Wall clock time and date at job start Wed Apr 1 2020 01:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47392 * 2 1 4 4 N 1.46899 * 109.47023 * 179.18715 * 3 2 1 5 5 C 1.46894 * 111.00028 * 58.35585 * 4 3 2 6 6 C 1.53007 * 109.47231 * 66.04116 * 5 4 3 7 7 N 1.46500 * 109.47177 * 180.02562 * 6 5 4 8 8 C 1.34772 * 120.00216 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99668 * 359.97438 * 8 7 6 10 10 C 1.50701 * 120.00364 * 179.97438 * 8 7 6 11 11 H 1.08992 * 109.86900 * 303.99180 * 10 8 7 12 12 C 1.54100 * 109.87523 * 64.99569 * 10 8 7 13 13 C 1.54815 * 104.18574 * 121.45603 * 12 10 8 14 14 H 1.09003 * 110.90746 * 262.68212 * 13 12 10 15 15 C 1.53003 * 110.90758 * 139.11146 * 13 12 10 16 16 C 1.54995 * 102.09157 * 20.88051 * 13 12 10 17 17 O 1.43739 * 109.87987 * 182.82846 * 10 8 7 18 18 C 1.46903 * 111.00399 * 294.39990 * 4 3 2 19 19 C 1.50708 * 109.46904 * 288.03387 * 18 4 3 20 20 O 1.21291 * 119.99887 * 354.22444 * 19 18 4 21 21 N 1.34768 * 119.99919 * 174.22980 * 19 18 4 22 22 C 1.37100 * 120.00439 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99501 * 0.02562 * 22 21 19 24 24 C 1.38942 * 120.00156 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00507 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99679 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47104 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46962 * 120.00254 * 26 24 22 29 29 H 1.48492 * 109.46993 * 240.00103 * 26 24 22 30 30 H 1.09009 * 109.47109 * 299.99888 * 1 2 3 31 31 H 1.08998 * 109.46875 * 60.00025 * 1 2 3 32 32 H 1.08999 * 109.47058 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47326 * 239.99768 * 2 1 3 34 34 H 1.09010 * 109.47283 * 119.99965 * 2 1 3 35 35 H 1.08997 * 109.46717 * 59.19147 * 3 2 1 36 36 H 1.08996 * 109.46874 * 299.18790 * 3 2 1 37 37 H 1.09004 * 109.47596 * 186.04213 * 5 4 3 38 38 H 1.09000 * 109.47289 * 306.04576 * 5 4 3 39 39 H 1.08993 * 109.47140 * 300.00095 * 6 5 4 40 40 H 1.09000 * 109.46608 * 60.00043 * 6 5 4 41 41 H 0.97001 * 120.00135 * 359.97438 * 7 6 5 42 42 H 1.08997 * 110.48826 * 240.12806 * 12 10 8 43 43 H 1.09005 * 110.49095 * 2.64937 * 12 10 8 44 44 H 1.08999 * 109.46974 * 60.00249 * 15 13 12 45 45 H 1.09003 * 109.46551 * 179.97438 * 15 13 12 46 46 H 1.08996 * 109.47166 * 299.99849 * 15 13 12 47 47 H 1.09002 * 110.62194 * 81.47898 * 16 13 12 48 48 H 1.09002 * 110.61542 * 204.32005 * 16 13 12 49 49 H 1.08995 * 109.46689 * 48.02810 * 18 4 3 50 50 H 1.08998 * 109.47130 * 168.03141 * 18 4 3 51 51 H 0.97001 * 120.00110 * 359.97438 * 21 19 18 52 52 H 0.97000 * 120.00328 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 0.0196 5 6 4.0508 0.7174 -1.1373 6 6 3.7039 1.4737 -2.4213 7 7 4.2439 0.7503 -3.5752 8 6 4.0599 1.2335 -4.8198 9 8 3.4469 2.2669 -4.9846 10 6 4.6158 0.4897 -6.0067 11 1 5.6893 0.3461 -5.8843 12 6 3.9166 -0.8768 -6.1431 13 6 3.2888 -0.8422 -7.5578 14 1 2.2375 -0.5583 -7.5100 15 6 3.4563 -2.1899 -8.2626 16 6 4.1273 0.2571 -8.2583 17 8 4.3526 1.2266 -7.2124 18 6 4.0186 0.8818 1.2782 19 6 3.7730 1.8587 2.3992 20 8 3.3235 2.9589 2.1572 21 7 4.0531 1.5099 3.6704 22 6 3.8302 2.3987 4.6902 23 1 3.4298 3.3783 4.4748 24 6 4.1184 2.0388 6.0009 25 7 4.6051 0.8466 6.2632 26 14 3.8140 3.2497 7.3904 27 1 3.2657 4.5130 6.8348 28 1 2.8410 2.6679 8.3497 29 1 5.0926 3.5304 8.0913 30 1 -0.3634 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8901 35 1 1.6649 1.9604 0.8826 36 1 1.6887 1.9521 -0.8972 37 1 5.1340 0.6398 -1.0427 38 1 3.6170 -0.2817 -1.1757 39 1 2.6209 1.5513 -2.5159 40 1 4.1378 2.4729 -2.3829 41 1 4.7344 -0.0760 -3.4433 42 1 4.6428 -1.6861 -6.0677 43 1 3.1432 -0.9872 -5.3829 44 1 2.9640 -2.9683 -7.6797 45 1 3.0066 -2.1396 -9.2542 46 1 4.5172 -2.4218 -8.3557 47 1 5.0735 -0.1503 -8.6144 48 1 3.5674 0.7005 -9.0818 49 1 3.5043 -0.0548 1.4933 50 1 5.0887 0.6959 1.1861 51 1 4.4123 0.6299 3.8640 52 1 4.8060 0.5952 7.1782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567427738.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:21 Heat of formation + Delta-G solvation = -145.971842 kcal Electronic energy + Delta-G solvation = -30027.357246 eV Core-core repulsion = 25832.639262 eV Total energy + Delta-G solvation = -4194.717984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.46769 -40.57743 -39.61038 -38.66729 -36.04804 -35.77955 -34.52387 -33.77670 -33.22308 -31.96127 -30.14138 -28.46021 -27.21397 -26.87163 -25.61469 -24.34187 -23.61572 -21.80421 -21.57223 -21.34852 -20.57705 -19.76996 -18.61964 -17.72559 -17.57587 -17.25232 -16.96215 -16.89053 -16.51776 -16.22274 -16.06021 -15.77044 -15.45516 -15.15284 -15.05625 -14.90771 -14.74019 -14.39651 -14.25238 -14.15303 -13.73357 -13.49998 -13.20043 -13.08449 -13.04823 -12.76934 -12.71491 -12.65142 -12.47093 -12.40091 -12.36478 -12.28117 -12.15308 -12.08643 -11.77185 -11.67925 -11.53792 -11.33048 -11.12618 -10.55168 -10.29202 -10.16364 -9.97312 -9.10889 -8.45055 -5.92896 1.36495 1.41611 1.51109 1.55357 1.79830 2.10249 2.30149 2.80301 3.04987 3.22103 3.42157 3.46789 3.69585 3.81428 3.82735 3.89067 3.96194 3.99747 4.16424 4.23131 4.28021 4.34642 4.35070 4.45262 4.45480 4.53967 4.58926 4.66462 4.67312 4.77265 4.80680 4.81171 4.88443 4.91348 4.96305 5.00535 5.09919 5.17999 5.20620 5.24091 5.32903 5.38035 5.39243 5.43051 5.78027 5.88869 6.08776 6.19410 6.51084 6.64190 7.16478 7.19799 7.60698 8.17830 8.72536 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023404 B = 0.001814 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.097694 B =15434.534424 C =15740.719482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.156 4.156 3 C 0.057 3.943 4 N -0.534 5.534 5 C 0.049 3.951 6 C 0.131 3.869 7 N -0.706 5.706 8 C 0.505 3.495 9 O -0.580 6.580 10 C 0.062 3.938 11 H 0.124 0.876 12 C -0.137 4.137 13 C -0.126 4.126 14 H 0.071 0.929 15 C -0.137 4.137 16 C 0.041 3.959 17 O -0.388 6.388 18 C 0.058 3.942 19 C 0.441 3.559 20 O -0.617 6.617 21 N -0.576 5.576 22 C -0.330 4.330 23 H 0.075 0.925 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.989 3.011 27 H -0.276 1.276 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.420 0.580 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.077 0.923 50 H 0.114 0.886 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.031 -15.542 -26.380 30.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.195 4.195 3 C -0.071 4.071 4 N -0.257 5.257 5 C -0.078 4.078 6 C 0.007 3.993 7 N -0.361 5.361 8 C 0.292 3.708 9 O -0.458 6.458 10 C 0.001 3.999 11 H 0.141 0.859 12 C -0.175 4.175 13 C -0.145 4.145 14 H 0.090 0.910 15 C -0.194 4.194 16 C -0.034 4.034 17 O -0.307 6.307 18 C -0.073 4.073 19 C 0.229 3.771 20 O -0.503 6.503 21 N -0.214 5.214 22 C -0.459 4.459 23 H 0.093 0.907 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.201 1.201 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.258 0.742 42 H 0.141 0.859 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.104 0.896 48 H 0.114 0.886 49 H 0.095 0.905 50 H 0.132 0.868 51 H 0.230 0.770 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.520 -13.428 -26.530 29.740 hybrid contribution -0.199 -0.549 1.337 1.459 sum 0.321 -13.977 -25.193 28.813 Atomic orbital electron populations 1.21647 0.94878 1.02286 1.01505 1.22131 0.97387 0.97481 1.02456 1.22197 0.86627 0.96367 1.01902 1.61500 1.08242 1.54855 1.01086 1.22291 1.01681 0.95934 0.87939 1.21072 0.98511 0.95584 0.84166 1.45608 1.57531 1.28320 1.04607 1.21190 0.79414 0.85024 0.85165 1.90725 1.42691 1.26102 1.86302 1.22812 1.01622 0.91463 0.84024 0.85892 1.23088 1.01367 0.94889 0.98128 1.22731 0.99962 0.97244 0.94544 0.91030 1.21699 1.03126 0.94131 1.00426 1.23960 1.00080 0.88854 0.90541 1.88989 1.92123 1.31642 1.17964 1.21771 1.02610 0.94856 0.88078 1.20888 0.82717 0.89374 0.84148 1.90503 1.50456 1.25274 1.84059 1.41922 1.57849 1.16459 1.05177 1.19648 1.41794 0.97751 0.86747 0.90671 1.25962 0.96438 0.98643 1.00147 1.69665 1.44352 1.20147 1.21970 0.84923 0.78287 0.77859 0.77581 1.20113 1.19612 1.19592 0.94149 0.92244 0.91220 0.89670 0.92319 0.93364 0.90797 0.88405 0.90991 0.92491 0.93208 0.74207 0.85950 0.90174 0.91479 0.91817 0.90906 0.89569 0.88552 0.90536 0.86791 0.77006 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.91 71.98 0.71 -2.49 16 2 C -0.16 -3.63 5.27 30.59 0.16 -3.47 16 3 C 0.06 1.76 4.78 86.30 0.41 2.18 16 4 N -0.53 -16.30 4.30 -900.79 -3.88 -20.18 16 5 C 0.05 0.99 4.79 86.31 0.41 1.40 16 6 C 0.13 3.00 5.60 86.38 0.48 3.48 16 7 N -0.71 -11.79 5.53 -463.06 -2.56 -14.35 16 8 C 0.51 11.61 6.95 87.66 0.61 12.22 16 9 O -0.58 -20.49 16.53 15.68 0.26 -20.24 16 10 C 0.06 0.94 3.84 30.22 0.12 1.06 16 11 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 12 C -0.14 -1.15 6.20 31.59 0.20 -0.95 16 13 C -0.13 -1.20 3.72 -9.49 -0.04 -1.23 16 14 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 15 C -0.14 -0.60 9.19 71.98 0.66 0.06 16 16 C 0.04 0.51 7.18 72.66 0.52 1.03 16 17 O -0.39 -8.46 10.74 -130.26 -1.40 -9.85 16 18 C 0.06 1.88 5.35 85.56 0.46 2.34 16 19 C 0.44 20.88 7.35 87.66 0.64 21.52 16 20 O -0.62 -34.73 14.73 -3.06 -0.05 -34.78 16 21 N -0.58 -29.35 5.29 -306.99 -1.62 -30.98 16 22 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 23 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 24 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 25 N -0.92 -49.38 13.05 21.66 0.28 -49.09 16 26 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 27 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 29 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 30 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.55 6.29 -2.39 -0.02 1.54 16 34 H 0.06 1.46 6.29 -2.38 -0.01 1.44 16 35 H 0.05 1.93 6.56 -2.39 -0.02 1.91 16 36 H 0.07 2.22 6.55 -2.39 -0.02 2.20 16 37 H 0.10 1.64 7.86 -2.38 -0.02 1.62 16 38 H 0.07 1.08 5.97 -2.39 -0.01 1.06 16 39 H 0.06 1.47 6.59 -2.39 -0.02 1.46 16 40 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.42 3.36 8.47 -92.71 -0.79 2.58 16 42 H 0.12 0.23 7.86 -2.39 -0.02 0.21 16 43 H 0.08 0.75 7.69 -2.38 -0.02 0.73 16 44 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 45 H 0.06 0.26 8.14 -2.39 -0.02 0.25 16 46 H 0.07 0.16 8.09 -2.39 -0.02 0.14 16 47 H 0.09 0.66 8.01 -2.39 -0.02 0.64 16 48 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.08 2.17 5.99 -2.39 -0.01 2.16 16 50 H 0.11 3.14 7.81 -2.39 -0.02 3.12 16 51 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 52 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -81.92 413.02 -0.88 -82.80 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: -0.58 Total: 32.35 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 6.64 Total: 18.93 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -7.78 Total: -114.60 kcal Atomic # 8 Polarization: -63.68 SS G_CDS: -1.18 Total: -64.87 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -81.92 -0.88 -82.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567427738.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.169 kcal (2) G-P(sol) polarization free energy of solvation -81.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds