Wall clock time and date at job start Wed Apr 1 2020 00:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47057 * 2 1 4 4 H 1.09000 * 109.47378 * 54.80132 * 3 2 1 5 5 O 1.42896 * 109.46846 * 294.80246 * 3 2 1 6 6 C 1.42899 * 114.00047 * 110.71186 * 5 3 2 7 7 C 1.50702 * 109.47028 * 174.80249 * 3 2 1 8 8 O 1.21284 * 119.99731 * 114.99478 * 7 3 2 9 9 N 1.34771 * 120.00357 * 294.99705 * 7 3 2 10 10 C 1.46497 * 120.00266 * 179.97438 * 9 7 3 11 11 C 1.53005 * 109.52216 * 60.00191 * 10 9 7 12 12 C 1.53121 * 109.52664 * 299.87495 * 10 9 7 13 13 C 1.53167 * 109.20590 * 297.68765 * 12 10 9 14 14 N 1.46844 * 109.55804 * 300.85763 * 13 12 10 15 15 C 1.46904 * 110.99886 * 185.84053 * 14 13 12 16 16 C 1.50698 * 109.46834 * 65.79275 * 15 14 13 17 17 O 1.21287 * 120.00593 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99793 * 179.97438 * 16 15 14 19 19 C 1.37091 * 120.00007 * 179.97438 * 18 16 15 20 20 H 1.08006 * 120.00300 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00014 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00004 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99767 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47542 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46955 * 120.00355 * 23 21 19 26 26 H 1.48503 * 109.47019 * 239.99829 * 23 21 19 27 27 C 1.46844 * 111.19936 * 61.74660 * 14 13 12 28 28 C 1.53038 * 109.51956 * 298.25844 * 27 14 13 29 29 H 1.09007 * 109.46882 * 181.75283 * 1 2 3 30 30 H 1.08996 * 109.47653 * 301.75058 * 1 2 3 31 31 H 1.09000 * 109.47134 * 61.75794 * 1 2 3 32 32 H 1.09006 * 109.47130 * 119.99686 * 2 1 3 33 33 H 1.08994 * 109.47054 * 239.99363 * 2 1 3 34 34 H 1.08992 * 109.47307 * 295.65097 * 6 5 3 35 35 H 1.09001 * 109.46716 * 55.65294 * 6 5 3 36 36 H 1.09007 * 109.47053 * 175.65026 * 6 5 3 37 37 H 0.97007 * 119.99641 * 0.02562 * 9 7 3 38 38 H 1.09005 * 109.47092 * 59.99711 * 11 10 9 39 39 H 1.08995 * 109.47046 * 179.97438 * 11 10 9 40 40 H 1.08994 * 109.46729 * 300.00199 * 11 10 9 41 41 H 1.09005 * 109.49859 * 57.68815 * 12 10 9 42 42 H 1.08994 * 109.50358 * 177.80305 * 12 10 9 43 43 H 1.09003 * 109.44283 * 180.82984 * 13 12 10 44 44 H 1.09004 * 109.44711 * 60.88827 * 13 12 10 45 45 H 1.08995 * 109.46984 * 185.78634 * 15 14 13 46 46 H 1.08999 * 109.47153 * 305.78728 * 15 14 13 47 47 H 0.96996 * 119.99640 * 0.02562 * 18 16 15 48 48 H 0.96992 * 120.00139 * 180.02562 * 22 21 19 49 49 H 1.08994 * 109.46151 * 178.24642 * 27 14 13 50 50 H 1.08995 * 109.46177 * 58.26851 * 27 14 13 51 51 H 1.09003 * 109.50739 * 299.23617 * 28 27 14 52 52 H 1.09003 * 109.53896 * 179.13906 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6026 1.9825 0.8398 5 8 1.6659 2.0799 -1.2230 6 6 0.6746 3.0975 -1.0685 7 6 3.5415 1.4444 0.1287 8 8 4.2275 1.8601 -0.7810 9 7 4.1219 0.9843 1.2546 10 6 5.5816 0.9856 1.3795 11 6 6.1041 2.4182 1.2542 12 6 6.1907 0.1202 0.2729 13 6 5.7110 -1.3246 0.4415 14 7 6.1163 -1.8264 1.7607 15 6 5.7942 -3.2526 1.9031 16 6 6.6274 -4.0546 0.9369 17 8 7.4120 -3.4934 0.2017 18 7 6.5008 -5.3957 0.8899 19 6 7.2584 -6.1252 0.0106 20 1 7.9564 -5.6254 -0.6448 21 6 7.1274 -7.5078 -0.0383 22 7 6.2771 -8.1158 0.7579 23 14 8.1592 -8.5018 -1.2370 24 1 9.0319 -7.5870 -2.0159 25 1 9.0008 -9.4663 -0.4841 26 1 7.2656 -9.2425 -2.1633 27 6 5.5055 -1.0387 2.8390 28 6 5.9791 0.4133 2.7430 29 1 -0.3633 -1.0273 0.0314 30 1 -0.3634 0.5407 0.8738 31 1 -0.3633 0.4863 -0.9053 32 1 1.8933 -0.5138 0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 -0.2542 2.6494 -0.7158 35 1 1.0206 3.8346 -0.3439 36 1 0.5015 3.5848 -2.0281 37 1 3.5732 0.6514 1.9820 38 1 5.6717 3.0330 2.0437 39 1 7.1901 2.4183 1.3477 40 1 5.8226 2.8239 0.2825 41 1 5.8761 0.4986 -0.6997 42 1 7.2780 0.1528 0.3423 43 1 6.1541 -1.9471 -0.3358 44 1 4.6246 -1.3583 0.3581 45 1 6.0098 -3.5737 2.9221 46 1 4.7371 -3.4095 1.6886 47 1 5.8731 -5.8444 1.4776 48 1 6.1859 -9.0808 0.7241 49 1 5.7996 -1.4536 3.8031 50 1 4.4202 -1.0738 2.7444 51 1 7.0631 0.4506 2.8513 52 1 5.5139 1.0016 3.5340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671402790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:54 Heat of formation + Delta-G solvation = -140.389280 kcal Electronic energy + Delta-G solvation = -31740.961649 eV Core-core repulsion = 27546.485743 eV Total energy + Delta-G solvation = -4194.475906 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.81045 -40.43550 -39.51078 -38.31824 -36.34740 -35.71566 -34.62201 -33.29507 -32.75342 -31.83281 -30.28842 -28.99059 -27.67884 -26.74218 -25.78650 -24.27506 -23.43535 -22.78821 -21.62358 -21.02375 -20.15216 -19.86057 -18.67575 -17.89364 -17.70039 -16.94106 -16.69360 -16.46021 -16.36940 -16.08978 -15.81853 -15.71111 -15.44977 -15.25725 -15.03805 -14.98711 -14.63683 -14.29593 -13.99897 -13.95690 -13.51781 -13.45298 -13.39239 -13.19332 -13.01003 -12.92290 -12.86194 -12.61026 -12.46712 -12.40720 -12.36858 -12.30589 -12.14091 -12.09895 -11.80452 -11.65836 -11.48753 -11.37046 -10.98457 -10.31093 -10.17978 -10.03090 -9.95159 -9.12063 -8.46621 -5.94504 1.35294 1.40356 1.54382 1.59843 1.97103 2.07336 2.28424 2.80205 2.96674 3.20378 3.39452 3.58191 3.76708 3.81602 3.84232 3.91994 3.96185 4.21923 4.27649 4.28799 4.34330 4.40321 4.50188 4.50376 4.52691 4.55949 4.59216 4.63977 4.77459 4.79140 4.81485 4.84028 4.86429 4.98033 5.01342 5.03884 5.12922 5.13478 5.20656 5.30207 5.34079 5.34402 5.41442 5.62675 5.92020 6.08941 6.11077 6.31759 6.62218 6.63441 7.14542 7.30924 7.58248 8.15278 8.71118 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.002701 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.562583 B =10363.155770 C =11356.194529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.077 3.923 4 H 0.122 0.878 5 O -0.391 6.391 6 C 0.021 3.979 7 C 0.500 3.500 8 O -0.562 6.562 9 N -0.704 5.704 10 C 0.180 3.820 11 C -0.154 4.154 12 C -0.115 4.115 13 C 0.071 3.929 14 N -0.531 5.531 15 C 0.059 3.941 16 C 0.439 3.561 17 O -0.616 6.616 18 N -0.575 5.575 19 C -0.330 4.330 20 H 0.075 0.925 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.989 3.011 24 H -0.276 1.276 25 H -0.269 1.269 26 H -0.271 1.271 27 C 0.051 3.949 28 C -0.107 4.107 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.091 0.909 37 H 0.412 0.588 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.025 0.975 45 H 0.116 0.884 46 H 0.065 0.935 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.096 0.904 50 H 0.049 0.951 51 H 0.083 0.917 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.079 20.728 9.605 27.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C 0.016 3.984 4 H 0.140 0.860 5 O -0.309 6.309 6 C -0.075 4.075 7 C 0.286 3.714 8 O -0.439 6.439 9 N -0.359 5.359 10 C 0.095 3.905 11 C -0.212 4.212 12 C -0.154 4.154 13 C -0.057 4.057 14 N -0.256 5.256 15 C -0.072 4.072 16 C 0.227 3.773 17 O -0.502 6.502 18 N -0.213 5.213 19 C -0.460 4.460 20 H 0.093 0.907 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.813 3.187 24 H -0.201 1.201 25 H -0.194 1.194 26 H -0.196 1.196 27 C -0.076 4.076 28 C -0.145 4.145 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.250 0.750 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.134 0.866 46 H 0.082 0.918 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.114 0.886 50 H 0.067 0.933 51 H 0.101 0.899 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.537 21.216 8.351 26.516 hybrid contribution -0.688 -1.275 -0.456 1.519 sum -14.224 19.941 7.895 25.735 Atomic orbital electron populations 1.21748 0.93060 1.02872 1.02694 1.21875 0.98513 0.93670 1.02948 1.22178 0.90153 0.96308 0.89786 0.86047 1.88017 1.59940 1.53412 1.29492 1.23143 0.90853 0.89939 1.03527 1.21291 0.91273 0.76769 0.82025 1.90659 1.65614 1.47191 1.40475 1.46006 1.07194 1.64435 1.18290 1.20341 0.79233 0.95232 0.95722 1.22104 1.01584 0.94949 1.02599 1.21860 1.00446 0.93515 0.99550 1.21903 0.96358 0.95932 0.91548 1.61462 1.60404 1.00743 1.03009 1.21715 0.97115 0.88655 0.99680 1.20914 0.86675 0.82607 0.87149 1.90479 1.42007 1.70810 1.46866 1.41933 1.37941 1.05516 1.35943 1.19643 1.19845 0.89748 1.16730 0.90718 1.25979 0.98446 0.97247 0.99516 1.69664 1.36410 1.10935 1.39124 0.84922 0.78016 0.77817 0.77897 1.20112 1.19412 1.19611 1.22292 0.97114 0.93655 0.94549 1.21883 1.03341 0.94532 0.94770 0.91845 0.90385 0.92752 0.89022 0.93464 0.91715 0.92925 0.89095 0.75003 0.90572 0.91360 0.93188 0.92352 0.92008 0.93390 0.95653 0.86601 0.91753 0.77002 0.91328 0.88555 0.93277 0.89886 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.31 71.98 0.67 -1.07 16 2 C -0.13 -2.15 5.61 30.59 0.17 -1.97 16 3 C 0.08 1.35 2.65 29.85 0.08 1.43 16 4 H 0.12 1.19 7.59 -2.39 -0.02 1.17 16 5 O -0.39 -8.76 9.49 -129.99 -1.23 -9.99 16 6 C 0.02 0.28 10.48 113.37 1.19 1.47 16 7 C 0.50 11.87 6.60 87.66 0.58 12.45 16 8 O -0.56 -19.04 12.72 15.95 0.20 -18.84 16 9 N -0.70 -12.70 4.06 -422.56 -1.71 -14.42 16 10 C 0.18 3.89 0.66 3.69 0.00 3.90 16 11 C -0.15 -3.23 8.41 71.98 0.61 -2.63 16 12 C -0.11 -3.64 4.73 30.69 0.15 -3.50 16 13 C 0.07 2.47 4.96 86.37 0.43 2.90 16 14 N -0.53 -16.63 4.40 -900.68 -3.96 -20.59 16 15 C 0.06 2.02 5.45 85.56 0.47 2.48 16 16 C 0.44 21.25 7.46 87.66 0.65 21.90 16 17 O -0.62 -35.05 13.90 -3.05 -0.04 -35.09 16 18 N -0.58 -29.92 5.29 -306.98 -1.62 -31.55 16 19 C -0.33 -19.12 9.68 84.04 0.81 -18.30 16 20 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.99 13.05 21.66 0.28 -49.71 16 23 Si 0.99 43.87 29.55 68.60 2.03 45.90 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 27 C 0.05 0.99 5.30 86.33 0.46 1.44 16 28 C -0.11 -1.78 4.93 30.65 0.15 -1.63 16 29 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.73 7.04 -2.39 -0.02 0.71 16 32 H 0.09 1.16 7.76 -2.38 -0.02 1.15 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.57 7.06 -2.39 -0.02 0.55 16 35 H 0.05 0.56 8.09 -2.39 -0.02 0.54 16 36 H 0.09 1.11 8.14 -2.38 -0.02 1.10 16 37 H 0.41 4.54 7.18 -92.70 -0.67 3.87 16 38 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.05 1.35 6.17 -2.39 -0.01 1.34 16 41 H 0.06 2.15 6.13 -2.38 -0.01 2.14 16 42 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.05 2.20 5.78 -2.39 -0.01 2.19 16 44 H 0.03 0.83 7.69 -2.38 -0.02 0.81 16 45 H 0.12 3.32 7.99 -2.39 -0.02 3.30 16 46 H 0.06 1.96 8.12 -2.39 -0.02 1.94 16 47 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 48 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 49 H 0.10 1.57 8.01 -2.39 -0.02 1.55 16 50 H 0.05 0.75 7.02 -2.39 -0.02 0.74 16 51 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 52 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -79.98 403.75 0.35 -79.63 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: -0.47 Total: 35.97 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 6.88 Total: 18.68 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -7.02 Total: -116.26 kcal Atomic # 8 Polarization: -62.85 SS G_CDS: -1.07 Total: -63.92 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -79.98 0.35 -79.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671402790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.762 kcal (2) G-P(sol) polarization free energy of solvation -79.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds