.273 1.273 29 H -0.274 1.274 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.403 0.597 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.052 0.948 46 H 0.089 0.911 47 H 0.038 0.962 48 H 0.085 0.915 49 H 0.110 0.890 50 H 0.104 0.896 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.097 -9.692 -5.241 11.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.015 3.985 4 H 0.089 0.911 5 C -0.231 4.231 6 O -0.299 6.299 7 C -0.037 4.037 8 C 0.300 3.700 9 O -0.444 6.444 10 N -0.376 5.376 11 C 0.018 3.982 12 C -0.076 4.076 13 H 0.092 0.908 14 C -0.143 4.143 15 C -0.153 4.153 16 C -0.095 4.095 17 N -0.205 5.205 18 C -0.103 4.103 19 C 0.193 3.807 20 O -0.498 6.498 21 N -0.200 5.200 22 C -0.458 4.458 23 H 0.097 0.903 24 C -0.206 4.206 25 N -0.553 5.553 26 Si 0.808 3.192 27 H -0.200 1.200 28 H -0.198 1.198 29 H -0.200 1.200 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.241 0.759 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.071 0.929 46 H 0.108 0.892 47 H 0.056 0.944 48 H 0.104 0.896 49 H 0.128 0.872 50 H 0.122 0.878 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.871 -10.259 -6.545 12.770 hybrid contribution -0.833 1.286 2.048 2.558 sum 3.038 -8.972 -4.498 10.486 Atomic orbital electron populations 1.21734 0.95797 1.02066 1.01366 1.21651 0.96289 0.94161 1.03362 1.22498 0.95379 0.94549 0.86044 0.91068 1.22288 0.94925 1.02686 1.03159 1.88003 1.89795 1.18179 1.33878 1.22297 1.03151 0.84164 0.94055 1.20705 0.76520 0.82024 0.90754 1.90671 1.52732 1.59447 1.41585 1.46278 1.70041 1.08008 1.13247 1.21333 1.00362 0.91855 0.84648 1.23371 0.91559 0.92621 1.00062 0.90783 1.22341 1.00980 0.95707 0.95242 1.22212 0.97253 0.96871 0.99005 1.22874 0.99528 0.89240 0.97864 1.65174 1.25855 1.16580 1.12918 1.22424 0.97580 1.01897 0.88362 1.21761 0.89812 0.85990 0.83101 1.90468 1.39976 1.48706 1.70626 1.42096 1.24670 1.48010 1.05200 1.19633 1.05281 1.31885 0.89051 0.90335 1.25885 0.99750 0.97503 0.97426 1.69649 1.32539 1.42212 1.10924 0.85003 0.78056 0.78161 0.77965 1.20038 1.19792 1.19967 0.94293 0.91556 0.92474 0.91834 0.88312 0.92461 0.89566 0.92350 0.88151 0.89000 0.75869 0.91488 0.90653 0.90696 0.89401 0.92874 0.89224 0.94384 0.89637 0.87190 0.87794 0.76964 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.81 71.98 0.71 -2.22 16 2 C -0.12 -2.10 5.64 30.59 0.17 -1.93 16 3 C 0.07 1.48 2.72 30.59 0.08 1.56 16 4 H 0.07 1.33 7.79 -2.39 -0.02 1.32 16 5 C -0.17 -3.02 9.53 71.98 0.69 -2.33 16 6 O -0.38 -10.52 9.06 -129.94 -1.18 -11.70 16 7 C 0.04 1.10 6.23 71.24 0.44 1.55 16 8 C 0.51 16.19 7.91 87.66 0.69 16.88 16 9 O -0.57 -22.07 16.48 16.00 0.26 -21.81 16 10 N -0.72 -21.33 4.68 -463.06 -2.17 -23.50 16 11 C 0.14 4.16 5.41 86.38 0.47 4.63 16 12 C 0.03 0.99 2.18 45.26 0.10 1.09 16 13 H 0.07 2.85 5.05 -2.38 -0.01 2.84 16 14 C -0.10 -2.67 6.50 31.80 0.21 -2.46 16 15 C -0.12 -3.02 6.93 31.47 0.22 -2.80 16 16 C 0.03 0.97 6.01 86.44 0.52 1.49 16 17 N -0.48 -14.55 5.23 -862.81 -4.51 -19.06 16 18 C 0.03 0.94 5.32 85.56 0.46 1.40 16 19 C 0.41 16.73 6.34 87.66 0.56 17.29 16 20 O -0.61 -28.78 11.37 -3.06 -0.03 -28.81 16 21 N -0.56 -25.51 5.29 -306.97 -1.62 -27.13 16 22 C -0.33 -16.99 9.68 84.04 0.81 -16.18 16 23 H 0.08 4.40 7.16 -2.91 -0.02 4.38 16 24 C 0.00 -0.24 5.50 84.93 0.47 0.23 16 25 N -0.91 -45.33 13.05 21.66 0.28 -45.05 16 26 Si 0.98 40.41 29.55 68.60 2.03 42.44 16 27 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 28 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 29 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 30 H 0.04 0.93 7.82 -2.39 -0.02 0.91 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.01 7.87 -2.38 -0.02 0.99 16 36 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.10 2.14 7.87 -2.39 -0.02 2.12 16 39 H 0.09 2.14 8.08 -2.39 -0.02 2.12 16 40 H 0.40 11.91 5.48 -92.71 -0.51 11.40 16 41 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.08 2.24 8.11 -2.38 -0.02 2.22 16 43 H 0.07 1.82 8.14 -2.38 -0.02 1.81 16 44 H 0.09 1.94 8.06 -2.39 -0.02 1.92 16 45 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.04 1.39 5.79 -2.39 -0.01 1.38 16 48 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 49 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 50 H 0.10 2.92 5.30 -2.38 -0.01 2.91 16 51 H 0.40 17.05 7.90 -92.71 -0.73 16.31 16 52 H 0.28 12.99 8.31 -92.71 -0.77 12.22 16 Total: -1.00 -64.81 410.01 -0.67 -65.48 By element: Atomic # 1 Polarization: 51.25 SS G_CDS: -0.32 Total: 50.93 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 6.59 Total: 18.20 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -8.02 Total: -114.73 kcal Atomic # 8 Polarization: -61.37 SS G_CDS: -0.95 Total: -62.32 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -64.81 -0.67 -65.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567361260.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.491 kcal (2) G-P(sol) polarization free energy of solvation -64.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds