Wall clock time and date at job start Wed Apr 1 2020 00:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47004 * 2 1 4 4 H 1.09001 * 109.47409 * 305.06958 * 3 2 1 5 5 O 1.42893 * 109.47725 * 65.07259 * 3 2 1 6 6 C 1.42893 * 114.00373 * 259.08600 * 5 3 2 7 7 C 1.50707 * 109.46904 * 185.07560 * 3 2 1 8 8 O 1.21286 * 119.99971 * 244.99950 * 7 3 2 9 9 N 1.34774 * 120.00161 * 64.99357 * 7 3 2 10 10 C 1.46499 * 120.00242 * 180.02562 * 9 7 3 11 11 C 1.52994 * 109.57434 * 59.83934 * 10 9 7 12 12 C 1.53114 * 109.52651 * 180.02562 * 10 9 7 13 13 C 1.53041 * 109.31024 * 62.26897 * 12 10 9 14 14 N 1.46841 * 109.52327 * 59.16102 * 13 12 10 15 15 C 1.46905 * 111.00008 * 174.16181 * 14 13 12 16 16 C 1.50700 * 109.46752 * 190.00246 * 15 14 13 17 17 O 1.21290 * 120.00677 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99803 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00341 * 180.02562 * 18 16 15 20 20 H 1.07996 * 119.99650 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00201 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99677 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99879 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47223 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46984 * 119.99950 * 23 21 19 26 26 H 1.48496 * 109.46945 * 239.99647 * 23 21 19 27 27 C 1.46845 * 111.20199 * 298.25805 * 14 13 12 28 28 C 1.53037 * 109.52288 * 61.73780 * 27 14 13 29 29 H 1.08999 * 109.47499 * 174.24135 * 1 2 3 30 30 H 1.09003 * 109.47185 * 294.24186 * 1 2 3 31 31 H 1.09004 * 109.46887 * 54.23733 * 1 2 3 32 32 H 1.08997 * 109.46967 * 239.99346 * 2 1 3 33 33 H 1.09004 * 109.46804 * 119.99773 * 2 1 3 34 34 H 1.09002 * 109.47228 * 305.66309 * 6 5 3 35 35 H 1.09002 * 109.47235 * 65.65591 * 6 5 3 36 36 H 1.08997 * 109.47586 * 185.66382 * 6 5 3 37 37 H 0.97001 * 120.00072 * 0.02562 * 9 7 3 38 38 H 1.09001 * 109.47309 * 180.15760 * 11 10 9 39 39 H 1.09003 * 109.47534 * 300.16270 * 11 10 9 40 40 H 1.09007 * 109.47071 * 60.16473 * 11 10 9 41 41 H 1.09003 * 109.50306 * 302.31119 * 12 10 9 42 42 H 1.08994 * 109.50703 * 182.23292 * 12 10 9 43 43 H 1.09000 * 109.46284 * 179.17674 * 13 12 10 44 44 H 1.09006 * 109.46113 * 299.14415 * 13 12 10 45 45 H 1.08995 * 109.46870 * 310.00021 * 15 14 13 46 46 H 1.08998 * 109.47353 * 69.99872 * 15 14 13 47 47 H 0.97003 * 120.00005 * 359.97438 * 18 16 15 48 48 H 0.97002 * 119.99535 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.46746 * 181.76058 * 27 14 13 50 50 H 1.09005 * 109.46247 * 301.74018 * 27 14 13 51 51 H 1.09005 * 109.50202 * 60.76479 * 28 27 14 52 52 H 1.08996 * 109.50596 * 180.84156 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6044 1.9819 -0.8411 5 8 1.6635 2.0809 1.2217 6 6 0.5249 2.9361 1.1037 7 6 3.5418 1.4443 -0.1257 8 8 4.2261 1.8607 0.7850 9 7 4.1245 0.9831 -1.2501 10 6 5.5844 0.9844 -1.3721 11 6 6.1924 0.1266 -0.2606 12 6 5.9845 0.4145 -2.7357 13 6 5.4254 1.3112 -3.8427 14 7 5.9548 2.6719 -3.6864 15 6 5.5498 3.5267 -4.8104 16 6 6.3036 4.8301 -4.7471 17 8 7.0996 5.0278 -3.8535 18 7 6.0925 5.7767 -5.6831 19 6 6.7787 6.9623 -5.6259 20 1 7.4880 7.1378 -4.8307 21 6 6.5607 7.9384 -6.5906 22 7 5.6972 7.7248 -7.5579 23 14 7.4950 9.5540 -6.5123 24 1 8.4001 9.5458 -5.3350 25 1 8.2955 9.7234 -7.7515 26 1 6.5318 10.6773 -6.3878 27 6 5.5431 3.2580 -2.4045 28 6 6.1056 2.4194 -1.2546 29 1 -0.3634 -1.0224 -0.1031 30 1 -0.3634 0.4220 0.9371 31 1 -0.3633 0.6006 -0.8339 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.6969 3.6628 0.3096 35 1 -0.3551 2.3388 0.8649 36 1 0.3641 3.4593 2.0463 37 1 3.5773 0.6504 -1.9786 38 1 7.2786 0.1310 -0.3512 39 1 5.9071 0.5334 0.7096 40 1 5.8247 -0.8958 -0.3483 41 1 5.5791 -0.5916 -2.8428 42 1 7.0713 0.3787 -2.8106 43 1 5.7211 0.9158 -4.8145 44 1 4.3376 1.3348 -3.7762 45 1 5.7746 3.0222 -5.7500 46 1 4.4793 3.7228 -4.7504 47 1 5.4557 5.6189 -6.3975 48 1 5.5453 8.4061 -8.2315 49 1 5.9242 4.2765 -2.3316 50 1 4.4548 3.2723 -2.3446 51 1 7.1945 2.4157 -1.3056 52 1 5.7874 2.8461 -0.3034 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671402789.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:51 Heat of formation + Delta-G solvation = -114.146169 kcal Electronic energy + Delta-G solvation = -31582.675478 eV Core-core repulsion = 27389.337559 eV Total energy + Delta-G solvation = -4193.337919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.82440 -39.17357 -38.18767 -37.23310 -35.05486 -33.92667 -33.74726 -31.88361 -31.22288 -30.74387 -29.08262 -28.45406 -26.15735 -25.92057 -24.10180 -23.16346 -22.70754 -21.76259 -20.77665 -19.23723 -19.06314 -17.84645 -17.80290 -17.16580 -16.10429 -15.94539 -15.60118 -15.23023 -15.06784 -14.85888 -14.63274 -14.50839 -14.31158 -13.88941 -13.81077 -13.63802 -13.58312 -13.54809 -12.91049 -12.74336 -12.50717 -12.37071 -12.18391 -12.08021 -11.95453 -11.95230 -11.73500 -11.54502 -11.47454 -11.24674 -11.17598 -11.01299 -10.96634 -10.50584 -10.38565 -10.31934 -10.21335 -10.08628 -9.47076 -9.31094 -9.10079 -8.38858 -7.96058 -7.80768 -6.40993 -3.81385 2.52426 2.73462 3.16940 3.27507 3.35049 3.68852 3.91684 4.00880 4.25765 4.34978 4.43860 4.54844 4.68386 4.80784 4.82846 4.94229 4.95576 5.05388 5.06484 5.14379 5.24609 5.28506 5.29268 5.40046 5.40511 5.48199 5.53692 5.58757 5.64972 5.66612 5.70704 5.79388 5.80161 5.88854 5.89926 5.95930 6.04509 6.15108 6.24785 6.30244 6.44420 6.58355 6.62848 6.76148 7.32955 7.42554 7.47508 7.56625 8.08169 8.17183 8.63228 9.19685 9.55865 10.07960 10.76958 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.002585 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.394376 B =10828.000091 C =11705.989073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.136 4.136 3 C 0.071 3.929 4 H 0.085 0.915 5 O -0.356 6.356 6 C 0.024 3.976 7 C 0.512 3.488 8 O -0.511 6.511 9 N -0.719 5.719 10 C 0.176 3.824 11 C -0.161 4.161 12 C -0.115 4.115 13 C 0.055 3.945 14 N -0.513 5.513 15 C 0.047 3.953 16 C 0.444 3.556 17 O -0.575 6.575 18 N -0.566 5.566 19 C -0.296 4.296 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.059 3.941 28 C -0.122 4.122 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.395 0.605 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.025 0.975 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.102 0.898 50 H 0.016 0.984 51 H 0.079 0.921 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.806 -18.639 9.975 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.174 4.174 3 C 0.009 3.991 4 H 0.103 0.897 5 O -0.273 6.273 6 C -0.073 4.073 7 C 0.296 3.704 8 O -0.386 6.386 9 N -0.373 5.373 10 C 0.091 3.909 11 C -0.219 4.219 12 C -0.154 4.154 13 C -0.074 4.074 14 N -0.238 5.238 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.459 6.459 18 N -0.203 5.203 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.068 4.068 28 C -0.160 4.160 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.229 0.771 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.043 0.957 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.120 0.880 50 H 0.035 0.965 51 H 0.098 0.902 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.201 -18.116 11.284 23.655 hybrid contribution -1.424 0.708 -1.316 2.064 sum -11.625 -17.407 9.968 23.184 Atomic orbital electron populations 1.21849 0.94826 1.02273 1.02203 1.21932 0.97080 0.94845 1.03502 1.22080 0.92523 0.95163 0.89325 0.89681 1.88024 1.47823 1.62011 1.29440 1.23022 0.87966 0.93286 1.02984 1.20454 0.89717 0.77697 0.82504 1.90671 1.64401 1.44544 1.38947 1.46139 1.07709 1.65355 1.18104 1.20460 0.78492 0.96672 0.95304 1.22182 1.00869 0.98753 1.00063 1.21881 1.03187 0.97814 0.92473 1.22092 0.96204 0.90102 0.98982 1.61530 1.59698 1.00710 1.01836 1.21830 0.97364 0.94475 0.94791 1.19753 0.86914 0.85354 0.85036 1.90494 1.38587 1.80275 1.36506 1.41880 1.38739 1.14470 1.25189 1.19747 1.20313 0.91237 1.11295 0.87878 1.25251 0.97328 0.99902 0.95525 1.69622 1.34799 1.35692 1.14365 0.85814 0.79178 0.81117 0.78337 1.19204 1.20756 1.20809 1.22180 0.96056 1.00902 0.87706 1.21978 1.01675 0.93192 0.99193 0.92058 0.91944 0.92602 0.90573 0.90353 0.93693 0.93541 0.89240 0.77060 0.91635 0.90417 0.93001 0.91175 0.89158 0.90556 0.95679 0.89422 0.93790 0.77568 0.91984 0.87972 0.96535 0.90196 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.86 37.16 0.33 -0.56 16 2 C -0.14 -0.97 5.61 -26.73 -0.15 -1.12 16 3 C 0.07 0.68 2.68 -27.88 -0.07 0.61 16 4 H 0.09 0.69 7.60 -51.93 -0.39 0.29 16 5 O -0.36 -4.15 9.67 -55.09 -0.53 -4.68 16 6 C 0.02 0.20 10.48 101.05 1.06 1.26 16 7 C 0.51 6.28 6.60 -10.98 -0.07 6.21 16 8 O -0.51 -8.37 12.72 -14.31 -0.18 -8.55 16 9 N -0.72 -7.31 4.06 -47.49 -0.19 -7.50 16 10 C 0.18 2.03 0.66 -131.70 -0.09 1.94 16 11 C -0.16 -1.79 8.42 37.15 0.31 -1.47 16 12 C -0.12 -1.16 4.93 -26.65 -0.13 -1.30 16 13 C 0.05 0.63 5.30 -3.84 -0.02 0.61 16 14 N -0.51 -8.33 4.40 -236.11 -1.04 -9.37 16 15 C 0.05 0.82 5.45 -4.97 -0.03 0.80 16 16 C 0.44 10.46 7.46 -10.98 -0.08 10.38 16 17 O -0.57 -15.51 13.90 5.55 0.08 -15.43 16 18 N -0.57 -14.33 5.29 -10.96 -0.06 -14.38 16 19 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 23 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 C 0.06 1.00 4.96 -3.83 -0.02 0.98 16 28 C -0.12 -1.84 4.71 -26.65 -0.13 -1.97 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.39 6.58 -51.93 -0.34 0.05 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.42 7.77 -51.93 -0.40 0.01 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.04 0.36 7.99 -51.93 -0.41 -0.06 16 35 H 0.05 0.29 6.00 -51.93 -0.31 -0.02 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.40 3.01 7.18 -40.82 -0.29 2.72 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.04 6.16 -51.93 -0.32 0.72 16 40 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.08 0.82 8.02 -51.93 -0.42 0.40 16 44 H 0.03 0.26 7.02 -51.93 -0.36 -0.11 16 45 H 0.09 1.38 7.99 -51.93 -0.41 0.97 16 46 H 0.04 0.72 8.12 -51.93 -0.42 0.29 16 47 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.10 2.17 5.78 -51.93 -0.30 1.87 16 50 H 0.02 0.27 7.69 -51.93 -0.40 -0.13 16 51 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 52 H 0.08 1.42 6.14 -51.93 -0.32 1.10 16 LS Contribution 401.94 15.07 6.06 6.06 Total: -1.00 -33.88 401.94 -8.25 -42.13 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -8.75 Total: 11.01 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 0.67 Total: 8.42 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.56 Total: -55.11 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.64 Total: -28.66 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.88 -8.25 -42.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671402789.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.013 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds