Wall clock time and date at job start Wed Apr 1 2020 00:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47428 * 2 1 4 4 C 1.42893 * 114.00280 * 184.54751 * 3 2 1 5 5 H 1.09000 * 109.47393 * 328.73395 * 4 3 2 6 6 C 1.53005 * 109.47557 * 88.73739 * 4 3 2 7 7 C 1.52998 * 109.46994 * 58.17004 * 6 4 3 8 8 C 1.50706 * 109.47103 * 208.73561 * 4 3 2 9 9 O 1.21276 * 120.00072 * 349.18065 * 8 4 3 10 10 N 1.34772 * 119.99729 * 169.17801 * 8 4 3 11 11 C 1.47016 * 125.65472 * 354.89478 * 10 8 4 12 12 C 1.54319 * 107.27682 * 181.02090 * 11 10 8 13 13 C 1.55163 * 102.94014 * 22.19454 * 12 11 10 14 14 H 1.08992 * 111.03665 * 82.58800 * 13 12 11 15 15 C 1.53000 * 111.00213 * 206.42124 * 13 12 11 16 16 N 1.46901 * 109.47370 * 287.19576 * 15 13 12 17 17 C 1.46897 * 110.99860 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47132 * 179.97438 * 17 16 15 19 19 O 1.21293 * 119.99699 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99851 * 180.02562 * 18 17 16 21 21 C 1.37109 * 119.99593 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00093 * 359.72162 * 21 20 18 23 23 C 1.38945 * 119.99547 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00527 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99797 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47062 * 59.99896 * 25 23 21 27 27 H 1.48497 * 109.47212 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47312 * 300.00376 * 25 23 21 29 29 C 1.47431 * 125.64611 * 174.84868 * 10 8 4 30 30 H 1.08995 * 109.47323 * 300.00162 * 1 2 3 31 31 H 1.09002 * 109.47022 * 60.00417 * 1 2 3 32 32 H 1.08997 * 109.47078 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47323 * 239.99838 * 2 1 3 34 34 H 1.09002 * 109.47022 * 119.99583 * 2 1 3 35 35 H 1.08993 * 109.47352 * 178.17548 * 6 4 3 36 36 H 1.09001 * 109.46277 * 298.17658 * 6 4 3 37 37 H 1.09006 * 109.46904 * 65.45201 * 7 6 4 38 38 H 1.08992 * 109.47083 * 185.45000 * 7 6 4 39 39 H 1.08995 * 109.47638 * 305.45635 * 7 6 4 40 40 H 1.09007 * 109.88279 * 300.44215 * 11 10 8 41 41 H 1.09000 * 109.88250 * 61.44897 * 11 10 8 42 42 H 1.08999 * 110.72690 * 263.82988 * 12 11 10 43 43 H 1.09005 * 110.72500 * 140.55454 * 12 11 10 44 44 H 1.08996 * 109.46736 * 167.19115 * 15 13 12 45 45 H 1.09003 * 109.46957 * 47.20011 * 15 13 12 46 46 H 1.00893 * 110.99414 * 303.95333 * 16 15 13 47 47 H 1.09004 * 109.47258 * 59.99841 * 17 16 15 48 48 H 1.08995 * 109.47279 * 300.00167 * 17 16 15 49 49 H 0.96990 * 120.00465 * 359.97438 * 20 18 17 50 50 H 0.96999 * 120.00371 * 179.97438 * 24 23 21 51 51 H 1.09007 * 110.36441 * 37.07094 * 29 10 8 52 52 H 1.09001 * 110.46250 * 274.79534 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4269 1.4614 -0.1035 5 1 3.8964 0.6011 0.3735 6 6 3.8288 1.5087 -1.5791 7 6 3.1338 2.6898 -2.2593 8 6 3.8806 2.7250 0.5813 9 8 3.0648 3.5508 0.9325 10 7 5.1928 2.9372 0.8033 11 6 6.2743 1.9802 0.5279 12 6 7.5969 2.6456 0.9630 13 6 7.1278 3.7175 1.9821 14 1 6.9765 3.2797 2.9687 15 6 8.1182 4.8819 2.0482 16 7 9.3356 4.4502 2.7479 17 6 10.3112 5.5452 2.8310 18 6 11.5436 5.0661 3.5540 19 8 11.6030 3.9249 3.9605 20 7 12.5793 5.9061 3.7498 21 6 13.7007 5.4700 4.4072 22 1 13.7523 4.4549 4.7720 23 6 14.7686 6.3358 4.6086 24 7 14.7036 7.5727 4.1695 25 14 16.2962 5.7420 5.5048 26 1 16.8933 4.6021 4.7635 27 1 17.2823 6.8491 5.5894 28 1 15.9272 5.3026 6.8746 29 6 5.7817 4.1680 1.3619 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.9092 1.6283 -1.6578 36 1 3.5294 0.5810 -2.0669 37 1 3.5060 3.6230 -1.8363 38 1 3.3424 2.6672 -3.3289 39 1 2.0582 2.6210 -2.0973 40 1 6.1142 1.0654 1.0986 41 1 6.3046 1.7517 -0.5375 42 1 8.0919 3.1132 0.1119 43 1 8.2545 1.9200 1.4419 44 1 7.6651 5.7140 2.5869 45 1 8.3734 5.1996 1.0372 46 1 9.1172 4.0905 3.6649 47 1 9.8731 6.3817 3.3755 48 1 10.5818 5.8679 1.8257 49 1 12.5316 6.8188 3.4251 50 1 15.4490 8.1772 4.3104 51 1 5.1307 4.5851 2.1304 52 1 5.9536 4.9002 0.5730 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662603601.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:28 Heat of formation + Delta-G solvation = -122.630966 kcal Electronic energy + Delta-G solvation = -29558.355494 eV Core-core repulsion = 25364.649646 eV Total energy + Delta-G solvation = -4193.705847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.68644 -38.87013 -38.24850 -37.46216 -35.42752 -34.16828 -33.84094 -31.91471 -31.30626 -31.19787 -29.71127 -28.04144 -26.71725 -24.85811 -23.91277 -23.35275 -22.89766 -21.95273 -20.66495 -19.67059 -19.20351 -17.89605 -17.52213 -17.24891 -16.65136 -16.25075 -15.81104 -15.60379 -15.45166 -15.21743 -14.61672 -14.54713 -14.34517 -13.93379 -13.86782 -13.73820 -13.56597 -13.47023 -13.02260 -12.95432 -12.75794 -12.66178 -12.49745 -12.24653 -12.18492 -11.83038 -11.68356 -11.67248 -11.54541 -11.46627 -11.33497 -11.13192 -11.08471 -10.95296 -10.78142 -10.45279 -10.24988 -10.22522 -9.73677 -9.51156 -8.91889 -8.48353 -8.08684 -7.97209 -6.42720 -3.83792 2.33731 2.37353 3.19225 3.25136 3.29339 3.41934 3.89230 3.95599 4.10819 4.24235 4.31893 4.36687 4.43741 4.54057 4.62399 4.77210 4.80129 4.81781 4.91214 4.96794 5.05617 5.07908 5.13911 5.18188 5.24742 5.25370 5.33955 5.42178 5.45127 5.50203 5.53882 5.57230 5.67000 5.68705 5.71852 5.75504 5.80999 5.92636 5.96108 5.99287 6.01758 6.14363 6.25137 6.68079 7.16324 7.20667 7.53838 7.61651 7.90427 8.04893 8.59987 9.16570 9.53106 10.04424 10.74871 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.034765 B = 0.001515 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.206496 B =18477.282755 C =18645.443636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.355 6.355 4 C 0.078 3.922 5 H 0.082 0.918 6 C -0.142 4.142 7 C -0.148 4.148 8 C 0.534 3.466 9 O -0.519 6.519 10 N -0.617 5.617 11 C 0.091 3.909 12 C -0.115 4.115 13 C -0.097 4.097 14 H 0.086 0.914 15 C 0.070 3.930 16 N -0.666 5.666 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.301 4.301 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.113 3.887 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.031 0.969 45 H 0.075 0.925 46 H 0.349 0.651 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.079 0.921 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.537 -11.659 -12.525 29.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.016 3.984 5 H 0.100 0.900 6 C -0.180 4.180 7 C -0.206 4.206 8 C 0.321 3.679 9 O -0.394 6.394 10 N -0.354 5.354 11 C -0.031 4.031 12 C -0.152 4.152 13 C -0.116 4.116 14 H 0.105 0.895 15 C -0.060 4.060 16 N -0.299 5.299 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.431 4.431 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.010 4.010 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.049 0.951 45 H 0.093 0.907 46 H 0.168 0.832 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.097 0.903 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.741 -11.952 -12.609 29.419 hybrid contribution 0.665 0.645 0.860 1.264 sum -23.076 -11.307 -11.748 28.256 Atomic orbital electron populations 1.21723 0.93334 1.02263 1.03431 1.22597 0.96019 0.83546 1.00121 1.88050 1.18534 1.26287 1.94474 1.21861 0.83947 0.96282 0.96283 0.89989 1.22016 1.01530 1.00732 0.93698 1.21667 1.01824 0.97339 0.99729 1.19930 0.80744 0.88179 0.79065 1.90726 1.51733 1.46473 1.50468 1.48404 1.05296 1.17682 1.64002 1.22306 0.87341 0.92721 1.00775 1.22604 0.94891 0.98479 0.99262 1.22332 0.93072 0.96530 0.99675 0.89529 1.21867 0.89660 0.94672 0.99846 1.60058 1.10453 1.33537 1.25835 1.21665 0.93112 0.92408 1.01002 1.19804 0.85166 0.86888 0.85554 1.90518 1.82058 1.19135 1.55133 1.41860 1.14280 1.13084 1.50762 1.19657 0.92307 0.99058 1.32030 0.87972 1.25257 0.99526 0.95120 0.97959 1.69601 1.33200 1.04968 1.46518 0.85918 0.80472 0.78034 0.79788 1.19877 1.20973 1.19932 1.22236 0.93797 0.86767 0.98196 0.91635 0.91752 0.90985 0.93159 0.93232 0.90235 0.90643 0.92783 0.92540 0.91471 0.91383 0.91123 0.90120 0.88949 0.95074 0.90663 0.83164 0.93861 0.89596 0.77452 0.91808 0.90266 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.15 0.38 -0.51 16 2 C 0.05 0.37 6.44 37.15 0.24 0.61 16 3 O -0.36 -3.67 8.70 -54.90 -0.48 -4.15 16 4 C 0.08 0.69 2.21 -27.88 -0.06 0.62 16 5 H 0.08 0.55 7.57 -51.93 -0.39 0.16 16 6 C -0.14 -0.98 5.77 -26.73 -0.15 -1.13 16 7 C -0.15 -1.24 9.50 37.16 0.35 -0.88 16 8 C 0.53 6.26 6.08 -10.98 -0.07 6.20 16 9 O -0.52 -8.29 16.77 -14.11 -0.24 -8.53 16 10 N -0.62 -6.05 3.33 -170.52 -0.57 -6.61 16 11 C 0.09 0.67 6.15 -3.07 -0.02 0.65 16 12 C -0.11 -0.98 6.37 -24.90 -0.16 -1.13 16 13 C -0.10 -0.91 3.19 -88.47 -0.28 -1.20 16 14 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 15 C 0.07 0.76 5.14 -3.82 -0.02 0.74 16 16 N -0.67 -9.88 6.07 -115.06 -0.70 -10.57 16 17 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 18 C 0.44 10.17 7.82 -10.99 -0.09 10.08 16 19 O -0.58 -15.52 15.78 5.55 0.09 -15.43 16 20 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 21 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 25 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 C 0.11 1.10 6.40 -2.53 -0.02 1.09 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.26 7.72 -51.93 -0.40 -0.14 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.47 5.79 -51.93 -0.30 0.17 16 36 H 0.07 0.41 7.74 -51.93 -0.40 0.00 16 37 H 0.05 0.54 7.47 -51.93 -0.39 0.15 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.64 7.47 -51.93 -0.39 0.25 16 40 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 41 H 0.07 0.41 6.04 -51.93 -0.31 0.10 16 42 H 0.08 0.69 7.91 -51.93 -0.41 0.28 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.78 7.97 -51.93 -0.41 0.37 16 46 H 0.35 5.42 8.43 -39.30 -0.33 5.09 16 47 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 49 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 51 H 0.08 0.86 7.99 -51.93 -0.41 0.45 16 52 H 0.07 0.66 8.03 -51.93 -0.42 0.24 16 LS Contribution 419.58 15.07 6.32 6.32 Total: -1.00 -33.94 419.58 -9.14 -43.08 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -9.06 Total: 9.81 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -0.16 Total: 7.99 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.60 Total: -54.95 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.63 Total: -28.11 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.94 -9.14 -43.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662603601.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.549 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds