Wall clock time and date at job start Wed Apr 1 2020 00:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47004 * 2 1 4 4 H 1.09001 * 109.47409 * 305.06958 * 3 2 1 5 5 O 1.42893 * 109.47725 * 65.07259 * 3 2 1 6 6 C 1.42893 * 114.00373 * 259.08600 * 5 3 2 7 7 C 1.50707 * 109.46904 * 185.07560 * 3 2 1 8 8 O 1.21286 * 119.99971 * 244.99950 * 7 3 2 9 9 N 1.34774 * 120.00161 * 64.99357 * 7 3 2 10 10 C 1.46499 * 120.00242 * 180.02562 * 9 7 3 11 11 C 1.52994 * 109.57434 * 59.83934 * 10 9 7 12 12 C 1.53114 * 109.52651 * 180.02562 * 10 9 7 13 13 C 1.53041 * 109.31024 * 62.26897 * 12 10 9 14 14 N 1.46841 * 109.52327 * 59.16102 * 13 12 10 15 15 C 1.46905 * 111.00008 * 174.16181 * 14 13 12 16 16 C 1.50700 * 109.46752 * 190.00246 * 15 14 13 17 17 O 1.21290 * 120.00677 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99803 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00341 * 180.02562 * 18 16 15 20 20 H 1.07996 * 119.99650 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00201 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99677 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99879 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47223 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46984 * 119.99950 * 23 21 19 26 26 H 1.48496 * 109.46945 * 239.99647 * 23 21 19 27 27 C 1.46845 * 111.20199 * 298.25805 * 14 13 12 28 28 C 1.53037 * 109.52288 * 61.73780 * 27 14 13 29 29 H 1.08999 * 109.47499 * 174.24135 * 1 2 3 30 30 H 1.09003 * 109.47185 * 294.24186 * 1 2 3 31 31 H 1.09004 * 109.46887 * 54.23733 * 1 2 3 32 32 H 1.08997 * 109.46967 * 239.99346 * 2 1 3 33 33 H 1.09004 * 109.46804 * 119.99773 * 2 1 3 34 34 H 1.09002 * 109.47228 * 305.66309 * 6 5 3 35 35 H 1.09002 * 109.47235 * 65.65591 * 6 5 3 36 36 H 1.08997 * 109.47586 * 185.66382 * 6 5 3 37 37 H 0.97001 * 120.00072 * 0.02562 * 9 7 3 38 38 H 1.09001 * 109.47309 * 180.15760 * 11 10 9 39 39 H 1.09003 * 109.47534 * 300.16270 * 11 10 9 40 40 H 1.09007 * 109.47071 * 60.16473 * 11 10 9 41 41 H 1.09003 * 109.50306 * 302.31119 * 12 10 9 42 42 H 1.08994 * 109.50703 * 182.23292 * 12 10 9 43 43 H 1.09000 * 109.46284 * 179.17674 * 13 12 10 44 44 H 1.09006 * 109.46113 * 299.14415 * 13 12 10 45 45 H 1.08995 * 109.46870 * 310.00021 * 15 14 13 46 46 H 1.08998 * 109.47353 * 69.99872 * 15 14 13 47 47 H 0.97003 * 120.00005 * 359.97438 * 18 16 15 48 48 H 0.97002 * 119.99535 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.46746 * 181.76058 * 27 14 13 50 50 H 1.09005 * 109.46247 * 301.74018 * 27 14 13 51 51 H 1.09005 * 109.50202 * 60.76479 * 28 27 14 52 52 H 1.08996 * 109.50596 * 180.84156 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6044 1.9819 -0.8411 5 8 1.6635 2.0809 1.2217 6 6 0.5249 2.9361 1.1037 7 6 3.5418 1.4443 -0.1257 8 8 4.2261 1.8607 0.7850 9 7 4.1245 0.9831 -1.2501 10 6 5.5844 0.9844 -1.3721 11 6 6.1924 0.1266 -0.2606 12 6 5.9845 0.4145 -2.7357 13 6 5.4254 1.3112 -3.8427 14 7 5.9548 2.6719 -3.6864 15 6 5.5498 3.5267 -4.8104 16 6 6.3036 4.8301 -4.7471 17 8 7.0996 5.0278 -3.8535 18 7 6.0925 5.7767 -5.6831 19 6 6.7787 6.9623 -5.6259 20 1 7.4880 7.1378 -4.8307 21 6 6.5607 7.9384 -6.5906 22 7 5.6972 7.7248 -7.5579 23 14 7.4950 9.5540 -6.5123 24 1 8.4001 9.5458 -5.3350 25 1 8.2955 9.7234 -7.7515 26 1 6.5318 10.6773 -6.3878 27 6 5.5431 3.2580 -2.4045 28 6 6.1056 2.4194 -1.2546 29 1 -0.3634 -1.0224 -0.1031 30 1 -0.3634 0.4220 0.9371 31 1 -0.3633 0.6006 -0.8339 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.6969 3.6628 0.3096 35 1 -0.3551 2.3388 0.8649 36 1 0.3641 3.4593 2.0463 37 1 3.5773 0.6504 -1.9786 38 1 7.2786 0.1310 -0.3512 39 1 5.9071 0.5334 0.7096 40 1 5.8247 -0.8958 -0.3483 41 1 5.5791 -0.5916 -2.8428 42 1 7.0713 0.3787 -2.8106 43 1 5.7211 0.9158 -4.8145 44 1 4.3376 1.3348 -3.7762 45 1 5.7746 3.0222 -5.7500 46 1 4.4793 3.7228 -4.7504 47 1 5.4557 5.6189 -6.3975 48 1 5.5453 8.4061 -8.2315 49 1 5.9242 4.2765 -2.3316 50 1 4.4548 3.2723 -2.3446 51 1 7.1945 2.4157 -1.3056 52 1 5.7874 2.8461 -0.3034 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671402789.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:50 Heat of formation + Delta-G solvation = -139.614678 kcal Electronic energy + Delta-G solvation = -31583.779875 eV Core-core repulsion = 27389.337559 eV Total energy + Delta-G solvation = -4194.442316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.81145 -40.44925 -39.53515 -38.35517 -36.35648 -35.72309 -34.54490 -33.29653 -32.74456 -31.84634 -30.30590 -29.13468 -27.68127 -26.66225 -25.78682 -24.28086 -23.41962 -22.76678 -21.66983 -21.03108 -20.14745 -19.86397 -18.65399 -17.95812 -17.69898 -16.89809 -16.66846 -16.58669 -16.39470 -16.08721 -15.91808 -15.58905 -15.50386 -15.26300 -15.05401 -14.94638 -14.64614 -14.19684 -14.00004 -13.96632 -13.54656 -13.47820 -13.29630 -13.20931 -13.01179 -12.95111 -12.87101 -12.68104 -12.54011 -12.41241 -12.35001 -12.30557 -12.14595 -12.10865 -11.74792 -11.66626 -11.49397 -11.36623 -10.89643 -10.31748 -10.21225 -10.03494 -9.95577 -9.13153 -8.47034 -5.94971 1.35086 1.40255 1.54211 1.60798 1.91774 2.06761 2.28083 2.79403 2.98463 3.19968 3.38825 3.57825 3.74618 3.81324 3.84164 3.93812 3.97365 4.21609 4.27524 4.32618 4.33769 4.38781 4.48184 4.49505 4.50937 4.55375 4.58600 4.63430 4.78724 4.79219 4.81412 4.83080 4.85963 4.97612 5.00967 5.05988 5.12381 5.15365 5.20488 5.29781 5.34627 5.36962 5.41125 5.62066 5.91466 6.05953 6.10319 6.30829 6.61636 6.62481 7.14081 7.29975 7.57720 8.14677 8.70662 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.002585 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.394376 B =10828.000091 C =11705.989073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.071 3.929 4 H 0.104 0.896 5 O -0.389 6.389 6 C 0.019 3.981 7 C 0.505 3.495 8 O -0.561 6.561 9 N -0.704 5.704 10 C 0.181 3.819 11 C -0.155 4.155 12 C -0.107 4.107 13 C 0.051 3.949 14 N -0.531 5.531 15 C 0.059 3.941 16 C 0.439 3.561 17 O -0.616 6.616 18 N -0.575 5.575 19 C -0.330 4.330 20 H 0.075 0.925 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.276 1.276 25 H -0.269 1.269 26 H -0.271 1.271 27 C 0.070 3.930 28 C -0.115 4.115 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.412 0.588 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.049 0.951 45 H 0.116 0.884 46 H 0.065 0.935 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.049 0.951 50 H 0.024 0.976 51 H 0.062 0.938 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.583 -20.949 8.211 26.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C 0.009 3.991 4 H 0.122 0.878 5 O -0.307 6.307 6 C -0.076 4.076 7 C 0.291 3.709 8 O -0.439 6.439 9 N -0.359 5.359 10 C 0.095 3.905 11 C -0.213 4.213 12 C -0.145 4.145 13 C -0.076 4.076 14 N -0.256 5.256 15 C -0.072 4.072 16 C 0.227 3.773 17 O -0.502 6.502 18 N -0.213 5.213 19 C -0.460 4.460 20 H 0.093 0.907 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.201 1.201 25 H -0.194 1.194 26 H -0.196 1.196 27 C -0.058 4.058 28 C -0.154 4.154 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.250 0.750 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.115 0.885 44 H 0.067 0.933 45 H 0.134 0.866 46 H 0.082 0.918 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.067 0.933 50 H 0.042 0.958 51 H 0.081 0.919 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.022 -20.465 9.471 25.555 hybrid contribution -0.863 1.425 -0.720 1.814 sum -12.885 -19.041 8.751 24.600 Atomic orbital electron populations 1.21838 0.93613 1.03244 1.02227 1.21920 0.98036 0.92842 1.03876 1.22243 0.90496 0.96979 0.89334 0.87826 1.87982 1.49143 1.62750 1.30858 1.23171 0.87847 0.93350 1.03268 1.21090 0.90932 0.76692 0.82166 1.90661 1.65701 1.46729 1.40779 1.45980 1.07248 1.64553 1.18090 1.20338 0.79249 0.94015 0.96856 1.22104 1.01155 0.99654 0.98350 1.21882 1.03027 0.99324 0.90290 1.22296 0.97632 0.87077 1.00603 1.61466 1.60974 1.02586 1.00608 1.21718 0.97277 0.91559 0.96624 1.20908 0.86209 0.86824 0.83407 1.90480 1.40411 1.81452 1.37817 1.41938 1.39012 1.14402 1.25976 1.19644 1.21407 0.93293 1.11640 0.90702 1.25980 0.97892 1.02509 0.94799 1.69670 1.35140 1.36776 1.14531 0.84921 0.78067 0.77401 0.78255 1.20112 1.19424 1.19599 1.21886 0.96076 0.98605 0.89184 1.21843 1.00582 0.95781 0.97191 0.90821 0.92817 0.91486 0.88244 0.91885 0.93763 0.91290 0.88984 0.74996 0.91335 0.93202 0.90576 0.87032 0.89844 0.88526 0.93319 0.86595 0.91763 0.76998 0.91326 0.93256 0.95816 0.91935 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.86 71.98 0.64 -0.69 16 2 C -0.13 -1.52 5.61 30.59 0.17 -1.35 16 3 C 0.07 1.27 2.68 29.85 0.08 1.35 16 4 H 0.10 1.42 7.60 -2.39 -0.02 1.41 16 5 O -0.39 -9.02 9.67 -129.99 -1.26 -10.27 16 6 C 0.02 0.31 10.48 113.37 1.19 1.49 16 7 C 0.50 12.10 6.60 87.66 0.58 12.67 16 8 O -0.56 -19.13 12.72 15.94 0.20 -18.93 16 9 N -0.70 -12.75 4.06 -422.56 -1.72 -14.47 16 10 C 0.18 3.91 0.66 3.68 0.00 3.91 16 11 C -0.15 -3.27 8.42 71.98 0.61 -2.67 16 12 C -0.11 -1.77 4.93 30.65 0.15 -1.62 16 13 C 0.05 0.98 5.30 86.33 0.46 1.44 16 14 N -0.53 -16.54 4.40 -900.93 -3.96 -20.50 16 15 C 0.06 2.00 5.45 85.56 0.47 2.47 16 16 C 0.44 21.11 7.46 87.66 0.65 21.77 16 17 O -0.62 -34.85 13.90 -3.06 -0.04 -34.89 16 18 N -0.58 -29.74 5.29 -306.98 -1.62 -31.36 16 19 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 20 H 0.07 4.66 7.16 -2.91 -0.02 4.63 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -49.71 13.05 21.66 0.28 -49.43 16 23 Si 0.99 43.61 29.55 68.60 2.03 45.63 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 C 0.07 2.45 4.96 86.33 0.43 2.88 16 28 C -0.12 -3.62 4.71 30.65 0.14 -3.48 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.57 6.58 -2.39 -0.02 0.55 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.69 7.77 -2.39 -0.02 0.67 16 33 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.04 0.68 7.99 -2.39 -0.02 0.66 16 35 H 0.07 0.74 6.00 -2.39 -0.01 0.73 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.41 4.57 7.18 -92.71 -0.67 3.91 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.05 1.37 6.16 -2.39 -0.01 1.35 16 40 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.10 1.57 8.02 -2.39 -0.02 1.55 16 44 H 0.05 0.75 7.02 -2.38 -0.02 0.73 16 45 H 0.12 3.29 7.99 -2.39 -0.02 3.28 16 46 H 0.06 1.93 8.12 -2.39 -0.02 1.91 16 47 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 48 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 49 H 0.05 2.24 5.78 -2.39 -0.01 2.23 16 50 H 0.02 0.77 7.69 -2.38 -0.02 0.75 16 51 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 52 H 0.06 2.14 6.14 -2.39 -0.01 2.13 16 Total: -1.00 -79.13 401.94 0.29 -78.84 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -0.46 Total: 35.62 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 6.85 Total: 19.77 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -7.02 Total: -115.77 kcal Atomic # 8 Polarization: -62.99 SS G_CDS: -1.10 Total: -64.09 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -79.13 0.29 -78.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671402789.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.778 kcal (2) G-P(sol) polarization free energy of solvation -79.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds