Wall clock time and date at job start Wed Apr 1 2020 00:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47180 * 2 1 4 4 H 1.09004 * 109.46881 * 304.99679 * 3 2 1 5 5 C 1.52991 * 109.47095 * 64.99910 * 3 2 1 6 6 C 1.53001 * 109.47153 * 185.00173 * 3 2 1 7 7 C 1.50700 * 109.46809 * 174.99921 * 6 3 2 8 8 O 1.21273 * 120.00469 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99380 * 179.97438 * 7 6 3 10 10 C 1.46504 * 119.99577 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47006 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.50609 * 304.91336 * 11 10 9 13 13 C 1.53105 * 109.50577 * 184.78454 * 11 10 9 14 14 N 1.47016 * 109.25401 * 183.21315 * 13 11 10 15 15 C 1.46902 * 110.99624 * 182.39090 * 14 13 11 16 16 C 1.50695 * 109.47329 * 170.00394 * 15 14 13 17 17 O 1.21292 * 119.99918 * 353.72333 * 16 15 14 18 18 N 1.34773 * 120.00569 * 173.71742 * 16 15 14 19 19 C 1.37098 * 120.00489 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99702 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99976 * 180.28114 * 19 18 16 22 22 N 1.31413 * 119.99916 * 179.72795 * 21 19 18 23 23 Si 1.86798 * 119.99944 * 359.72216 * 21 19 18 24 24 H 1.48500 * 109.47098 * 90.00322 * 23 21 19 25 25 H 1.48511 * 109.46992 * 210.00244 * 23 21 19 26 26 H 1.48500 * 109.47282 * 330.00285 * 23 21 19 27 27 C 1.47010 * 110.75148 * 58.61703 * 14 13 11 28 28 C 1.53093 * 109.26078 * 301.37814 * 27 14 13 29 29 O 1.43013 * 109.50934 * 64.99951 * 11 10 9 30 30 H 1.09005 * 109.46924 * 60.00433 * 1 2 3 31 31 H 1.08995 * 109.47181 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47063 * 299.99962 * 1 2 3 33 33 H 1.08998 * 109.47548 * 240.00103 * 2 1 3 34 34 H 1.09003 * 109.47326 * 119.99905 * 2 1 3 35 35 H 1.09004 * 109.47445 * 60.00114 * 5 3 2 36 36 H 1.09003 * 109.47033 * 180.02562 * 5 3 2 37 37 H 1.09003 * 109.47138 * 299.99962 * 5 3 2 38 38 H 1.09000 * 109.47585 * 54.99734 * 6 3 2 39 39 H 1.08998 * 109.47245 * 294.99737 * 6 3 2 40 40 H 0.96995 * 120.00715 * 0.02562 * 9 7 6 41 41 H 1.09005 * 109.47414 * 60.00106 * 10 9 7 42 42 H 1.08994 * 109.47310 * 299.99516 * 10 9 7 43 43 H 1.09004 * 109.50611 * 63.28087 * 13 11 10 44 44 H 1.08995 * 109.50178 * 303.14713 * 13 11 10 45 45 H 1.08998 * 109.46986 * 50.00124 * 15 14 13 46 46 H 1.09008 * 109.46872 * 290.00562 * 15 14 13 47 47 H 0.97006 * 119.99396 * 0.02562 * 18 16 15 48 48 H 0.96995 * 119.99818 * 179.97438 * 22 21 19 49 49 H 1.09003 * 109.51009 * 61.31413 * 27 14 13 50 50 H 1.09009 * 109.50684 * 181.44455 * 27 14 13 51 51 H 1.09003 * 109.51306 * 176.78713 * 28 27 14 52 52 H 1.09004 * 109.50623 * 296.87513 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4444 -0.1258 7 6 4.0569 2.8634 -0.2493 8 8 3.2660 3.7827 -0.2383 9 7 5.3761 3.1108 -0.3720 10 6 5.8546 4.4903 -0.4915 11 6 7.3794 4.4922 -0.6174 12 1 7.8148 3.9541 0.2248 13 6 7.8902 5.9355 -0.6223 14 7 9.3469 5.9335 -0.8207 15 6 9.8862 7.2992 -0.7752 16 6 11.3916 7.2438 -0.7351 17 8 11.9565 6.1757 -0.6287 18 7 12.1103 8.3809 -0.8176 19 6 13.4799 8.3305 -0.7806 20 1 13.9829 7.3794 -0.6858 21 6 14.2207 9.5034 -0.8598 22 7 15.5333 9.4555 -0.8189 23 14 13.3506 11.1482 -1.0244 24 1 13.0810 11.7029 0.3264 25 1 14.2122 12.0901 -1.7835 26 1 12.0672 10.9592 -1.7472 27 6 9.6996 5.2696 -2.0841 28 6 9.1707 3.8331 -2.0645 29 8 7.7585 3.8534 -1.8395 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0699 1.5875 2.1491 36 1 1.9982 3.1544 1.3071 37 1 0.5489 2.1253 1.3968 38 1 3.8571 0.8800 -1.0113 39 1 4.0030 0.9837 0.7596 40 1 6.0087 2.3756 -0.3811 41 1 5.5621 5.0544 0.3942 42 1 5.4168 4.9513 -1.3768 43 1 7.6533 6.4087 0.3307 44 1 7.4133 6.4875 -1.4321 45 1 9.5174 7.8059 0.1166 46 1 9.5662 7.8459 -1.6623 47 1 11.6585 9.2351 -0.9024 48 1 16.0504 10.2743 -0.8746 49 1 9.2516 5.8111 -2.9173 50 1 10.7836 5.2568 -2.1983 51 1 9.3799 3.3550 -3.0215 52 1 9.6593 3.2762 -1.2650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666697666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:54 Heat of formation + Delta-G solvation = -150.224287 kcal Electronic energy + Delta-G solvation = -29655.491068 eV Core-core repulsion = 25460.588685 eV Total energy + Delta-G solvation = -4194.902384 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.22750 -40.71569 -39.85276 -37.40327 -36.74011 -35.85875 -35.73411 -33.75758 -32.82127 -31.50213 -30.50060 -29.01731 -27.80251 -26.54660 -25.11405 -24.82980 -23.41026 -21.85018 -21.28255 -21.19202 -20.63288 -20.21029 -18.10114 -17.95871 -17.52414 -17.15029 -17.08706 -16.76469 -16.47138 -16.41094 -15.95367 -15.69795 -15.40432 -15.31803 -15.14336 -14.99203 -14.76340 -14.57089 -14.30233 -14.13901 -13.87235 -13.74232 -13.37246 -13.26897 -13.04434 -12.89433 -12.77133 -12.67810 -12.43450 -12.35638 -12.24746 -12.15911 -11.98716 -11.73615 -11.62241 -11.51217 -11.45722 -11.37112 -10.85378 -10.67440 -10.32456 -10.23683 -10.05062 -9.34896 -8.41796 -6.02447 1.29597 1.34656 1.43407 1.71760 1.94292 2.14346 2.22178 2.56454 2.64609 3.12614 3.15752 3.75463 3.78440 3.86580 3.93461 3.95075 4.03020 4.08162 4.14704 4.21855 4.31590 4.34909 4.43479 4.47108 4.50940 4.56606 4.61642 4.64416 4.66115 4.72949 4.77336 4.86370 4.86871 4.92408 4.95491 5.01516 5.17201 5.20752 5.26042 5.33377 5.43402 5.51495 5.56915 5.62681 5.78876 5.93125 5.99282 6.13381 6.58968 6.59858 6.87813 7.31698 7.39214 7.95761 8.75718 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.034508 B = 0.001618 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.207450 B =17301.127486 C =17768.976855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.076 4.076 4 H 0.056 0.944 5 C -0.151 4.151 6 C -0.132 4.132 7 C 0.508 3.492 8 O -0.580 6.580 9 N -0.719 5.719 10 C 0.137 3.863 11 C 0.089 3.911 12 H 0.078 0.922 13 C 0.027 3.973 14 N -0.532 5.532 15 C 0.054 3.946 16 C 0.452 3.548 17 O -0.604 6.604 18 N -0.592 5.592 19 C -0.327 4.327 20 H 0.057 0.943 21 C -0.013 4.013 22 N -0.934 5.934 23 Si 0.963 3.037 24 H -0.257 1.257 25 H -0.276 1.276 26 H -0.233 1.233 27 C 0.016 3.984 28 C 0.077 3.923 29 O -0.385 6.385 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.414 0.586 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.052 0.948 45 H 0.125 0.875 46 H 0.076 0.924 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.041 0.959 50 H 0.070 0.930 51 H 0.116 0.884 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.279 -14.069 0.616 32.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.095 4.095 4 H 0.075 0.925 5 C -0.209 4.209 6 C -0.172 4.172 7 C 0.297 3.703 8 O -0.460 6.460 9 N -0.371 5.371 10 C 0.012 3.988 11 C 0.031 3.969 12 H 0.096 0.904 13 C -0.102 4.102 14 N -0.257 5.257 15 C -0.077 4.077 16 C 0.240 3.760 17 O -0.488 6.488 18 N -0.234 5.234 19 C -0.456 4.456 20 H 0.075 0.925 21 C -0.212 4.212 22 N -0.575 5.575 23 Si 0.783 3.217 24 H -0.181 1.181 25 H -0.201 1.201 26 H -0.156 1.156 27 C -0.112 4.112 28 C 0.000 4.000 29 O -0.304 6.304 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.251 0.749 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.125 0.875 44 H 0.070 0.930 45 H 0.142 0.858 46 H 0.093 0.907 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.060 0.940 50 H 0.089 0.911 51 H 0.134 0.866 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -29.173 -14.384 0.945 32.540 hybrid contribution 0.782 1.512 -0.652 1.823 sum -28.391 -12.872 0.294 31.174 Atomic orbital electron populations 1.21826 0.95916 1.01881 1.01681 1.21564 0.96038 0.94869 1.02834 1.20892 0.93250 0.96759 0.98556 0.92507 1.21948 1.01301 1.00784 0.96830 1.21814 0.97216 0.91983 1.06177 1.21289 0.81654 0.92694 0.74713 1.90663 1.55594 1.48152 1.51615 1.45909 1.07867 1.09115 1.74221 1.21189 0.90614 0.84369 1.02583 1.22326 0.93909 0.92667 0.88013 0.90434 1.22787 0.86346 0.97446 1.03577 1.61716 1.11743 1.16850 1.35403 1.21854 0.90403 0.90928 1.04524 1.20794 0.90311 0.83650 0.81294 1.90525 1.73452 1.30526 1.54269 1.42048 1.05779 1.08151 1.67405 1.19000 0.81364 0.95425 1.49857 0.92497 1.26069 0.96033 1.02879 0.96174 1.69799 1.06834 1.30579 1.50240 0.85396 0.79490 0.76957 0.79870 1.18137 1.20110 1.15644 1.22827 1.01793 0.96740 0.89829 1.22600 0.80305 0.94303 1.02805 1.87959 1.23162 1.78697 1.40591 0.93337 0.92010 0.92707 0.91110 0.90949 0.92313 0.93341 0.92637 0.86908 0.86731 0.74924 0.89266 0.91825 0.87461 0.92991 0.85755 0.90652 0.77591 0.91170 0.94042 0.91120 0.86638 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.67 71.98 0.70 -0.78 16 2 C -0.12 -1.02 5.40 30.60 0.17 -0.86 16 3 C -0.08 -0.97 2.04 -10.79 -0.02 -0.99 16 4 H 0.06 0.97 7.95 -2.38 -0.02 0.95 16 5 C -0.15 -2.26 8.69 71.98 0.63 -1.63 16 6 C -0.13 -1.39 5.18 29.85 0.15 -1.23 16 7 C 0.51 8.93 7.55 87.66 0.66 9.59 16 8 O -0.58 -14.90 13.97 -3.01 -0.04 -14.95 16 9 N -0.72 -10.81 5.50 -463.06 -2.55 -13.36 16 10 C 0.14 2.33 5.35 86.38 0.46 2.79 16 11 C 0.09 1.66 2.84 30.63 0.09 1.75 16 12 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 13 C 0.03 0.54 4.93 86.32 0.43 0.97 16 14 N -0.53 -15.26 4.42 -899.76 -3.98 -19.23 16 15 C 0.05 1.61 5.45 85.56 0.47 2.07 16 16 C 0.45 19.85 7.35 87.66 0.64 20.49 16 17 O -0.60 -32.34 14.25 -3.07 -0.04 -32.38 16 18 N -0.59 -27.38 5.09 -306.99 -1.56 -28.94 16 19 C -0.33 -18.89 10.16 84.04 0.85 -18.04 16 20 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 22 N -0.93 -55.81 13.96 21.66 0.30 -55.51 16 23 Si 0.96 38.36 27.73 68.60 1.90 40.26 16 24 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 25 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.23 -7.82 6.52 99.48 0.65 -7.18 16 27 C 0.02 0.48 5.30 86.31 0.46 0.93 16 28 C 0.08 1.80 7.01 72.01 0.50 2.30 16 29 O -0.38 -8.29 10.42 -148.98 -1.55 -9.84 16 30 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.55 6.57 -2.39 -0.02 0.53 16 33 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.05 0.99 5.95 -2.39 -0.01 0.98 16 37 H 0.05 0.78 6.57 -2.39 -0.02 0.77 16 38 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.41 4.57 8.47 -92.71 -0.79 3.78 16 41 H 0.09 1.44 8.14 -2.38 -0.02 1.43 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.11 1.79 8.09 -2.39 -0.02 1.77 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.12 2.98 8.04 -2.39 -0.02 2.96 16 46 H 0.08 1.91 8.12 -2.38 -0.02 1.89 16 47 H 0.39 14.90 5.77 -92.70 -0.53 14.36 16 48 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 49 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.07 2.65 6.10 -2.38 -0.01 2.63 16 51 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 52 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -78.99 409.78 -1.33 -80.32 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.46 Total: 36.51 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 6.65 Total: 17.13 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -7.79 Total: -117.04 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -1.64 Total: -57.18 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.90 Total: 40.26 kcal Total: -78.99 -1.33 -80.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666697666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.908 kcal (2) G-P(sol) polarization free energy of solvation -78.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds