Wall clock time and date at job start Wed Apr 1 2020 00:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.47053 * 2 1 4 4 C 1.42897 * 114.00049 * 175.78471 * 3 2 1 5 5 H 1.09001 * 109.47393 * 351.28758 * 4 3 2 6 6 C 1.53006 * 109.46767 * 111.28102 * 4 3 2 7 7 C 1.52994 * 109.47281 * 295.57742 * 6 4 3 8 8 C 1.50696 * 109.47401 * 231.27857 * 4 3 2 9 9 O 1.21284 * 119.99722 * 0.02562 * 8 4 3 10 10 N 1.34771 * 119.99968 * 179.97438 * 8 4 3 11 11 C 1.46510 * 119.99577 * 180.02562 * 10 8 4 12 12 C 1.53001 * 109.46933 * 184.47470 * 11 10 8 13 13 H 1.09000 * 110.36934 * 58.78366 * 12 11 10 14 14 C 1.54385 * 110.41076 * 296.43990 * 12 11 10 15 15 C 1.54270 * 105.05649 * 217.36717 * 14 12 11 16 16 C 1.54373 * 105.06084 * 359.97438 * 15 14 12 17 17 N 1.48552 * 110.41278 * 181.13646 * 12 11 10 18 18 C 1.46905 * 111.00176 * 277.81987 * 17 12 11 19 19 C 1.50694 * 109.46920 * 164.26912 * 18 17 12 20 20 O 1.21291 * 120.00543 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99797 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00403 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99342 * 0.02562 * 22 21 19 24 24 C 1.38940 * 120.00375 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00439 * 180.02562 * 24 22 21 26 26 Si 1.86808 * 120.00153 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46989 * 89.99703 * 26 24 22 28 28 H 1.48501 * 109.47161 * 210.00338 * 26 24 22 29 29 H 1.48500 * 109.46639 * 330.00059 * 26 24 22 30 30 H 1.08998 * 109.47224 * 300.00151 * 1 2 3 31 31 H 1.08996 * 109.46980 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46921 * 60.00218 * 1 2 3 33 33 H 1.08995 * 109.47395 * 119.99972 * 2 1 3 34 34 H 1.09002 * 109.46920 * 240.00237 * 2 1 3 35 35 H 1.09004 * 109.47112 * 55.58307 * 6 4 3 36 36 H 1.09005 * 109.46867 * 175.58105 * 6 4 3 37 37 H 1.08997 * 109.47628 * 301.76182 * 7 6 4 38 38 H 1.09000 * 109.47264 * 61.76616 * 7 6 4 39 39 H 1.09008 * 109.46932 * 181.76150 * 7 6 4 40 40 H 0.96993 * 120.00562 * 0.02562 * 10 8 4 41 41 H 1.08994 * 109.46877 * 304.47253 * 11 10 8 42 42 H 1.09003 * 109.47255 * 64.47787 * 11 10 8 43 43 H 1.09000 * 110.32197 * 336.26136 * 14 12 11 44 44 H 1.08994 * 110.32708 * 98.47342 * 14 12 11 45 45 H 1.09001 * 110.32032 * 118.89786 * 15 14 12 46 46 H 1.08997 * 110.32125 * 240.99895 * 15 14 12 47 47 H 1.09002 * 110.41219 * 142.63405 * 16 15 14 48 48 H 1.09000 * 110.41214 * 264.95882 * 16 15 14 49 49 H 1.08998 * 109.46830 * 284.26972 * 18 17 12 50 50 H 1.08993 * 109.46952 * 44.26848 * 18 17 12 51 51 H 0.97006 * 119.99962 * 0.02562 * 21 19 18 52 52 H 0.96997 * 120.00389 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4275 1.4614 0.0960 5 1 3.8573 0.4819 0.3060 6 6 3.9870 1.9909 -1.2260 7 6 3.7243 0.9711 -2.3359 8 6 3.7811 2.4142 1.2086 9 8 2.9025 2.9432 1.8560 10 7 5.0736 2.6777 1.4849 11 6 5.4172 3.6037 2.5670 12 6 6.9327 3.8118 2.5980 13 1 7.2810 4.2076 1.6440 14 6 7.6517 2.4854 2.9253 15 6 8.8398 2.8849 3.8246 16 6 8.7390 4.4190 3.9645 17 7 7.3074 4.7272 3.7064 18 6 7.1315 6.1313 3.3119 19 6 7.1411 7.0033 4.5409 20 8 7.2812 6.5044 5.6375 21 7 6.9951 8.3378 4.4214 22 6 7.0033 9.1312 5.5395 23 1 7.1273 8.6868 6.5160 24 6 6.8522 10.5069 5.4164 25 7 6.8606 11.2675 6.4880 26 14 6.6386 11.2757 3.7273 27 1 5.1936 11.3367 3.3904 28 1 7.2041 12.6488 3.7332 29 1 7.3484 10.4524 2.7155 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.4993 2.9333 -1.4755 36 1 5.0605 2.1522 -1.1276 37 1 4.1856 0.0196 -2.0718 38 1 2.6497 0.8332 -2.4557 39 1 4.1504 1.3343 -3.2713 40 1 5.7763 2.2544 0.9674 41 1 4.9226 4.5601 2.3975 42 1 5.0880 3.1880 3.5193 43 1 6.9810 1.8133 3.4605 44 1 8.0110 2.0138 2.0107 45 1 8.7522 2.4087 4.8012 46 1 9.7821 2.6077 3.3522 47 1 9.0191 4.7282 4.9715 48 1 9.3731 4.9104 3.2266 49 1 7.9452 6.4273 2.6499 50 1 6.1803 6.2463 2.7923 51 1 6.8834 8.7369 3.5443 52 1 6.7555 12.2279 6.4020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663475643.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:49 Heat of formation + Delta-G solvation = -143.856993 kcal Electronic energy + Delta-G solvation = -30309.526277 eV Core-core repulsion = 26114.900000 eV Total energy + Delta-G solvation = -4194.626277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28452 -40.64676 -39.46948 -38.71175 -36.08229 -35.82216 -34.56773 -33.80779 -33.14434 -31.86698 -31.12992 -28.48766 -28.24188 -26.09342 -25.44312 -23.72976 -23.06760 -22.30137 -21.39908 -21.25274 -21.16248 -20.22386 -18.58298 -18.15212 -17.65152 -17.24877 -16.95573 -16.71052 -16.44932 -16.27521 -16.01941 -15.82601 -15.25984 -15.20538 -15.01258 -14.91437 -14.59585 -14.39127 -14.29307 -14.18311 -13.67305 -13.33081 -13.28130 -13.14091 -13.08524 -12.96915 -12.94761 -12.82002 -12.44021 -12.29161 -12.26835 -12.15698 -12.09674 -11.99202 -11.84768 -11.71685 -11.52001 -11.35015 -11.15052 -10.46033 -10.31721 -10.25164 -10.16184 -9.39409 -8.42247 -6.02926 1.27325 1.34231 1.42141 1.53994 1.82318 1.95534 2.21481 2.62753 2.89934 3.12995 3.26096 3.57936 3.62225 3.75561 3.85180 3.94023 4.01392 4.10845 4.19212 4.19993 4.29969 4.31211 4.33393 4.35379 4.39791 4.48851 4.50972 4.58146 4.69647 4.78881 4.80693 4.85458 4.97650 5.02461 5.03417 5.06676 5.11049 5.19242 5.25060 5.27824 5.31927 5.33325 5.42285 5.51951 5.87193 5.93891 6.02376 6.13552 6.56198 6.59183 6.87870 7.23887 7.39149 7.97298 8.75581 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012006 B = 0.002321 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.597895 B =12059.245754 C =13276.473953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.387 6.387 4 C 0.079 3.921 5 H 0.122 0.878 6 C -0.129 4.129 7 C -0.149 4.149 8 C 0.496 3.504 9 O -0.580 6.580 10 N -0.703 5.703 11 C 0.139 3.861 12 C 0.057 3.943 13 H 0.088 0.912 14 C -0.111 4.111 15 C -0.116 4.116 16 C 0.035 3.965 17 N -0.512 5.512 18 C 0.044 3.956 19 C 0.452 3.548 20 O -0.606 6.606 21 N -0.595 5.595 22 C -0.326 4.326 23 H 0.054 0.946 24 C -0.017 4.017 25 N -0.935 5.935 26 Si 0.965 3.035 27 H -0.260 1.260 28 H -0.273 1.273 29 H -0.230 1.230 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.419 0.581 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.060 0.940 46 H 0.097 0.903 47 H 0.049 0.951 48 H 0.058 0.942 49 H 0.089 0.911 50 H 0.109 0.891 51 H 0.388 0.612 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 -26.979 -26.235 37.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.306 6.306 4 C 0.018 3.982 5 H 0.139 0.861 6 C -0.167 4.167 7 C -0.206 4.206 8 C 0.283 3.717 9 O -0.459 6.459 10 N -0.358 5.358 11 C 0.014 3.986 12 C -0.051 4.051 13 H 0.105 0.895 14 C -0.149 4.149 15 C -0.154 4.154 16 C -0.092 4.092 17 N -0.237 5.237 18 C -0.088 4.088 19 C 0.240 3.760 20 O -0.490 6.490 21 N -0.237 5.237 22 C -0.455 4.455 23 H 0.072 0.928 24 C -0.215 4.215 25 N -0.576 5.576 26 Si 0.785 3.215 27 H -0.185 1.185 28 H -0.198 1.198 29 H -0.153 1.153 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.258 0.742 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.130 0.870 45 H 0.079 0.921 46 H 0.115 0.885 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.107 0.893 50 H 0.127 0.873 51 H 0.224 0.776 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.777 -26.668 -24.465 36.234 hybrid contribution 0.428 1.292 -0.404 1.420 sum -1.349 -25.376 -24.870 35.556 Atomic orbital electron populations 1.21777 0.93596 1.03360 1.02271 1.22877 0.96147 0.82461 1.01338 1.88024 1.20005 1.28456 1.94129 1.22169 0.83607 0.99079 0.93391 0.86072 1.21907 1.02070 1.00084 0.92591 1.21761 1.01975 0.98945 0.97934 1.21577 0.82467 0.82728 0.84932 1.90741 1.49450 1.52947 1.52715 1.45649 1.07222 1.46885 1.36064 1.21000 0.94836 0.92863 0.89871 1.22861 0.93315 0.94731 0.94236 0.89469 1.22401 0.96397 0.94939 1.01176 1.22257 0.99751 0.92755 1.00612 1.23143 0.87462 0.97797 1.00824 1.64754 1.20044 1.01897 1.36993 1.22005 1.04354 0.88985 0.93466 1.20909 0.81098 0.82336 0.91699 1.90537 1.54050 1.74103 1.30303 1.42052 1.67279 1.06332 1.08031 1.18982 1.49303 0.89630 0.87625 0.92805 1.26120 0.96295 0.95793 1.03328 1.69806 1.50159 1.06168 1.31465 0.85370 0.79857 0.78849 0.77471 1.18513 1.19754 1.15323 0.93702 0.88726 0.92052 0.92931 0.90507 0.92487 0.87830 0.90821 0.93144 0.91209 0.74230 0.93368 0.93197 0.91213 0.86998 0.92138 0.88484 0.93216 0.92407 0.89293 0.87318 0.77626 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.28 71.98 0.74 -1.25 16 2 C 0.05 0.62 6.12 71.98 0.44 1.07 16 3 O -0.39 -7.90 9.09 -129.94 -1.18 -9.08 16 4 C 0.08 1.14 2.66 29.85 0.08 1.22 16 5 H 0.12 0.92 7.60 -2.39 -0.02 0.90 16 6 C -0.13 -1.23 5.58 30.59 0.17 -1.06 16 7 C -0.15 -0.94 9.31 71.98 0.67 -0.27 16 8 C 0.50 11.17 7.23 87.66 0.63 11.80 16 9 O -0.58 -20.63 16.50 16.00 0.26 -20.36 16 10 N -0.70 -11.23 5.25 -463.05 -2.43 -13.67 16 11 C 0.14 3.22 5.21 86.38 0.45 3.67 16 12 C 0.06 1.08 2.37 45.07 0.11 1.19 16 13 H 0.09 1.20 7.99 -2.39 -0.02 1.18 16 14 C -0.11 -1.54 6.01 31.50 0.19 -1.35 16 15 C -0.12 -2.09 7.00 31.49 0.22 -1.87 16 16 C 0.04 0.95 6.08 86.42 0.53 1.48 16 17 N -0.51 -15.25 4.56 -860.88 -3.93 -19.18 16 18 C 0.04 1.39 5.31 85.55 0.45 1.84 16 19 C 0.45 21.34 7.69 87.66 0.67 22.01 16 20 O -0.61 -35.09 15.30 -3.06 -0.05 -35.14 16 21 N -0.59 -29.21 5.09 -306.99 -1.56 -30.77 16 22 C -0.33 -19.75 10.16 84.04 0.85 -18.90 16 23 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 24 C -0.02 -0.97 5.50 84.92 0.47 -0.51 16 25 N -0.94 -57.85 13.96 21.66 0.30 -57.55 16 26 Si 0.96 40.10 27.74 68.60 1.90 42.00 16 27 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 28 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 29 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.05 0.63 8.10 -2.39 -0.02 0.61 16 34 H 0.08 0.59 7.14 -2.39 -0.02 0.58 16 35 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.10 0.41 7.44 -2.38 -0.02 0.40 16 37 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.05 0.45 7.10 -2.39 -0.02 0.43 16 39 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 40 H 0.42 2.86 7.51 -92.71 -0.70 2.16 16 41 H 0.05 1.35 7.28 -2.39 -0.02 1.34 16 42 H 0.05 1.46 8.11 -2.39 -0.02 1.44 16 43 H 0.07 1.08 7.84 -2.39 -0.02 1.06 16 44 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 47 H 0.05 1.77 7.66 -2.39 -0.02 1.75 16 48 H 0.06 1.33 7.68 -2.39 -0.02 1.31 16 49 H 0.09 2.25 7.64 -2.39 -0.02 2.23 16 50 H 0.11 3.05 7.08 -2.39 -0.02 3.04 16 51 H 0.39 15.84 5.76 -92.70 -0.53 15.31 16 52 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -92.65 415.65 -0.37 -93.02 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: -0.37 Total: 31.65 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 6.68 Total: 19.08 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -7.62 Total: -121.16 kcal Atomic # 8 Polarization: -63.62 SS G_CDS: -0.96 Total: -64.58 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 1.90 Total: 42.00 kcal Total: -92.65 -0.37 -93.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663475643.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.835 kcal (2) G-P(sol) polarization free energy of solvation -92.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds