Wall clock time and date at job start Wed Apr 1 2020 00:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47180 * 2 1 4 4 H 1.09004 * 109.46881 * 304.99679 * 3 2 1 5 5 C 1.52991 * 109.47095 * 64.99910 * 3 2 1 6 6 C 1.53001 * 109.47153 * 185.00173 * 3 2 1 7 7 C 1.50700 * 109.46809 * 174.99921 * 6 3 2 8 8 O 1.21273 * 120.00469 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99380 * 179.97438 * 7 6 3 10 10 C 1.46504 * 119.99577 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47006 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.50609 * 304.91336 * 11 10 9 13 13 C 1.53105 * 109.50577 * 184.78454 * 11 10 9 14 14 N 1.47016 * 109.25401 * 183.21315 * 13 11 10 15 15 C 1.46902 * 110.99624 * 182.39090 * 14 13 11 16 16 C 1.50695 * 109.47329 * 170.00394 * 15 14 13 17 17 O 1.21292 * 119.99918 * 353.72333 * 16 15 14 18 18 N 1.34773 * 120.00569 * 173.71742 * 16 15 14 19 19 C 1.37098 * 120.00489 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99702 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99976 * 180.28114 * 19 18 16 22 22 N 1.31413 * 119.99916 * 179.72795 * 21 19 18 23 23 Si 1.86798 * 119.99944 * 359.72216 * 21 19 18 24 24 H 1.48500 * 109.47098 * 90.00322 * 23 21 19 25 25 H 1.48511 * 109.46992 * 210.00244 * 23 21 19 26 26 H 1.48500 * 109.47282 * 330.00285 * 23 21 19 27 27 C 1.47010 * 110.75148 * 58.61703 * 14 13 11 28 28 C 1.53093 * 109.26078 * 301.37814 * 27 14 13 29 29 O 1.43013 * 109.50934 * 64.99951 * 11 10 9 30 30 H 1.09005 * 109.46924 * 60.00433 * 1 2 3 31 31 H 1.08995 * 109.47181 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47063 * 299.99962 * 1 2 3 33 33 H 1.08998 * 109.47548 * 240.00103 * 2 1 3 34 34 H 1.09003 * 109.47326 * 119.99905 * 2 1 3 35 35 H 1.09004 * 109.47445 * 60.00114 * 5 3 2 36 36 H 1.09003 * 109.47033 * 180.02562 * 5 3 2 37 37 H 1.09003 * 109.47138 * 299.99962 * 5 3 2 38 38 H 1.09000 * 109.47585 * 54.99734 * 6 3 2 39 39 H 1.08998 * 109.47245 * 294.99737 * 6 3 2 40 40 H 0.96995 * 120.00715 * 0.02562 * 9 7 6 41 41 H 1.09005 * 109.47414 * 60.00106 * 10 9 7 42 42 H 1.08994 * 109.47310 * 299.99516 * 10 9 7 43 43 H 1.09004 * 109.50611 * 63.28087 * 13 11 10 44 44 H 1.08995 * 109.50178 * 303.14713 * 13 11 10 45 45 H 1.08998 * 109.46986 * 50.00124 * 15 14 13 46 46 H 1.09008 * 109.46872 * 290.00562 * 15 14 13 47 47 H 0.97006 * 119.99396 * 0.02562 * 18 16 15 48 48 H 0.96995 * 119.99818 * 179.97438 * 22 21 19 49 49 H 1.09003 * 109.51009 * 61.31413 * 27 14 13 50 50 H 1.09009 * 109.50684 * 181.44455 * 27 14 13 51 51 H 1.09003 * 109.51306 * 176.78713 * 28 27 14 52 52 H 1.09004 * 109.50623 * 296.87513 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4444 -0.1258 7 6 4.0569 2.8634 -0.2493 8 8 3.2660 3.7827 -0.2383 9 7 5.3761 3.1108 -0.3720 10 6 5.8546 4.4903 -0.4915 11 6 7.3794 4.4922 -0.6174 12 1 7.8148 3.9541 0.2248 13 6 7.8902 5.9355 -0.6223 14 7 9.3469 5.9335 -0.8207 15 6 9.8862 7.2992 -0.7752 16 6 11.3916 7.2438 -0.7351 17 8 11.9565 6.1757 -0.6287 18 7 12.1103 8.3809 -0.8176 19 6 13.4799 8.3305 -0.7806 20 1 13.9829 7.3794 -0.6858 21 6 14.2207 9.5034 -0.8598 22 7 15.5333 9.4555 -0.8189 23 14 13.3506 11.1482 -1.0244 24 1 13.0810 11.7029 0.3264 25 1 14.2122 12.0901 -1.7835 26 1 12.0672 10.9592 -1.7472 27 6 9.6996 5.2696 -2.0841 28 6 9.1707 3.8331 -2.0645 29 8 7.7585 3.8534 -1.8395 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0699 1.5875 2.1491 36 1 1.9982 3.1544 1.3071 37 1 0.5489 2.1253 1.3968 38 1 3.8571 0.8800 -1.0113 39 1 4.0030 0.9837 0.7596 40 1 6.0087 2.3756 -0.3811 41 1 5.5621 5.0544 0.3942 42 1 5.4168 4.9513 -1.3768 43 1 7.6533 6.4087 0.3307 44 1 7.4133 6.4875 -1.4321 45 1 9.5174 7.8059 0.1166 46 1 9.5662 7.8459 -1.6623 47 1 11.6585 9.2351 -0.9024 48 1 16.0504 10.2743 -0.8746 49 1 9.2516 5.8111 -2.9173 50 1 10.7836 5.2568 -2.1983 51 1 9.3799 3.3550 -3.0215 52 1 9.6593 3.2762 -1.2650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666697666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:55 Heat of formation + Delta-G solvation = -123.652270 kcal Electronic energy + Delta-G solvation = -29654.338819 eV Core-core repulsion = 25460.588685 eV Total energy + Delta-G solvation = -4193.750134 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.33365 -39.68872 -38.29437 -36.81436 -35.55366 -34.92040 -33.92223 -31.98337 -31.72150 -30.94526 -29.25631 -28.27019 -26.73125 -25.16987 -24.21631 -23.77171 -22.43262 -21.04514 -20.40791 -19.99787 -19.40867 -18.34568 -17.35626 -16.79321 -16.53614 -16.12784 -15.85809 -15.75153 -15.31233 -15.20205 -15.00121 -14.71532 -14.51740 -14.23989 -13.93467 -13.75353 -13.63755 -13.55824 -13.15297 -13.03250 -12.78225 -12.54958 -12.30950 -12.24271 -12.10591 -11.98383 -11.84841 -11.69228 -11.37333 -11.32403 -11.19471 -11.05734 -10.98323 -10.90599 -10.63303 -10.60575 -10.02318 -9.98197 -9.74531 -9.58231 -9.30215 -8.63971 -8.23175 -8.11700 -6.35343 -3.86994 2.42510 2.87315 2.99300 3.03768 3.12308 3.53219 3.67852 3.73840 4.06530 4.37181 4.39067 4.51323 4.61440 4.68116 4.75604 4.84499 4.90316 4.94023 5.06964 5.10779 5.16124 5.19416 5.25043 5.29276 5.31272 5.34025 5.42402 5.45236 5.45466 5.53029 5.60798 5.62096 5.68955 5.70354 5.71623 5.75692 5.85887 5.86412 6.00438 6.05042 6.10409 6.14461 6.25047 6.96494 6.97457 7.13978 7.25609 7.53600 8.00200 8.09476 8.55433 8.90536 9.37755 9.77867 10.77646 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.034508 B = 0.001618 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.207450 B =17301.127486 C =17768.976855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.076 4.076 4 H 0.077 0.923 5 C -0.155 4.155 6 C -0.138 4.138 7 C 0.512 3.488 8 O -0.540 6.540 9 N -0.725 5.725 10 C 0.130 3.870 11 C 0.084 3.916 12 H 0.075 0.925 13 C 0.026 3.974 14 N -0.512 5.512 15 C 0.043 3.957 16 C 0.451 3.549 17 O -0.560 6.560 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.043 3.957 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.270 1.270 27 C 0.015 3.985 28 C 0.068 3.932 29 O -0.384 6.384 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.404 0.596 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.044 0.956 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.370 0.630 48 H 0.274 0.726 49 H 0.035 0.965 50 H 0.110 0.890 51 H 0.098 0.902 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.301 -14.513 0.569 30.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.096 0.904 5 C -0.212 4.212 6 C -0.178 4.178 7 C 0.299 3.701 8 O -0.417 6.417 9 N -0.377 5.377 10 C 0.005 3.995 11 C 0.026 3.974 12 H 0.093 0.907 13 C -0.103 4.103 14 N -0.237 5.237 15 C -0.088 4.088 16 C 0.237 3.763 17 O -0.442 6.442 18 N -0.229 5.229 19 C -0.435 4.435 20 H 0.138 0.862 21 C -0.160 4.160 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.196 1.196 27 C -0.113 4.113 28 C -0.008 4.008 29 O -0.303 6.303 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.239 0.761 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.111 0.889 46 H 0.067 0.933 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.053 0.947 50 H 0.128 0.872 51 H 0.116 0.884 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.175 -14.795 0.899 30.080 hybrid contribution -0.168 1.794 -0.661 1.919 sum -26.343 -13.001 0.238 29.378 Atomic orbital electron populations 1.21807 0.95724 1.01453 1.02109 1.21598 0.96210 0.96077 1.01927 1.20921 0.92664 0.96011 0.99922 0.90410 1.21996 1.01204 1.02117 0.95839 1.21775 0.97868 0.93860 1.04289 1.20721 0.81871 0.91796 0.75702 1.90672 1.54618 1.46706 1.49752 1.45937 1.07787 1.09127 1.74843 1.21322 0.91587 0.83710 1.02832 1.22313 0.93435 0.93257 0.88433 0.90674 1.22681 0.88906 0.96488 1.02243 1.61767 1.09305 1.17353 1.35237 1.21917 0.95527 0.89509 1.01848 1.19587 0.87657 0.84870 0.84192 1.90538 1.71660 1.28759 1.53209 1.42221 1.07494 1.06720 1.66476 1.19424 0.78993 0.97216 1.47828 0.86243 1.25033 0.95387 0.98050 0.97572 1.69618 1.04481 1.28824 1.49069 0.86682 0.79559 0.84249 0.78947 1.19568 1.20137 1.19555 1.22923 1.04101 0.94831 0.89404 1.22678 0.80097 0.96015 1.02019 1.87951 1.23831 1.78627 1.39932 0.92731 0.92891 0.92384 0.92010 0.91948 0.93417 0.90753 0.92734 0.88859 0.88885 0.76114 0.89867 0.90670 0.89425 0.93813 0.88897 0.93262 0.79710 0.91569 0.94722 0.87193 0.88411 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.67 37.16 0.36 -0.48 16 2 C -0.12 -0.66 5.40 -26.73 -0.14 -0.81 16 3 C -0.08 -0.54 2.04 -90.62 -0.18 -0.73 16 4 H 0.08 0.67 7.95 -51.93 -0.41 0.26 16 5 C -0.15 -1.21 8.69 37.15 0.32 -0.89 16 6 C -0.14 -0.88 5.18 -27.88 -0.14 -1.02 16 7 C 0.51 4.87 7.55 -10.98 -0.08 4.79 16 8 O -0.54 -7.04 13.97 5.56 0.08 -6.97 16 9 N -0.72 -6.17 5.50 -60.29 -0.33 -6.51 16 10 C 0.13 1.24 5.35 -4.04 -0.02 1.22 16 11 C 0.08 0.88 2.84 -26.68 -0.08 0.81 16 12 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 13 C 0.03 0.30 4.93 -3.71 -0.02 0.28 16 14 N -0.51 -7.82 4.42 -235.74 -1.04 -8.86 16 15 C 0.04 0.70 5.45 -4.98 -0.03 0.68 16 16 C 0.45 9.92 7.35 -10.99 -0.08 9.84 16 17 O -0.56 -14.41 14.25 5.55 0.08 -14.33 16 18 N -0.59 -13.72 5.09 -10.97 -0.06 -13.78 16 19 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16 20 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 22 N -0.88 -25.37 13.96 55.50 0.77 -24.59 16 23 Si 0.88 19.09 27.73 -169.99 -4.71 14.37 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 27 C 0.02 0.23 5.30 -3.72 -0.02 0.21 16 28 C 0.07 0.84 7.01 37.21 0.26 1.11 16 29 O -0.38 -4.55 10.42 -35.23 -0.37 -4.91 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.76 5.95 -51.93 -0.31 0.45 16 37 H 0.05 0.40 6.57 -51.93 -0.34 0.05 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.40 2.73 8.47 -40.82 -0.35 2.38 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 44 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 1.31 8.04 -51.93 -0.42 0.89 16 46 H 0.05 0.72 8.12 -51.92 -0.42 0.30 16 47 H 0.37 7.58 5.77 -40.82 -0.24 7.34 16 48 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.11 1.99 6.10 -51.92 -0.32 1.68 16 51 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 52 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 409.78 15.07 6.18 6.18 Total: -1.00 -33.53 409.78 -8.54 -42.07 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -9.04 Total: 9.89 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -0.10 Total: 7.43 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.66 Total: -53.73 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.21 Total: -26.21 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.53 -8.54 -42.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666697666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.582 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds