Wall clock time and date at job start Wed Apr 1 2020 00:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47057 * 2 1 4 4 H 1.09000 * 109.47378 * 54.80132 * 3 2 1 5 5 O 1.42896 * 109.46846 * 294.80246 * 3 2 1 6 6 C 1.42899 * 114.00047 * 110.71186 * 5 3 2 7 7 C 1.50702 * 109.47028 * 174.80249 * 3 2 1 8 8 O 1.21284 * 119.99731 * 114.99478 * 7 3 2 9 9 N 1.34771 * 120.00357 * 294.99705 * 7 3 2 10 10 C 1.46497 * 120.00266 * 179.97438 * 9 7 3 11 11 C 1.53005 * 109.52216 * 60.00191 * 10 9 7 12 12 C 1.53121 * 109.52664 * 299.87495 * 10 9 7 13 13 C 1.53167 * 109.20590 * 297.68765 * 12 10 9 14 14 N 1.46844 * 109.55804 * 300.85763 * 13 12 10 15 15 C 1.46904 * 110.99886 * 185.84053 * 14 13 12 16 16 C 1.50698 * 109.46834 * 65.79275 * 15 14 13 17 17 O 1.21287 * 120.00593 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99793 * 179.97438 * 16 15 14 19 19 C 1.37091 * 120.00007 * 179.97438 * 18 16 15 20 20 H 1.08006 * 120.00300 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00014 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00004 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99767 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47542 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46955 * 120.00355 * 23 21 19 26 26 H 1.48503 * 109.47019 * 239.99829 * 23 21 19 27 27 C 1.46844 * 111.19936 * 61.74660 * 14 13 12 28 28 C 1.53038 * 109.51956 * 298.25844 * 27 14 13 29 29 H 1.09007 * 109.46882 * 181.75283 * 1 2 3 30 30 H 1.08996 * 109.47653 * 301.75058 * 1 2 3 31 31 H 1.09000 * 109.47134 * 61.75794 * 1 2 3 32 32 H 1.09006 * 109.47130 * 119.99686 * 2 1 3 33 33 H 1.08994 * 109.47054 * 239.99363 * 2 1 3 34 34 H 1.08992 * 109.47307 * 295.65097 * 6 5 3 35 35 H 1.09001 * 109.46716 * 55.65294 * 6 5 3 36 36 H 1.09007 * 109.47053 * 175.65026 * 6 5 3 37 37 H 0.97007 * 119.99641 * 0.02562 * 9 7 3 38 38 H 1.09005 * 109.47092 * 59.99711 * 11 10 9 39 39 H 1.08995 * 109.47046 * 179.97438 * 11 10 9 40 40 H 1.08994 * 109.46729 * 300.00199 * 11 10 9 41 41 H 1.09005 * 109.49859 * 57.68815 * 12 10 9 42 42 H 1.08994 * 109.50358 * 177.80305 * 12 10 9 43 43 H 1.09003 * 109.44283 * 180.82984 * 13 12 10 44 44 H 1.09004 * 109.44711 * 60.88827 * 13 12 10 45 45 H 1.08995 * 109.46984 * 185.78634 * 15 14 13 46 46 H 1.08999 * 109.47153 * 305.78728 * 15 14 13 47 47 H 0.96996 * 119.99640 * 0.02562 * 18 16 15 48 48 H 0.96992 * 120.00139 * 180.02562 * 22 21 19 49 49 H 1.08994 * 109.46151 * 178.24642 * 27 14 13 50 50 H 1.08995 * 109.46177 * 58.26851 * 27 14 13 51 51 H 1.09003 * 109.50739 * 299.23617 * 28 27 14 52 52 H 1.09003 * 109.53896 * 179.13906 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6026 1.9825 0.8398 5 8 1.6659 2.0799 -1.2230 6 6 0.6746 3.0975 -1.0685 7 6 3.5415 1.4444 0.1287 8 8 4.2275 1.8601 -0.7810 9 7 4.1219 0.9843 1.2546 10 6 5.5816 0.9856 1.3795 11 6 6.1041 2.4182 1.2542 12 6 6.1907 0.1202 0.2729 13 6 5.7110 -1.3246 0.4415 14 7 6.1163 -1.8264 1.7607 15 6 5.7942 -3.2526 1.9031 16 6 6.6274 -4.0546 0.9369 17 8 7.4120 -3.4934 0.2017 18 7 6.5008 -5.3957 0.8899 19 6 7.2584 -6.1252 0.0106 20 1 7.9564 -5.6254 -0.6448 21 6 7.1274 -7.5078 -0.0383 22 7 6.2771 -8.1158 0.7579 23 14 8.1592 -8.5018 -1.2370 24 1 9.0319 -7.5870 -2.0159 25 1 9.0008 -9.4663 -0.4841 26 1 7.2656 -9.2425 -2.1633 27 6 5.5055 -1.0387 2.8390 28 6 5.9791 0.4133 2.7430 29 1 -0.3633 -1.0273 0.0314 30 1 -0.3634 0.5407 0.8738 31 1 -0.3633 0.4863 -0.9053 32 1 1.8933 -0.5138 0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 -0.2542 2.6494 -0.7158 35 1 1.0206 3.8346 -0.3439 36 1 0.5015 3.5848 -2.0281 37 1 3.5732 0.6514 1.9820 38 1 5.6717 3.0330 2.0437 39 1 7.1901 2.4183 1.3477 40 1 5.8226 2.8239 0.2825 41 1 5.8761 0.4986 -0.6997 42 1 7.2780 0.1528 0.3423 43 1 6.1541 -1.9471 -0.3358 44 1 4.6246 -1.3583 0.3581 45 1 6.0098 -3.5737 2.9221 46 1 4.7371 -3.4095 1.6886 47 1 5.8731 -5.8444 1.4776 48 1 6.1859 -9.0808 0.7241 49 1 5.7996 -1.4536 3.8031 50 1 4.4202 -1.0738 2.7444 51 1 7.0631 0.4506 2.8513 52 1 5.5139 1.0016 3.5340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671402790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:55 Heat of formation + Delta-G solvation = -114.812189 kcal Electronic energy + Delta-G solvation = -31739.852543 eV Core-core repulsion = 27546.485743 eV Total energy + Delta-G solvation = -4193.366800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.82496 -39.14687 -38.16537 -37.21050 -35.04068 -33.93219 -33.75131 -31.86398 -31.20731 -30.72812 -29.05490 -28.32723 -26.19348 -25.99895 -24.09294 -23.14881 -22.64401 -21.75853 -20.73151 -19.22701 -19.06169 -17.83238 -17.82543 -17.12173 -16.14362 -15.87690 -15.51622 -15.23589 -15.06515 -14.81895 -14.70626 -14.44912 -14.28575 -13.88368 -13.80119 -13.71028 -13.57635 -13.52896 -12.89703 -12.70748 -12.52288 -12.30801 -12.08713 -12.03945 -11.95775 -11.89001 -11.71025 -11.54761 -11.46685 -11.22475 -11.15393 -11.00423 -10.95142 -10.49819 -10.39906 -10.31575 -10.20231 -10.15795 -9.45721 -9.27617 -9.09814 -8.37379 -7.94598 -7.79122 -6.39627 -3.79953 2.50876 2.77811 3.18087 3.28595 3.36178 3.64950 3.93170 4.02145 4.27085 4.37477 4.49218 4.54763 4.69112 4.81823 4.88605 4.94806 4.95666 5.01860 5.06696 5.17558 5.25625 5.29980 5.32681 5.37281 5.40969 5.52946 5.58497 5.61496 5.68268 5.70641 5.77629 5.80319 5.89255 5.90206 5.91329 5.96402 6.05005 6.16466 6.23636 6.31477 6.45901 6.58743 6.64618 6.75207 7.34477 7.42995 7.48961 7.57944 8.09536 8.17412 8.64692 9.21093 9.57331 10.09471 10.78358 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.002701 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.562583 B =10363.155770 C =11356.194529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.134 4.134 3 C 0.073 3.927 4 H 0.085 0.915 5 O -0.354 6.354 6 C 0.027 3.973 7 C 0.507 3.493 8 O -0.512 6.512 9 N -0.719 5.719 10 C 0.175 3.825 11 C -0.161 4.161 12 C -0.122 4.122 13 C 0.059 3.941 14 N -0.513 5.513 15 C 0.047 3.953 16 C 0.444 3.556 17 O -0.575 6.575 18 N -0.566 5.566 19 C -0.296 4.296 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.055 3.945 28 C -0.115 4.115 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.041 0.959 36 H 0.089 0.911 37 H 0.395 0.605 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.019 0.981 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.076 0.924 50 H 0.025 0.975 51 H 0.090 0.910 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.123 20.085 6.586 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 C 0.011 3.989 4 H 0.103 0.897 5 O -0.272 6.272 6 C -0.069 4.069 7 C 0.292 3.708 8 O -0.387 6.387 9 N -0.373 5.373 10 C 0.090 3.910 11 C -0.219 4.219 12 C -0.160 4.160 13 C -0.069 4.069 14 N -0.238 5.238 15 C -0.084 4.084 16 C 0.230 3.770 17 O -0.459 6.459 18 N -0.203 5.203 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.755 3.245 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.074 4.074 28 C -0.154 4.154 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.229 0.771 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.120 0.880 44 H 0.037 0.963 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.094 0.906 50 H 0.043 0.957 51 H 0.108 0.892 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.536 20.580 5.271 24.175 hybrid contribution -1.298 -1.128 0.514 1.795 sum -12.834 19.452 5.786 24.012 Atomic orbital electron populations 1.21773 0.94694 1.02476 1.01886 1.21878 0.97126 0.94321 1.03878 1.22086 0.92174 0.95574 0.89017 0.89741 1.88053 1.58758 1.52306 1.28040 1.22948 0.90832 0.90310 1.02826 1.20647 0.90038 0.77749 0.82413 1.90668 1.64310 1.44956 1.38726 1.46164 1.07687 1.65259 1.18226 1.20466 0.78585 0.95682 0.96253 1.22183 1.01223 0.95212 1.03245 1.21996 1.01333 0.93732 0.98943 1.22204 0.96603 0.96032 0.92036 1.61527 1.58874 1.01032 1.02350 1.21827 0.97594 0.88577 1.00450 1.19752 0.87139 0.82933 0.87215 1.90494 1.40150 1.70092 1.45121 1.41875 1.37750 1.04764 1.35890 1.19746 1.18690 0.88744 1.15387 0.87882 1.25248 0.97606 0.96963 0.98186 1.69616 1.35992 1.10322 1.38560 0.85817 0.79405 0.79415 0.79823 1.19205 1.20780 1.20803 1.22084 0.95858 0.93668 0.95750 1.21882 1.03336 0.95074 0.95068 0.91895 0.92859 0.92042 0.90542 0.90070 0.93758 0.94011 0.89260 0.77070 0.93089 0.91619 0.90475 0.89717 0.90254 0.87998 0.96328 0.89456 0.93751 0.77571 0.91989 0.90589 0.95664 0.89180 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.31 37.16 0.35 -0.73 16 2 C -0.13 -1.19 5.61 -26.73 -0.15 -1.34 16 3 C 0.07 0.70 2.65 -27.88 -0.07 0.63 16 4 H 0.08 0.57 7.59 -51.93 -0.39 0.18 16 5 O -0.35 -4.06 9.49 -55.09 -0.52 -4.58 16 6 C 0.03 0.20 10.48 101.05 1.06 1.26 16 7 C 0.51 6.19 6.60 -10.99 -0.07 6.12 16 8 O -0.51 -8.35 12.72 -14.31 -0.18 -8.53 16 9 N -0.72 -7.29 4.06 -47.49 -0.19 -7.49 16 10 C 0.18 2.02 0.66 -131.69 -0.09 1.93 16 11 C -0.16 -1.78 8.41 37.16 0.31 -1.47 16 12 C -0.12 -1.84 4.73 -26.58 -0.13 -1.97 16 13 C 0.06 1.00 4.96 -3.77 -0.02 0.98 16 14 N -0.51 -8.33 4.40 -236.04 -1.04 -9.37 16 15 C 0.05 0.83 5.45 -4.97 -0.03 0.80 16 16 C 0.44 10.48 7.46 -10.98 -0.08 10.40 16 17 O -0.57 -15.54 13.90 5.55 0.08 -15.46 16 18 N -0.57 -14.36 5.29 -10.96 -0.06 -14.42 16 19 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 20 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 23 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.05 0.64 5.30 -3.83 -0.02 0.62 16 28 C -0.12 -1.17 4.93 -26.65 -0.13 -1.30 16 29 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.46 7.04 -51.93 -0.37 0.10 16 32 H 0.08 0.59 7.76 -51.93 -0.40 0.19 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.25 7.06 -51.93 -0.37 -0.12 16 35 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.39 3.01 7.18 -40.82 -0.29 2.71 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.03 6.17 -51.93 -0.32 0.71 16 41 H 0.08 1.43 6.13 -51.93 -0.32 1.12 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.10 2.17 5.78 -51.93 -0.30 1.87 16 44 H 0.02 0.30 7.69 -51.93 -0.40 -0.10 16 45 H 0.09 1.38 7.99 -51.93 -0.41 0.96 16 46 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 47 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.08 0.81 8.01 -51.93 -0.42 0.40 16 50 H 0.03 0.26 7.02 -51.93 -0.36 -0.11 16 51 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 52 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 403.75 15.07 6.08 6.08 Total: -1.00 -33.96 403.75 -8.28 -42.24 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -8.84 Total: 11.25 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 0.69 Total: 7.98 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.56 Total: -55.21 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.63 Total: -28.57 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.96 -8.28 -42.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671402790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.577 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds