Wall clock time and date at job start Wed Apr 1 2020 01:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47392 * 2 1 4 4 N 1.46899 * 109.47023 * 179.18715 * 3 2 1 5 5 C 1.46894 * 111.00028 * 58.35585 * 4 3 2 6 6 C 1.53007 * 109.47231 * 66.04116 * 5 4 3 7 7 N 1.46500 * 109.47177 * 180.02562 * 6 5 4 8 8 C 1.34772 * 120.00216 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99668 * 359.97438 * 8 7 6 10 10 C 1.50701 * 120.00364 * 179.97438 * 8 7 6 11 11 H 1.08992 * 109.86900 * 303.99180 * 10 8 7 12 12 C 1.54100 * 109.87523 * 64.99569 * 10 8 7 13 13 C 1.54815 * 104.18574 * 121.45603 * 12 10 8 14 14 H 1.09003 * 110.90746 * 262.68212 * 13 12 10 15 15 C 1.53003 * 110.90758 * 139.11146 * 13 12 10 16 16 C 1.54995 * 102.09157 * 20.88051 * 13 12 10 17 17 O 1.43739 * 109.87987 * 182.82846 * 10 8 7 18 18 C 1.46903 * 111.00399 * 294.39990 * 4 3 2 19 19 C 1.50708 * 109.46904 * 288.03387 * 18 4 3 20 20 O 1.21291 * 119.99887 * 354.22444 * 19 18 4 21 21 N 1.34768 * 119.99919 * 174.22980 * 19 18 4 22 22 C 1.37100 * 120.00439 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99501 * 0.02562 * 22 21 19 24 24 C 1.38942 * 120.00156 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00507 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99679 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47104 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46962 * 120.00254 * 26 24 22 29 29 H 1.48492 * 109.46993 * 240.00103 * 26 24 22 30 30 H 1.09009 * 109.47109 * 299.99888 * 1 2 3 31 31 H 1.08998 * 109.46875 * 60.00025 * 1 2 3 32 32 H 1.08999 * 109.47058 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47326 * 239.99768 * 2 1 3 34 34 H 1.09010 * 109.47283 * 119.99965 * 2 1 3 35 35 H 1.08997 * 109.46717 * 59.19147 * 3 2 1 36 36 H 1.08996 * 109.46874 * 299.18790 * 3 2 1 37 37 H 1.09004 * 109.47596 * 186.04213 * 5 4 3 38 38 H 1.09000 * 109.47289 * 306.04576 * 5 4 3 39 39 H 1.08993 * 109.47140 * 300.00095 * 6 5 4 40 40 H 1.09000 * 109.46608 * 60.00043 * 6 5 4 41 41 H 0.97001 * 120.00135 * 359.97438 * 7 6 5 42 42 H 1.08997 * 110.48826 * 240.12806 * 12 10 8 43 43 H 1.09005 * 110.49095 * 2.64937 * 12 10 8 44 44 H 1.08999 * 109.46974 * 60.00249 * 15 13 12 45 45 H 1.09003 * 109.46551 * 179.97438 * 15 13 12 46 46 H 1.08996 * 109.47166 * 299.99849 * 15 13 12 47 47 H 1.09002 * 110.62194 * 81.47898 * 16 13 12 48 48 H 1.09002 * 110.61542 * 204.32005 * 16 13 12 49 49 H 1.08995 * 109.46689 * 48.02810 * 18 4 3 50 50 H 1.08998 * 109.47130 * 168.03141 * 18 4 3 51 51 H 0.97001 * 120.00110 * 359.97438 * 21 19 18 52 52 H 0.97000 * 120.00328 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 0.0196 5 6 4.0508 0.7174 -1.1373 6 6 3.7039 1.4737 -2.4213 7 7 4.2439 0.7503 -3.5752 8 6 4.0599 1.2335 -4.8198 9 8 3.4469 2.2669 -4.9846 10 6 4.6158 0.4897 -6.0067 11 1 5.6893 0.3461 -5.8843 12 6 3.9166 -0.8768 -6.1431 13 6 3.2888 -0.8422 -7.5578 14 1 2.2375 -0.5583 -7.5100 15 6 3.4563 -2.1899 -8.2626 16 6 4.1273 0.2571 -8.2583 17 8 4.3526 1.2266 -7.2124 18 6 4.0186 0.8818 1.2782 19 6 3.7730 1.8587 2.3992 20 8 3.3235 2.9589 2.1572 21 7 4.0531 1.5099 3.6704 22 6 3.8302 2.3987 4.6902 23 1 3.4298 3.3783 4.4748 24 6 4.1184 2.0388 6.0009 25 7 4.6051 0.8466 6.2632 26 14 3.8140 3.2497 7.3904 27 1 3.2657 4.5130 6.8348 28 1 2.8410 2.6679 8.3497 29 1 5.0926 3.5304 8.0913 30 1 -0.3634 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8901 35 1 1.6649 1.9604 0.8826 36 1 1.6887 1.9521 -0.8972 37 1 5.1340 0.6398 -1.0427 38 1 3.6170 -0.2817 -1.1757 39 1 2.6209 1.5513 -2.5159 40 1 4.1378 2.4729 -2.3829 41 1 4.7344 -0.0760 -3.4433 42 1 4.6428 -1.6861 -6.0677 43 1 3.1432 -0.9872 -5.3829 44 1 2.9640 -2.9683 -7.6797 45 1 3.0066 -2.1396 -9.2542 46 1 4.5172 -2.4218 -8.3557 47 1 5.0735 -0.1503 -8.6144 48 1 3.5674 0.7005 -9.0818 49 1 3.5043 -0.0548 1.4933 50 1 5.0887 0.6959 1.1861 51 1 4.4123 0.6299 3.8640 52 1 4.8060 0.5952 7.1782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567427738.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:22 Heat of formation + Delta-G solvation = -118.962231 kcal Electronic energy + Delta-G solvation = -30026.186021 eV Core-core repulsion = 25832.639262 eV Total energy + Delta-G solvation = -4193.546759 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.70982 -39.21998 -38.60723 -37.17433 -34.96096 -34.01092 -33.85100 -32.70480 -31.29828 -31.09408 -29.11359 -27.18636 -26.80962 -25.36249 -24.36202 -23.37193 -22.64914 -21.20784 -20.66695 -20.20843 -18.94136 -17.84818 -17.80807 -16.74027 -16.54688 -16.07635 -15.89092 -15.79847 -15.41501 -15.19240 -14.66915 -14.52715 -14.44254 -14.16720 -13.83202 -13.70018 -13.61383 -13.38994 -13.29073 -13.02698 -12.73623 -12.64497 -12.17893 -11.97574 -11.84070 -11.64141 -11.56220 -11.49674 -11.43855 -11.33034 -11.30376 -11.25423 -11.12235 -10.95083 -10.45264 -10.33250 -10.30485 -10.20747 -9.72778 -9.47562 -9.21692 -8.45720 -7.95023 -7.84930 -6.40452 -3.80933 2.39190 2.62336 3.17267 3.27807 3.35255 3.55002 3.90258 3.93413 4.03372 4.21338 4.25640 4.32159 4.43803 4.68437 4.76965 4.81294 4.92143 4.95998 5.01393 5.06020 5.09145 5.13853 5.20054 5.21231 5.26186 5.26455 5.35994 5.41670 5.45912 5.54084 5.62132 5.68343 5.69063 5.78668 5.85646 5.91478 5.96167 6.03421 6.16741 6.19134 6.26671 6.33154 6.35359 6.53757 7.18505 7.26684 7.31905 7.56922 8.02428 8.08515 8.63970 9.20450 9.56664 10.08989 10.77494 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023404 B = 0.001814 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.097694 B =15434.534424 C =15740.719482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.166 4.166 3 C 0.052 3.948 4 N -0.507 5.507 5 C 0.040 3.960 6 C 0.123 3.877 7 N -0.727 5.727 8 C 0.511 3.489 9 O -0.516 6.516 10 C 0.061 3.939 11 H 0.095 0.905 12 C -0.144 4.144 13 C -0.127 4.127 14 H 0.088 0.912 15 C -0.142 4.142 16 C 0.048 3.952 17 O -0.346 6.346 18 C 0.043 3.957 19 C 0.445 3.555 20 O -0.574 6.574 21 N -0.567 5.567 22 C -0.296 4.296 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.398 0.602 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.097 0.903 49 H 0.053 0.947 50 H 0.087 0.913 51 H 0.391 0.609 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 -12.335 -25.483 28.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C -0.076 4.076 4 N -0.230 5.230 5 C -0.088 4.088 6 C 0.000 4.000 7 N -0.381 5.381 8 C 0.295 3.705 9 O -0.390 6.390 10 C 0.000 4.000 11 H 0.113 0.887 12 C -0.182 4.182 13 C -0.146 4.146 14 H 0.107 0.893 15 C -0.200 4.200 16 C -0.029 4.029 17 O -0.264 6.264 18 C -0.088 4.088 19 C 0.230 3.770 20 O -0.457 6.457 21 N -0.204 5.204 22 C -0.426 4.426 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.545 5.545 26 Si 0.755 3.245 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.232 0.768 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.115 0.885 49 H 0.071 0.929 50 H 0.105 0.895 51 H 0.224 0.776 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.714 -10.139 -25.631 27.573 hybrid contribution 0.187 -1.590 1.136 1.963 sum -0.527 -11.729 -24.495 27.163 Atomic orbital electron populations 1.21646 0.95419 1.01238 1.02045 1.22223 0.96915 0.99700 1.01645 1.22367 0.86396 0.94727 1.04090 1.61652 1.08027 1.52989 1.00287 1.22287 1.00588 0.95501 0.90463 1.21340 0.99440 0.96415 0.82841 1.45848 1.58307 1.28059 1.05930 1.20402 0.80521 0.85702 0.83836 1.90753 1.39706 1.23201 1.85357 1.22613 1.00096 0.91078 0.86248 0.88716 1.23040 1.00901 0.95824 0.98463 1.22751 1.01125 0.96465 0.94212 0.89316 1.21728 1.02173 0.95535 1.00524 1.23736 0.98753 0.89116 0.91284 1.89029 1.91796 1.29163 1.16375 1.21928 1.00679 0.96332 0.89898 1.19727 0.84918 0.88939 0.83400 1.90529 1.49041 1.22835 1.83266 1.41871 1.57170 1.16599 1.04797 1.19744 1.39886 0.97863 0.85083 0.87881 1.25241 0.97179 0.96971 0.98616 1.69617 1.44518 1.19292 1.21088 0.85817 0.77925 0.80295 0.80421 1.19221 1.20830 1.20786 0.92318 0.92877 0.93141 0.92294 0.91692 0.88794 0.90895 0.90323 0.93933 0.91144 0.90161 0.76785 0.89328 0.89822 0.91992 0.92046 0.92185 0.91704 0.88493 0.92872 0.89462 0.77605 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.17 -2.08 5.27 -26.73 -0.14 -2.22 16 3 C 0.05 0.80 4.78 -3.82 -0.02 0.78 16 4 N -0.51 -7.97 4.30 -236.07 -1.02 -8.98 16 5 C 0.04 0.46 4.79 -3.82 -0.02 0.44 16 6 C 0.12 1.46 5.60 -4.04 -0.02 1.44 16 7 N -0.73 -6.77 5.53 -60.29 -0.33 -7.10 16 8 C 0.51 6.02 6.95 -10.99 -0.08 5.95 16 9 O -0.52 -8.78 16.53 -14.02 -0.23 -9.01 16 10 C 0.06 0.52 3.84 -27.31 -0.10 0.42 16 11 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 12 C -0.14 -0.82 6.20 -25.20 -0.16 -0.98 16 13 C -0.13 -0.72 3.72 -88.61 -0.33 -1.05 16 14 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 15 C -0.14 -0.52 9.19 37.16 0.34 -0.18 16 16 C 0.05 0.32 7.18 38.21 0.27 0.60 16 17 O -0.35 -3.84 10.74 -54.81 -0.59 -4.43 16 18 C 0.04 0.73 5.35 -4.97 -0.03 0.70 16 19 C 0.45 10.32 7.35 -10.99 -0.08 10.24 16 20 O -0.57 -15.44 14.73 5.55 0.08 -15.36 16 21 N -0.57 -14.18 5.29 -10.96 -0.06 -14.24 16 22 C -0.30 -8.22 9.68 -14.94 -0.14 -8.36 16 23 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 24 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 26 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.65 6.29 -51.93 -0.33 0.32 16 34 H 0.06 0.88 6.29 -51.92 -0.33 0.55 16 35 H 0.09 1.78 6.56 -51.93 -0.34 1.44 16 36 H 0.07 1.06 6.55 -51.93 -0.34 0.72 16 37 H 0.08 0.81 7.86 -51.93 -0.41 0.41 16 38 H 0.04 0.42 5.97 -51.93 -0.31 0.11 16 39 H 0.07 0.91 6.59 -51.93 -0.34 0.57 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.40 2.33 8.47 -40.82 -0.35 1.99 16 42 H 0.09 0.30 7.86 -51.93 -0.41 -0.11 16 43 H 0.08 0.51 7.69 -51.93 -0.40 0.11 16 44 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.06 0.18 8.09 -51.93 -0.42 -0.24 16 47 H 0.06 0.33 8.01 -51.93 -0.42 -0.09 16 48 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.05 0.82 5.99 -51.93 -0.31 0.51 16 50 H 0.09 1.33 7.81 -51.93 -0.41 0.92 16 51 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 52 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 413.02 15.07 6.22 6.22 Total: -1.00 -35.20 413.02 -9.19 -44.39 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.74 Total: 9.26 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -0.23 Total: 6.92 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.68 Total: -54.04 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.74 Total: -28.80 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.20 -9.19 -44.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567427738.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.577 kcal (2) G-P(sol) polarization free energy of solvation -35.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds