Wall clock time and date at job start Wed Apr 1 2020 00:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.09000 * 109.47314 * 54.99967 * 3 2 1 5 5 C 1.52997 * 109.46646 * 174.99857 * 3 2 1 6 6 O 1.42899 * 109.46855 * 294.99621 * 3 2 1 7 7 C 1.42906 * 113.99408 * 150.00530 * 6 3 2 8 8 C 1.50700 * 109.46627 * 180.02562 * 7 6 3 9 9 O 1.21277 * 120.00250 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99833 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99984 * 179.97438 * 10 8 7 12 12 C 1.53004 * 110.27484 * 300.69761 * 11 10 8 13 13 C 1.54594 * 110.31083 * 62.78929 * 11 10 8 14 14 C 1.55192 * 102.80444 * 96.97796 * 13 11 10 15 15 N 1.48543 * 103.23522 * 37.43623 * 14 13 11 16 16 C 1.46899 * 111.00089 * 200.25236 * 15 14 13 17 17 C 1.50701 * 109.47467 * 287.40071 * 16 15 14 18 18 O 1.21288 * 119.99839 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00026 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99894 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00084 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99773 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00288 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99822 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47152 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47227 * 119.99968 * 24 22 20 27 27 H 1.48506 * 109.47196 * 239.99865 * 24 22 20 28 28 C 1.47896 * 105.81892 * 320.77184 * 15 14 13 29 29 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 30 30 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 32 32 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 33 33 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 34 34 H 1.09004 * 109.47394 * 299.99282 * 5 3 2 35 35 H 1.08990 * 109.47621 * 60.00181 * 5 3 2 36 36 H 1.09002 * 109.46731 * 179.97438 * 5 3 2 37 37 H 1.08994 * 109.46925 * 299.99369 * 7 6 3 38 38 H 1.09001 * 109.47428 * 59.99877 * 7 6 3 39 39 H 0.97001 * 120.00413 * 359.97438 * 10 8 7 40 40 H 1.09003 * 109.46746 * 59.30126 * 12 11 10 41 41 H 1.09003 * 109.46794 * 179.29938 * 12 11 10 42 42 H 1.08994 * 109.47189 * 299.30088 * 12 11 10 43 43 H 1.09002 * 110.72849 * 215.31802 * 13 11 10 44 44 H 1.08997 * 110.72396 * 338.60146 * 13 11 10 45 45 H 1.08994 * 110.68590 * 278.98770 * 14 13 11 46 46 H 1.09008 * 110.78897 * 155.92627 * 14 13 11 47 47 H 1.09009 * 109.46928 * 47.39555 * 16 15 14 48 48 H 1.09000 * 109.47026 * 167.39334 * 16 15 14 49 49 H 0.96997 * 120.00402 * 359.97438 * 19 17 16 50 50 H 0.97004 * 119.99798 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.91634 * 265.97818 * 28 15 14 52 52 H 1.08997 * 110.08568 * 144.77741 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5647 1.4444 0.1258 6 8 1.6618 2.0814 -1.2211 7 6 1.4558 3.4903 -1.1003 8 6 1.0625 4.0570 -2.4402 9 8 0.9684 3.3265 -3.4036 10 7 0.8153 5.3758 -2.5677 11 6 0.4335 5.9268 -3.8703 12 6 1.5294 5.6548 -4.9029 13 6 -0.9080 5.3175 -4.3384 14 6 -1.9422 6.3920 -3.9090 15 7 -1.2304 7.6705 -4.1644 16 6 -1.8297 8.7694 -3.3956 17 6 -3.1603 9.1379 -3.9996 18 8 -3.5689 8.5438 -4.9749 19 7 -3.8957 10.1282 -3.4568 20 6 -5.1059 10.4637 -4.0066 21 1 -5.4698 9.9347 -4.8750 22 6 -5.8644 11.4844 -3.4465 23 7 -5.4219 12.1278 -2.3895 24 14 -7.5131 11.9421 -4.1961 25 1 -7.7806 11.0743 -5.3710 26 1 -8.5854 11.7534 -3.1863 27 1 -7.4835 13.3629 -4.6272 28 6 0.1719 7.4400 -3.7547 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8531 0.9572 1.0572 35 1 3.9994 0.9055 -0.7159 36 1 3.9280 2.4721 0.1253 37 1 0.6616 3.6808 -0.3785 38 1 2.3767 3.9645 -0.7609 39 1 0.8901 5.9601 -1.7971 40 1 1.6861 4.5797 -4.9916 41 1 1.2266 6.0589 -5.8689 42 1 2.4559 6.1319 -4.5836 43 1 -0.9149 5.1851 -5.4203 44 1 -1.0996 4.3716 -3.8318 45 1 -2.1850 6.2915 -2.8512 46 1 -2.8442 6.3257 -4.5174 47 1 -1.9748 8.4533 -2.3625 48 1 -1.1670 9.6344 -3.4212 49 1 -3.5688 10.6036 -2.6770 50 1 -5.9513 12.8406 -1.9988 51 1 0.3156 7.7639 -2.7239 52 1 0.8485 7.9852 -4.4127 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671630150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:41 Heat of formation + Delta-G solvation = -140.668179 kcal Electronic energy + Delta-G solvation = -30266.323589 eV Core-core repulsion = 26071.835590 eV Total energy + Delta-G solvation = -4194.488000 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59700 -40.33889 -39.53262 -38.68224 -36.06910 -35.46955 -34.72614 -33.31245 -32.78911 -30.89750 -30.71527 -28.94263 -28.53342 -26.86844 -25.39025 -24.54520 -22.97167 -21.97184 -21.89507 -21.05191 -20.51115 -19.86600 -18.40083 -18.01005 -17.78422 -17.10005 -17.01093 -16.58628 -16.19424 -16.12920 -15.85288 -15.68688 -15.39547 -15.01431 -14.74894 -14.70362 -14.39481 -14.31040 -14.11654 -14.05226 -13.68208 -13.60411 -13.42358 -13.20060 -12.95941 -12.92677 -12.90891 -12.57351 -12.42832 -12.38093 -12.37221 -12.24580 -12.11831 -11.99075 -11.92421 -11.86881 -11.48136 -11.46303 -10.65336 -10.56043 -10.30674 -10.10850 -9.98819 -9.32742 -8.45977 -5.93874 1.36370 1.41664 1.55500 1.61088 1.78878 2.08004 2.29146 2.79415 3.04059 3.20826 3.30984 3.48418 3.69374 3.74482 3.92165 3.93462 4.06936 4.19373 4.21037 4.22890 4.28893 4.29841 4.34339 4.43176 4.44121 4.51790 4.58779 4.67702 4.72624 4.76398 4.80510 4.83556 4.86350 4.93991 5.05540 5.08156 5.09993 5.10234 5.20960 5.30314 5.31191 5.42201 5.42798 5.51279 5.83153 5.94507 6.10051 6.19636 6.59490 6.62861 7.15143 7.27798 7.58854 8.15727 8.71636 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017866 B = 0.001922 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.864341 B =14564.568730 C =15233.712915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.078 3.922 4 H 0.080 0.920 5 C -0.173 4.173 6 O -0.387 6.387 7 C 0.045 3.955 8 C 0.510 3.490 9 O -0.559 6.559 10 N -0.707 5.707 11 C 0.174 3.826 12 C -0.149 4.149 13 C -0.113 4.113 14 C 0.046 3.954 15 N -0.512 5.512 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.618 6.618 19 N -0.575 5.575 20 C -0.330 4.330 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.276 1.276 26 H -0.271 1.271 27 H -0.270 1.270 28 C 0.041 3.959 29 H 0.037 0.963 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.416 0.584 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.045 0.955 46 H 0.057 0.943 47 H 0.075 0.925 48 H 0.116 0.884 49 H 0.397 0.603 50 H 0.277 0.723 51 H 0.080 0.920 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.303 -16.215 12.070 28.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C 0.020 3.980 4 H 0.098 0.902 5 C -0.231 4.231 6 O -0.306 6.306 7 C -0.035 4.035 8 C 0.297 3.703 9 O -0.436 6.436 10 N -0.363 5.363 11 C 0.087 3.913 12 C -0.207 4.207 13 C -0.153 4.153 14 C -0.082 4.082 15 N -0.237 5.237 16 C -0.081 4.081 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.213 5.213 20 C -0.460 4.460 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.201 1.201 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.087 4.087 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.254 0.746 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.134 0.866 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.098 0.902 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 19.836 -16.921 10.131 27.972 hybrid contribution -0.949 0.756 1.133 1.660 sum 18.887 -16.165 11.264 27.293 Atomic orbital electron populations 1.21725 0.95839 1.01880 1.01486 1.21667 0.96219 0.94866 1.03057 1.22431 0.95139 0.94165 0.86219 0.90211 1.22288 0.95059 1.02824 1.02888 1.88037 1.89792 1.18910 1.33888 1.22356 1.03466 0.83719 0.93929 1.20809 0.76387 0.82179 0.90898 1.90702 1.51699 1.59672 1.41539 1.46002 1.70321 1.08100 1.11853 1.20980 0.94105 0.92442 0.83736 1.22090 0.97761 1.02691 0.98140 1.22774 0.93751 0.97213 1.01516 1.23170 0.97499 0.88767 0.98757 1.64408 1.02139 1.03663 1.53445 1.21954 0.93626 0.96883 0.95661 1.20836 0.87983 0.82332 0.86063 1.90496 1.73927 1.55876 1.30032 1.41914 1.18147 1.32104 1.29146 1.19658 0.96325 1.17266 1.12762 0.90607 1.25988 1.02935 0.95818 0.96521 1.69668 1.40275 1.23982 1.22164 0.84907 0.77397 0.78161 0.78092 1.20062 1.19601 1.19567 1.23255 0.89953 0.93519 1.01979 0.94344 0.92197 0.91983 0.92477 0.88467 0.89732 0.93040 0.91872 0.88184 0.87558 0.74643 0.92404 0.91424 0.90709 0.91187 0.91325 0.93680 0.92487 0.90714 0.86586 0.76948 0.91346 0.90226 0.87754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.81 71.98 0.71 -1.46 16 2 C -0.12 -1.51 5.64 30.60 0.17 -1.34 16 3 C 0.08 0.96 2.72 30.60 0.08 1.04 16 4 H 0.08 0.68 7.79 -2.39 -0.02 0.66 16 5 C -0.17 -1.68 9.53 71.98 0.69 -1.00 16 6 O -0.39 -7.51 9.06 -129.94 -1.18 -8.68 16 7 C 0.04 0.61 6.23 71.24 0.44 1.06 16 8 C 0.51 10.59 7.10 87.66 0.62 11.21 16 9 O -0.56 -17.16 13.37 16.02 0.21 -16.94 16 10 N -0.71 -11.61 5.15 -418.95 -2.16 -13.77 16 11 C 0.17 3.76 0.94 4.48 0.00 3.76 16 12 C -0.15 -3.21 8.14 71.98 0.59 -2.62 16 13 C -0.11 -3.24 5.85 31.89 0.19 -3.05 16 14 C 0.05 1.50 5.94 86.74 0.52 2.01 16 15 N -0.51 -16.06 4.91 -887.00 -4.35 -20.41 16 16 C 0.05 1.64 5.19 85.56 0.44 2.09 16 17 C 0.44 20.87 7.61 87.66 0.67 21.53 16 18 O -0.62 -34.68 14.64 -3.05 -0.04 -34.72 16 19 N -0.58 -29.27 5.29 -307.00 -1.62 -30.89 16 20 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 21 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 24 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 C 0.04 0.85 6.12 86.45 0.53 1.38 16 29 H 0.04 0.74 7.82 -2.39 -0.02 0.73 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.53 7.87 -2.39 -0.02 0.51 16 37 H 0.10 0.92 8.08 -2.39 -0.02 0.90 16 38 H 0.11 0.81 7.87 -2.39 -0.02 0.79 16 39 H 0.42 3.85 8.09 -92.71 -0.75 3.10 16 40 H 0.06 1.52 6.17 -2.39 -0.01 1.51 16 41 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 2.17 7.86 -2.39 -0.02 2.15 16 44 H 0.07 2.08 6.68 -2.39 -0.02 2.06 16 45 H 0.04 1.37 7.81 -2.39 -0.02 1.35 16 46 H 0.06 2.34 7.10 -2.38 -0.02 2.32 16 47 H 0.08 2.10 7.83 -2.38 -0.02 2.08 16 48 H 0.12 3.21 8.08 -2.39 -0.02 3.19 16 49 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 50 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 51 H 0.08 1.19 7.09 -2.39 -0.02 1.17 16 52 H 0.10 1.99 7.68 -2.39 -0.02 1.97 16 Total: -1.00 -77.69 414.66 -0.46 -78.15 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: -0.56 Total: 34.61 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 6.93 Total: 16.38 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -7.85 Total: -113.98 kcal Atomic # 8 Polarization: -59.34 SS G_CDS: -1.01 Total: -60.34 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -77.69 -0.46 -78.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671630150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.516 kcal (2) G-P(sol) polarization free energy of solvation -77.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds