Wall clock time and date at job start Wed Apr 1 2020 00:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.09000 * 109.47314 * 54.99967 * 3 2 1 5 5 C 1.52997 * 109.46646 * 174.99857 * 3 2 1 6 6 O 1.42899 * 109.46855 * 294.99621 * 3 2 1 7 7 C 1.42906 * 113.99408 * 150.00530 * 6 3 2 8 8 C 1.50700 * 109.46627 * 180.02562 * 7 6 3 9 9 O 1.21277 * 120.00250 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99833 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99984 * 179.97438 * 10 8 7 12 12 C 1.53004 * 110.27484 * 300.69761 * 11 10 8 13 13 C 1.54594 * 110.31083 * 62.78929 * 11 10 8 14 14 C 1.55192 * 102.80444 * 96.97796 * 13 11 10 15 15 N 1.48543 * 103.23522 * 37.43623 * 14 13 11 16 16 C 1.46899 * 111.00089 * 200.25236 * 15 14 13 17 17 C 1.50701 * 109.47467 * 287.40071 * 16 15 14 18 18 O 1.21288 * 119.99839 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00026 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99894 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00084 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99773 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00288 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99822 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47152 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47227 * 119.99968 * 24 22 20 27 27 H 1.48506 * 109.47196 * 239.99865 * 24 22 20 28 28 C 1.47896 * 105.81892 * 320.77184 * 15 14 13 29 29 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 30 30 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 32 32 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 33 33 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 34 34 H 1.09004 * 109.47394 * 299.99282 * 5 3 2 35 35 H 1.08990 * 109.47621 * 60.00181 * 5 3 2 36 36 H 1.09002 * 109.46731 * 179.97438 * 5 3 2 37 37 H 1.08994 * 109.46925 * 299.99369 * 7 6 3 38 38 H 1.09001 * 109.47428 * 59.99877 * 7 6 3 39 39 H 0.97001 * 120.00413 * 359.97438 * 10 8 7 40 40 H 1.09003 * 109.46746 * 59.30126 * 12 11 10 41 41 H 1.09003 * 109.46794 * 179.29938 * 12 11 10 42 42 H 1.08994 * 109.47189 * 299.30088 * 12 11 10 43 43 H 1.09002 * 110.72849 * 215.31802 * 13 11 10 44 44 H 1.08997 * 110.72396 * 338.60146 * 13 11 10 45 45 H 1.08994 * 110.68590 * 278.98770 * 14 13 11 46 46 H 1.09008 * 110.78897 * 155.92627 * 14 13 11 47 47 H 1.09009 * 109.46928 * 47.39555 * 16 15 14 48 48 H 1.09000 * 109.47026 * 167.39334 * 16 15 14 49 49 H 0.96997 * 120.00402 * 359.97438 * 19 17 16 50 50 H 0.97004 * 119.99798 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.91634 * 265.97818 * 28 15 14 52 52 H 1.08997 * 110.08568 * 144.77741 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5647 1.4444 0.1258 6 8 1.6618 2.0814 -1.2211 7 6 1.4558 3.4903 -1.1003 8 6 1.0625 4.0570 -2.4402 9 8 0.9684 3.3265 -3.4036 10 7 0.8153 5.3758 -2.5677 11 6 0.4335 5.9268 -3.8703 12 6 1.5294 5.6548 -4.9029 13 6 -0.9080 5.3175 -4.3384 14 6 -1.9422 6.3920 -3.9090 15 7 -1.2304 7.6705 -4.1644 16 6 -1.8297 8.7694 -3.3956 17 6 -3.1603 9.1379 -3.9996 18 8 -3.5689 8.5438 -4.9749 19 7 -3.8957 10.1282 -3.4568 20 6 -5.1059 10.4637 -4.0066 21 1 -5.4698 9.9347 -4.8750 22 6 -5.8644 11.4844 -3.4465 23 7 -5.4219 12.1278 -2.3895 24 14 -7.5131 11.9421 -4.1961 25 1 -7.7806 11.0743 -5.3710 26 1 -8.5854 11.7534 -3.1863 27 1 -7.4835 13.3629 -4.6272 28 6 0.1719 7.4400 -3.7547 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8531 0.9572 1.0572 35 1 3.9994 0.9055 -0.7159 36 1 3.9280 2.4721 0.1253 37 1 0.6616 3.6808 -0.3785 38 1 2.3767 3.9645 -0.7609 39 1 0.8901 5.9601 -1.7971 40 1 1.6861 4.5797 -4.9916 41 1 1.2266 6.0589 -5.8689 42 1 2.4559 6.1319 -4.5836 43 1 -0.9149 5.1851 -5.4203 44 1 -1.0996 4.3716 -3.8318 45 1 -2.1850 6.2915 -2.8512 46 1 -2.8442 6.3257 -4.5174 47 1 -1.9748 8.4533 -2.3625 48 1 -1.1670 9.6344 -3.4212 49 1 -3.5688 10.6036 -2.6770 50 1 -5.9513 12.8406 -1.9988 51 1 0.3156 7.7639 -2.7239 52 1 0.8485 7.9852 -4.4127 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671630150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:41 Heat of formation + Delta-G solvation = -115.215388 kcal Electronic energy + Delta-G solvation = -30265.219873 eV Core-core repulsion = 26071.835590 eV Total energy + Delta-G solvation = -4193.384284 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.63236 -39.17695 -38.37785 -37.45641 -34.64699 -34.13397 -33.79332 -31.85989 -31.18124 -30.28359 -29.66586 -27.90298 -27.52588 -25.30704 -24.06823 -23.83707 -21.84877 -21.42977 -20.88173 -19.68111 -19.14905 -17.89164 -17.50616 -17.37632 -16.34515 -16.24300 -15.93736 -15.17929 -15.07426 -14.65004 -14.64003 -14.42437 -14.27044 -14.03097 -13.77595 -13.60949 -13.45926 -13.33242 -13.13327 -13.04888 -12.57568 -12.46236 -12.29074 -12.09753 -12.00443 -11.77676 -11.73619 -11.49143 -11.37164 -11.26105 -11.22255 -11.02837 -10.95135 -10.86590 -10.73457 -10.33881 -10.21922 -10.00907 -9.73566 -9.49981 -9.20713 -8.49687 -8.01194 -7.93708 -6.41373 -3.81844 2.43004 2.51966 3.16624 3.27165 3.34632 3.60091 3.91330 4.04649 4.24565 4.31499 4.38262 4.54475 4.59681 4.69364 4.72089 4.73660 4.85270 4.88292 4.95477 5.13496 5.14884 5.22904 5.24044 5.26632 5.31652 5.44451 5.49653 5.55300 5.63331 5.65211 5.70566 5.73163 5.77671 5.79719 5.81618 5.92582 6.00919 6.01210 6.20568 6.23868 6.28471 6.43145 6.46103 6.74346 7.12625 7.16899 7.32341 7.56068 8.05667 8.07303 8.62763 9.19289 9.55333 10.07528 10.76585 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017866 B = 0.001922 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.864341 B =14564.568730 C =15233.712915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.082 3.918 4 H 0.061 0.939 5 C -0.176 4.176 6 O -0.353 6.353 7 C 0.043 3.957 8 C 0.515 3.485 9 O -0.510 6.510 10 N -0.721 5.721 11 C 0.166 3.834 12 C -0.155 4.155 13 C -0.120 4.120 14 C 0.040 3.960 15 N -0.487 5.487 16 C 0.037 3.963 17 C 0.446 3.554 18 O -0.575 6.575 19 N -0.567 5.567 20 C -0.296 4.296 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.036 3.964 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.397 0.603 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.036 0.964 46 H 0.100 0.900 47 H 0.049 0.951 48 H 0.088 0.912 49 H 0.391 0.609 50 H 0.270 0.730 51 H 0.047 0.953 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.666 -17.079 9.546 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C 0.025 3.975 4 H 0.080 0.920 5 C -0.234 4.234 6 O -0.271 6.271 7 C -0.037 4.037 8 C 0.300 3.700 9 O -0.384 6.384 10 N -0.376 5.376 11 C 0.081 3.919 12 C -0.213 4.213 13 C -0.159 4.159 14 C -0.087 4.087 15 N -0.211 5.211 16 C -0.095 4.095 17 C 0.231 3.769 18 O -0.458 6.458 19 N -0.204 5.204 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.093 4.093 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.232 0.768 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.055 0.945 46 H 0.118 0.882 47 H 0.067 0.933 48 H 0.107 0.893 49 H 0.224 0.776 50 H 0.080 0.920 51 H 0.065 0.935 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 18.167 -17.816 7.549 26.541 hybrid contribution -0.453 1.081 1.934 2.261 sum 17.714 -16.735 9.483 26.149 Atomic orbital electron populations 1.21748 0.95184 1.01816 1.02341 1.21622 0.96817 0.94521 1.02761 1.22247 0.94303 0.94303 0.86687 0.92049 1.22308 0.96038 1.02422 1.02619 1.88066 1.89378 1.17725 1.31954 1.22249 1.01358 0.84395 0.95742 1.20167 0.77461 0.82217 0.90189 1.90713 1.49539 1.58475 1.39673 1.46186 1.71212 1.08136 1.12048 1.21183 0.95538 0.92624 0.82570 1.22165 0.96979 1.03877 0.98263 1.22905 0.92462 0.98114 1.02446 1.23365 0.98461 0.87690 0.99190 1.64522 1.00002 1.04157 1.52459 1.22081 0.96936 0.95392 0.95101 1.19681 0.86370 0.83926 0.86944 1.90517 1.72413 1.54821 1.28051 1.41860 1.18429 1.31296 1.28798 1.19749 0.94387 1.16027 1.12433 0.87865 1.25254 1.00043 0.96477 0.96280 1.69620 1.39172 1.23898 1.21807 0.85806 0.81246 0.78342 0.78995 1.19212 1.20817 1.20769 1.23215 0.92782 0.93567 0.99739 0.91682 0.92637 0.93076 0.90883 0.90708 0.91512 0.91545 0.92496 0.90430 0.90562 0.76800 0.90395 0.90996 0.92841 0.89722 0.90438 0.94549 0.88224 0.93314 0.89340 0.77580 0.91988 0.93499 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.81 37.16 0.36 -0.77 16 2 C -0.12 -0.81 5.64 -26.73 -0.15 -0.96 16 3 C 0.08 0.59 2.72 -26.73 -0.07 0.51 16 4 H 0.06 0.36 7.79 -51.93 -0.40 -0.05 16 5 C -0.18 -1.04 9.53 37.16 0.35 -0.69 16 6 O -0.35 -3.60 9.06 -55.14 -0.50 -4.10 16 7 C 0.04 0.35 6.23 36.01 0.22 0.57 16 8 C 0.51 5.70 7.10 -10.99 -0.08 5.62 16 9 O -0.51 -7.74 13.37 -14.35 -0.19 -7.93 16 10 N -0.72 -6.84 5.15 -46.35 -0.24 -7.08 16 11 C 0.17 1.94 0.94 -130.46 -0.12 1.81 16 12 C -0.15 -1.76 8.14 37.16 0.30 -1.46 16 13 C -0.12 -1.69 5.85 -24.73 -0.14 -1.83 16 14 C 0.04 0.65 5.94 -1.75 -0.01 0.64 16 15 N -0.49 -7.96 4.91 -231.71 -1.14 -9.10 16 16 C 0.04 0.64 5.19 -4.98 -0.03 0.61 16 17 C 0.45 10.47 7.61 -10.99 -0.08 10.39 16 18 O -0.57 -15.57 14.64 5.55 0.08 -15.49 16 19 N -0.57 -14.28 5.29 -10.97 -0.06 -14.34 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 24 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.04 0.43 6.12 -2.76 -0.02 0.41 16 29 H 0.06 0.61 7.82 -51.93 -0.41 0.21 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.31 7.87 -51.93 -0.41 -0.09 16 37 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 38 H 0.08 0.44 7.87 -51.93 -0.41 0.03 16 39 H 0.40 2.65 8.09 -40.82 -0.33 2.32 16 40 H 0.08 1.02 6.17 -51.93 -0.32 0.70 16 41 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 1.24 7.86 -51.93 -0.41 0.83 16 44 H 0.08 1.13 6.68 -51.93 -0.35 0.79 16 45 H 0.04 0.56 7.81 -51.93 -0.41 0.16 16 46 H 0.10 1.92 7.10 -51.92 -0.37 1.55 16 47 H 0.05 0.76 7.83 -51.92 -0.41 0.36 16 48 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 49 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 50 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 51 H 0.05 0.47 7.09 -51.93 -0.37 0.10 16 52 H 0.09 1.04 7.68 -51.93 -0.40 0.65 16 LS Contribution 414.66 15.07 6.25 6.25 Total: -1.00 -34.02 414.66 -8.83 -42.86 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -9.04 Total: 9.72 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 0.30 Total: 6.91 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.71 Total: -54.28 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.61 Total: -27.52 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.02 -8.83 -42.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671630150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.360 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds