Wall clock time and date at job start Wed Apr 1 2020 00:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47428 * 2 1 4 4 C 1.42893 * 114.00280 * 184.54751 * 3 2 1 5 5 H 1.09000 * 109.47393 * 328.73395 * 4 3 2 6 6 C 1.53005 * 109.47557 * 88.73739 * 4 3 2 7 7 C 1.52998 * 109.46994 * 58.17004 * 6 4 3 8 8 C 1.50706 * 109.47103 * 208.73561 * 4 3 2 9 9 O 1.21276 * 120.00072 * 349.18065 * 8 4 3 10 10 N 1.34772 * 119.99729 * 169.17801 * 8 4 3 11 11 C 1.47016 * 125.65472 * 354.89478 * 10 8 4 12 12 C 1.54319 * 107.27682 * 181.02090 * 11 10 8 13 13 C 1.55163 * 102.94014 * 22.19454 * 12 11 10 14 14 H 1.08992 * 111.03665 * 82.58800 * 13 12 11 15 15 C 1.53000 * 111.00213 * 206.42124 * 13 12 11 16 16 N 1.46901 * 109.47370 * 287.19576 * 15 13 12 17 17 C 1.46897 * 110.99860 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47132 * 179.97438 * 17 16 15 19 19 O 1.21293 * 119.99699 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99851 * 180.02562 * 18 17 16 21 21 C 1.37109 * 119.99593 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00093 * 359.72162 * 21 20 18 23 23 C 1.38945 * 119.99547 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00527 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99797 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47062 * 59.99896 * 25 23 21 27 27 H 1.48497 * 109.47212 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47312 * 300.00376 * 25 23 21 29 29 C 1.47431 * 125.64611 * 174.84868 * 10 8 4 30 30 H 1.08995 * 109.47323 * 300.00162 * 1 2 3 31 31 H 1.09002 * 109.47022 * 60.00417 * 1 2 3 32 32 H 1.08997 * 109.47078 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47323 * 239.99838 * 2 1 3 34 34 H 1.09002 * 109.47022 * 119.99583 * 2 1 3 35 35 H 1.08993 * 109.47352 * 178.17548 * 6 4 3 36 36 H 1.09001 * 109.46277 * 298.17658 * 6 4 3 37 37 H 1.09006 * 109.46904 * 65.45201 * 7 6 4 38 38 H 1.08992 * 109.47083 * 185.45000 * 7 6 4 39 39 H 1.08995 * 109.47638 * 305.45635 * 7 6 4 40 40 H 1.09007 * 109.88279 * 300.44215 * 11 10 8 41 41 H 1.09000 * 109.88250 * 61.44897 * 11 10 8 42 42 H 1.08999 * 110.72690 * 263.82988 * 12 11 10 43 43 H 1.09005 * 110.72500 * 140.55454 * 12 11 10 44 44 H 1.08996 * 109.46736 * 167.19115 * 15 13 12 45 45 H 1.09003 * 109.46957 * 47.20011 * 15 13 12 46 46 H 1.00893 * 110.99414 * 303.95333 * 16 15 13 47 47 H 1.09004 * 109.47258 * 59.99841 * 17 16 15 48 48 H 1.08995 * 109.47279 * 300.00167 * 17 16 15 49 49 H 0.96990 * 120.00465 * 359.97438 * 20 18 17 50 50 H 0.96999 * 120.00371 * 179.97438 * 24 23 21 51 51 H 1.09007 * 110.36441 * 37.07094 * 29 10 8 52 52 H 1.09001 * 110.46250 * 274.79534 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4269 1.4614 -0.1035 5 1 3.8964 0.6011 0.3735 6 6 3.8288 1.5087 -1.5791 7 6 3.1338 2.6898 -2.2593 8 6 3.8806 2.7250 0.5813 9 8 3.0648 3.5508 0.9325 10 7 5.1928 2.9372 0.8033 11 6 6.2743 1.9802 0.5279 12 6 7.5969 2.6456 0.9630 13 6 7.1278 3.7175 1.9821 14 1 6.9765 3.2797 2.9687 15 6 8.1182 4.8819 2.0482 16 7 9.3356 4.4502 2.7479 17 6 10.3112 5.5452 2.8310 18 6 11.5436 5.0661 3.5540 19 8 11.6030 3.9249 3.9605 20 7 12.5793 5.9061 3.7498 21 6 13.7007 5.4700 4.4072 22 1 13.7523 4.4549 4.7720 23 6 14.7686 6.3358 4.6086 24 7 14.7036 7.5727 4.1695 25 14 16.2962 5.7420 5.5048 26 1 16.8933 4.6021 4.7635 27 1 17.2823 6.8491 5.5894 28 1 15.9272 5.3026 6.8746 29 6 5.7817 4.1680 1.3619 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.9092 1.6283 -1.6578 36 1 3.5294 0.5810 -2.0669 37 1 3.5060 3.6230 -1.8363 38 1 3.3424 2.6672 -3.3289 39 1 2.0582 2.6210 -2.0973 40 1 6.1142 1.0654 1.0986 41 1 6.3046 1.7517 -0.5375 42 1 8.0919 3.1132 0.1119 43 1 8.2545 1.9200 1.4419 44 1 7.6651 5.7140 2.5869 45 1 8.3734 5.1996 1.0372 46 1 9.1172 4.0905 3.6649 47 1 9.8731 6.3817 3.3755 48 1 10.5818 5.8679 1.8257 49 1 12.5316 6.8188 3.4251 50 1 15.4490 8.1772 4.3104 51 1 5.1307 4.5851 2.1304 52 1 5.9536 4.9002 0.5730 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662603601.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:27 Heat of formation + Delta-G solvation = -146.719922 kcal Electronic energy + Delta-G solvation = -29559.400069 eV Core-core repulsion = 25364.649646 eV Total energy + Delta-G solvation = -4194.750423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.47431 -40.15598 -39.46416 -38.35427 -36.63692 -35.80439 -34.77046 -33.28502 -32.76537 -31.83026 -30.46963 -29.07959 -27.85405 -26.37026 -24.84452 -24.12401 -23.74280 -22.56290 -21.56741 -20.92186 -20.40673 -19.87341 -18.27428 -17.97727 -17.82646 -17.22618 -16.87306 -16.65459 -16.45245 -16.22232 -16.14428 -15.88531 -15.23078 -15.14811 -14.97206 -14.69993 -14.53657 -14.28839 -14.16536 -13.76880 -13.67157 -13.49000 -13.40374 -13.22770 -13.17225 -13.08671 -12.82871 -12.76067 -12.65760 -12.41986 -12.27941 -12.13822 -12.08641 -12.00479 -11.85485 -11.79037 -11.50884 -11.47716 -10.96939 -10.46434 -10.32085 -9.99957 -9.71278 -9.29287 -8.45102 -5.93946 1.41106 1.43077 1.49370 1.53826 1.65400 2.07682 2.30387 2.81869 2.90591 3.22446 3.35509 3.53338 3.64725 3.73289 3.78685 3.92257 3.96438 4.16238 4.21268 4.28093 4.31268 4.33816 4.37084 4.44633 4.46665 4.50859 4.53703 4.58832 4.61201 4.68348 4.75046 4.81049 4.84141 4.91097 4.98517 5.01909 5.06345 5.09609 5.16407 5.26099 5.30024 5.35273 5.39728 5.42155 5.89751 6.10683 6.12321 6.40512 6.45131 6.61774 7.06846 7.14119 7.58392 8.13460 8.71962 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.034765 B = 0.001515 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.206496 B =18477.282755 C =18645.443636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.387 6.387 4 C 0.078 3.922 5 H 0.108 0.892 6 C -0.136 4.136 7 C -0.146 4.146 8 C 0.526 3.474 9 O -0.575 6.575 10 N -0.615 5.615 11 C 0.092 3.908 12 C -0.111 4.111 13 C -0.089 4.089 14 H 0.080 0.920 15 C 0.074 3.926 16 N -0.675 5.675 17 C 0.065 3.935 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.574 5.574 21 C -0.335 4.335 22 H 0.080 0.920 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.272 1.272 29 C 0.113 3.887 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.038 0.962 45 H 0.086 0.914 46 H 0.343 0.657 47 H 0.064 0.936 48 H 0.106 0.894 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.062 0.938 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.199 -12.887 -13.794 29.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.306 6.306 4 C 0.017 3.983 5 H 0.125 0.875 6 C -0.174 4.174 7 C -0.204 4.204 8 C 0.315 3.685 9 O -0.454 6.454 10 N -0.350 5.350 11 C -0.030 4.030 12 C -0.149 4.149 13 C -0.108 4.108 14 H 0.098 0.902 15 C -0.056 4.056 16 N -0.307 5.307 17 C -0.067 4.067 18 C 0.226 3.774 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.465 4.465 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.198 1.198 29 C -0.010 4.010 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.105 0.895 46 H 0.162 0.838 47 H 0.082 0.918 48 H 0.124 0.876 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.081 0.919 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.392 -13.183 -13.903 30.237 hybrid contribution 0.502 1.016 1.247 1.686 sum -22.890 -12.167 -12.655 28.847 Atomic orbital electron populations 1.21757 0.93186 1.03412 1.02383 1.22817 0.96265 0.82341 1.01471 1.88029 1.19423 1.28442 1.94719 1.21982 0.83684 0.95281 0.97328 0.87487 1.22039 1.02178 1.00969 0.92176 1.21632 1.00821 0.97054 1.00858 1.20605 0.80706 0.88698 0.78474 1.90692 1.53231 1.48487 1.52951 1.48487 1.05436 1.18046 1.63014 1.22468 0.85608 0.92375 1.02533 1.22575 0.95422 0.98000 0.98901 1.22200 0.92490 0.96398 0.99755 0.90154 1.21910 0.88357 0.95394 0.99902 1.60062 1.11805 1.33139 1.25739 1.21526 0.90745 0.93255 1.01219 1.20896 0.86159 0.86052 0.84336 1.90487 1.83048 1.20877 1.56475 1.41939 1.14453 1.13542 1.51200 1.19645 0.94220 0.98651 1.33980 0.90247 1.26021 1.01816 0.95141 0.98205 1.69664 1.34111 1.05569 1.46791 0.85000 0.77063 0.77873 0.78469 1.19653 1.19589 1.19761 1.22185 0.93514 0.87227 0.98045 0.93201 0.92288 0.88701 0.91010 0.92505 0.88736 0.88274 0.95156 0.90834 0.93171 0.89854 0.88756 0.89747 0.89507 0.94340 0.89540 0.83832 0.91838 0.87622 0.77000 0.91335 0.91924 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 71.98 0.74 -0.93 16 2 C 0.05 0.56 6.44 71.98 0.46 1.03 16 3 O -0.39 -7.77 8.70 -130.17 -1.13 -8.90 16 4 C 0.08 1.25 2.21 29.85 0.07 1.32 16 5 H 0.11 1.13 7.57 -2.39 -0.02 1.11 16 6 C -0.14 -1.53 5.77 30.60 0.18 -1.35 16 7 C -0.15 -2.31 9.50 71.98 0.68 -1.62 16 8 C 0.53 12.17 6.08 87.66 0.53 12.70 16 9 O -0.57 -19.09 16.77 15.79 0.26 -18.83 16 10 N -0.62 -11.32 3.33 -811.79 -2.70 -14.02 16 11 C 0.09 1.09 6.15 86.73 0.53 1.63 16 12 C -0.11 -1.66 6.37 31.78 0.20 -1.45 16 13 C -0.09 -1.57 3.19 -9.40 -0.03 -1.60 16 14 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 15 C 0.07 1.47 5.14 86.30 0.44 1.92 16 16 N -0.68 -19.12 6.07 -517.94 -3.15 -22.27 16 17 C 0.06 2.09 6.17 85.56 0.53 2.62 16 18 C 0.44 20.23 7.82 87.66 0.69 20.92 16 19 O -0.62 -33.54 15.78 -3.07 -0.05 -33.59 16 20 N -0.57 -28.97 5.29 -306.98 -1.62 -30.60 16 21 C -0.34 -18.85 9.68 84.04 0.81 -18.04 16 22 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.26 13.05 21.66 0.28 -48.98 16 25 Si 0.99 42.46 29.55 68.60 2.03 44.49 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 28 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 29 C 0.11 2.15 6.40 86.85 0.56 2.70 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.54 7.72 -2.39 -0.02 0.52 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.09 0.78 5.79 -2.39 -0.01 0.76 16 36 H 0.10 0.69 7.74 -2.39 -0.02 0.67 16 37 H 0.03 0.61 7.47 -2.38 -0.02 0.59 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 0.95 7.47 -2.39 -0.02 0.93 16 40 H 0.08 0.79 8.09 -2.38 -0.02 0.77 16 41 H 0.09 0.73 6.04 -2.39 -0.01 0.72 16 42 H 0.08 1.22 7.91 -2.39 -0.02 1.20 16 43 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.09 1.57 7.97 -2.39 -0.02 1.55 16 46 H 0.34 10.44 8.43 -89.70 -0.76 9.69 16 47 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 48 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 49 H 0.40 18.99 7.90 -92.72 -0.73 18.26 16 50 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 51 H 0.06 1.40 7.99 -2.38 -0.02 1.38 16 52 H 0.08 1.37 8.03 -2.39 -0.02 1.35 16 Total: -1.00 -75.82 419.58 0.22 -75.60 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -0.57 Total: 37.41 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 6.86 Total: 19.67 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -7.19 Total: -115.86 kcal Atomic # 8 Polarization: -60.40 SS G_CDS: -0.92 Total: -61.32 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -75.82 0.22 -75.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662603601.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.119 kcal (2) G-P(sol) polarization free energy of solvation -75.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds