Wall clock time and date at job start Wed Apr 1 2020 00:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.47053 * 2 1 4 4 C 1.42897 * 114.00049 * 175.78471 * 3 2 1 5 5 H 1.09001 * 109.47393 * 351.28758 * 4 3 2 6 6 C 1.53006 * 109.46767 * 111.28102 * 4 3 2 7 7 C 1.52994 * 109.47281 * 295.57742 * 6 4 3 8 8 C 1.50696 * 109.47401 * 231.27857 * 4 3 2 9 9 O 1.21284 * 119.99722 * 0.02562 * 8 4 3 10 10 N 1.34771 * 119.99968 * 179.97438 * 8 4 3 11 11 C 1.46510 * 119.99577 * 180.02562 * 10 8 4 12 12 C 1.53001 * 109.46933 * 184.47470 * 11 10 8 13 13 H 1.09000 * 110.36934 * 58.78366 * 12 11 10 14 14 C 1.54385 * 110.41076 * 296.43990 * 12 11 10 15 15 C 1.54270 * 105.05649 * 217.36717 * 14 12 11 16 16 C 1.54373 * 105.06084 * 359.97438 * 15 14 12 17 17 N 1.48552 * 110.41278 * 181.13646 * 12 11 10 18 18 C 1.46905 * 111.00176 * 277.81987 * 17 12 11 19 19 C 1.50694 * 109.46920 * 164.26912 * 18 17 12 20 20 O 1.21291 * 120.00543 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99797 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00403 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99342 * 0.02562 * 22 21 19 24 24 C 1.38940 * 120.00375 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00439 * 180.02562 * 24 22 21 26 26 Si 1.86808 * 120.00153 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46989 * 89.99703 * 26 24 22 28 28 H 1.48501 * 109.47161 * 210.00338 * 26 24 22 29 29 H 1.48500 * 109.46639 * 330.00059 * 26 24 22 30 30 H 1.08998 * 109.47224 * 300.00151 * 1 2 3 31 31 H 1.08996 * 109.46980 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46921 * 60.00218 * 1 2 3 33 33 H 1.08995 * 109.47395 * 119.99972 * 2 1 3 34 34 H 1.09002 * 109.46920 * 240.00237 * 2 1 3 35 35 H 1.09004 * 109.47112 * 55.58307 * 6 4 3 36 36 H 1.09005 * 109.46867 * 175.58105 * 6 4 3 37 37 H 1.08997 * 109.47628 * 301.76182 * 7 6 4 38 38 H 1.09000 * 109.47264 * 61.76616 * 7 6 4 39 39 H 1.09008 * 109.46932 * 181.76150 * 7 6 4 40 40 H 0.96993 * 120.00562 * 0.02562 * 10 8 4 41 41 H 1.08994 * 109.46877 * 304.47253 * 11 10 8 42 42 H 1.09003 * 109.47255 * 64.47787 * 11 10 8 43 43 H 1.09000 * 110.32197 * 336.26136 * 14 12 11 44 44 H 1.08994 * 110.32708 * 98.47342 * 14 12 11 45 45 H 1.09001 * 110.32032 * 118.89786 * 15 14 12 46 46 H 1.08997 * 110.32125 * 240.99895 * 15 14 12 47 47 H 1.09002 * 110.41219 * 142.63405 * 16 15 14 48 48 H 1.09000 * 110.41214 * 264.95882 * 16 15 14 49 49 H 1.08998 * 109.46830 * 284.26972 * 18 17 12 50 50 H 1.08993 * 109.46952 * 44.26848 * 18 17 12 51 51 H 0.97006 * 119.99962 * 0.02562 * 21 19 18 52 52 H 0.96997 * 120.00389 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4275 1.4614 0.0960 5 1 3.8573 0.4819 0.3060 6 6 3.9870 1.9909 -1.2260 7 6 3.7243 0.9711 -2.3359 8 6 3.7811 2.4142 1.2086 9 8 2.9025 2.9432 1.8560 10 7 5.0736 2.6777 1.4849 11 6 5.4172 3.6037 2.5670 12 6 6.9327 3.8118 2.5980 13 1 7.2810 4.2076 1.6440 14 6 7.6517 2.4854 2.9253 15 6 8.8398 2.8849 3.8246 16 6 8.7390 4.4190 3.9645 17 7 7.3074 4.7272 3.7064 18 6 7.1315 6.1313 3.3119 19 6 7.1411 7.0033 4.5409 20 8 7.2812 6.5044 5.6375 21 7 6.9951 8.3378 4.4214 22 6 7.0033 9.1312 5.5395 23 1 7.1273 8.6868 6.5160 24 6 6.8522 10.5069 5.4164 25 7 6.8606 11.2675 6.4880 26 14 6.6386 11.2757 3.7273 27 1 5.1936 11.3367 3.3904 28 1 7.2041 12.6488 3.7332 29 1 7.3484 10.4524 2.7155 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.4993 2.9333 -1.4755 36 1 5.0605 2.1522 -1.1276 37 1 4.1856 0.0196 -2.0718 38 1 2.6497 0.8332 -2.4557 39 1 4.1504 1.3343 -3.2713 40 1 5.7763 2.2544 0.9674 41 1 4.9226 4.5601 2.3975 42 1 5.0880 3.1880 3.5193 43 1 6.9810 1.8133 3.4605 44 1 8.0110 2.0138 2.0107 45 1 8.7522 2.4087 4.8012 46 1 9.7821 2.6077 3.3522 47 1 9.0191 4.7282 4.9715 48 1 9.3731 4.9104 3.2266 49 1 7.9452 6.4273 2.6499 50 1 6.1803 6.2463 2.7923 51 1 6.8834 8.7369 3.5443 52 1 6.7555 12.2279 6.4020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663475643.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:50 Heat of formation + Delta-G solvation = -114.151596 kcal Electronic energy + Delta-G solvation = -30308.238154 eV Core-core repulsion = 26114.900000 eV Total energy + Delta-G solvation = -4193.338154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.38461 -39.40372 -38.13587 -37.66610 -34.94695 -34.05472 -33.87727 -32.15573 -31.53634 -31.33089 -30.23132 -27.57878 -26.94279 -24.90176 -23.92280 -23.17177 -22.51330 -21.29298 -20.41747 -20.36381 -19.31250 -18.29213 -17.78143 -17.46065 -16.31066 -16.14170 -15.89981 -15.64236 -15.25037 -14.97269 -14.75594 -14.56494 -14.55286 -14.34242 -14.13249 -13.59050 -13.42415 -13.06606 -12.84867 -12.79559 -12.71046 -12.62074 -12.47519 -12.29240 -12.24287 -11.98311 -11.79986 -11.74229 -11.60212 -11.30407 -11.24357 -11.23333 -11.02074 -10.95964 -10.56859 -10.55346 -10.39725 -9.93870 -9.55288 -9.51615 -9.21970 -8.66795 -8.15267 -8.11620 -6.26866 -3.78041 2.40907 2.63036 3.04872 3.10338 3.17807 3.44854 3.77950 3.95346 4.13935 4.30195 4.36547 4.43962 4.45764 4.56496 4.69546 4.73904 4.79447 4.82370 4.96263 4.97802 5.04510 5.10316 5.13414 5.20265 5.24398 5.29980 5.36381 5.45753 5.54061 5.55917 5.56933 5.61509 5.63118 5.73567 5.76321 5.79728 5.81186 5.88700 5.93504 6.03358 6.11727 6.21083 6.28372 6.71982 6.96085 7.04831 7.28551 7.62503 8.05545 8.18700 8.64894 8.99938 9.46964 9.88630 10.86384 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012006 B = 0.002321 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.597895 B =12059.245754 C =13276.473953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.076 3.924 5 H 0.088 0.912 6 C -0.133 4.133 7 C -0.152 4.152 8 C 0.502 3.498 9 O -0.514 6.514 10 N -0.727 5.727 11 C 0.133 3.867 12 C 0.048 3.952 13 H 0.056 0.944 14 C -0.119 4.119 15 C -0.122 4.122 16 C 0.039 3.961 17 N -0.475 5.475 18 C 0.030 3.970 19 C 0.456 3.544 20 O -0.556 6.556 21 N -0.594 5.594 22 C -0.302 4.302 23 H 0.120 0.880 24 C 0.040 3.960 25 N -0.883 5.883 26 Si 0.879 3.121 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.397 0.603 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.095 0.905 48 H 0.040 0.960 49 H 0.054 0.946 50 H 0.089 0.911 51 H 0.369 0.631 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.134 -24.825 -20.846 32.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.271 6.271 4 C 0.014 3.986 5 H 0.106 0.894 6 C -0.171 4.171 7 C -0.209 4.209 8 C 0.286 3.714 9 O -0.388 6.388 10 N -0.382 5.382 11 C 0.009 3.991 12 C -0.061 4.061 13 H 0.074 0.926 14 C -0.157 4.157 15 C -0.161 4.161 16 C -0.089 4.089 17 N -0.199 5.199 18 C -0.102 4.102 19 C 0.241 3.759 20 O -0.436 6.436 21 N -0.234 5.234 22 C -0.431 4.431 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.523 5.523 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.231 0.769 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.114 0.886 48 H 0.058 0.942 49 H 0.072 0.928 50 H 0.107 0.893 51 H 0.202 0.798 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.187 -24.457 -19.030 31.152 hybrid contribution 0.859 0.709 -2.251 2.511 sum -2.327 -23.748 -21.280 31.972 Atomic orbital electron populations 1.21735 0.93408 1.02224 1.03534 1.22676 0.96115 0.83487 0.99989 1.88050 1.18567 1.26450 1.94060 1.21992 0.84115 0.98585 0.93901 0.89382 1.21889 1.00964 1.00790 0.93479 1.21775 1.02454 0.98492 0.98202 1.20751 0.82652 0.83082 0.84922 1.90767 1.47511 1.50262 1.50229 1.45918 1.07151 1.48003 1.37088 1.21251 0.93922 0.93637 0.90279 1.22835 0.94424 0.94465 0.94395 0.92601 1.22361 0.97519 0.96253 0.99595 1.22281 0.97528 0.95849 1.00402 1.23176 0.87952 0.94845 1.02909 1.64920 1.18792 1.02108 1.34060 1.22146 1.01982 0.89200 0.96917 1.19556 0.83978 0.82322 0.90049 1.90560 1.52610 1.73131 1.27343 1.42210 1.66566 1.06026 1.08579 1.19415 1.47031 0.88358 0.88279 0.86287 1.25028 0.97785 0.95958 0.97459 1.69621 1.49307 1.05456 1.27916 0.86683 0.79072 0.79820 0.83859 1.19586 1.20235 1.19611 0.91479 0.91058 0.91777 0.93280 0.93108 0.90230 0.90453 0.92732 0.91962 0.92029 0.76907 0.90989 0.90198 0.90652 0.91529 0.90782 0.91519 0.88619 0.94162 0.92781 0.89299 0.79821 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.40 6.12 37.16 0.23 0.63 16 3 O -0.35 -3.76 9.09 -55.14 -0.50 -4.26 16 4 C 0.08 0.64 2.66 -27.88 -0.07 0.56 16 5 H 0.09 0.51 7.60 -51.93 -0.39 0.12 16 6 C -0.13 -0.85 5.58 -26.73 -0.15 -1.00 16 7 C -0.15 -0.75 9.31 37.15 0.35 -0.41 16 8 C 0.50 5.92 7.23 -10.99 -0.08 5.84 16 9 O -0.51 -8.86 16.50 -14.36 -0.24 -9.10 16 10 N -0.73 -6.75 5.25 -60.29 -0.32 -7.07 16 11 C 0.13 1.61 5.21 -4.04 -0.02 1.59 16 12 C 0.05 0.53 2.37 -66.07 -0.16 0.38 16 13 H 0.06 0.55 7.99 -51.93 -0.42 0.13 16 14 C -0.12 -1.07 6.01 -25.34 -0.15 -1.22 16 15 C -0.12 -1.27 7.00 -25.35 -0.18 -1.45 16 16 C 0.04 0.54 6.08 -2.11 -0.01 0.53 16 17 N -0.47 -7.33 4.56 -223.45 -1.02 -8.35 16 18 C 0.03 0.50 5.31 -4.98 -0.03 0.47 16 19 C 0.46 10.51 7.69 -10.99 -0.08 10.43 16 20 O -0.56 -15.10 15.30 5.55 0.08 -15.02 16 21 N -0.59 -14.42 5.09 -10.97 -0.06 -14.47 16 22 C -0.30 -8.69 10.16 -14.93 -0.15 -8.84 16 23 H 0.12 3.90 7.39 -52.48 -0.39 3.52 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -26.20 13.96 55.50 0.77 -25.42 16 26 Si 0.88 19.77 27.74 -169.99 -4.71 15.05 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.34 8.10 -51.93 -0.42 -0.08 16 34 H 0.05 0.27 7.14 -51.93 -0.37 -0.10 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.34 7.44 -51.93 -0.39 -0.04 16 37 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.06 0.36 7.10 -51.93 -0.37 -0.01 16 39 H 0.06 0.27 8.14 -51.92 -0.42 -0.16 16 40 H 0.40 2.31 7.51 -40.82 -0.31 2.01 16 41 H 0.07 1.02 7.28 -51.93 -0.38 0.64 16 42 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 43 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.10 1.62 7.66 -51.93 -0.40 1.22 16 48 H 0.04 0.52 7.68 -51.93 -0.40 0.12 16 49 H 0.05 0.79 7.64 -51.93 -0.40 0.39 16 50 H 0.09 1.35 7.08 -51.93 -0.37 0.98 16 51 H 0.37 7.90 5.76 -40.82 -0.24 7.67 16 52 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 415.65 15.07 6.26 6.26 Total: -1.00 -36.96 415.65 -8.97 -45.94 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -9.03 Total: 8.54 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -0.23 Total: 7.89 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.62 Total: -55.31 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.65 Total: -28.37 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.71 Total: 15.05 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.96 -8.97 -45.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663475643.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.214 kcal (2) G-P(sol) polarization free energy of solvation -36.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds