Wall clock time and date at job start Wed Apr 1 2020 00:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47460 * 2 1 4 4 H 1.08997 * 109.46832 * 54.99587 * 3 2 1 5 5 C 1.53005 * 109.46726 * 294.99824 * 3 2 1 6 6 C 1.52995 * 109.47205 * 175.00392 * 3 2 1 7 7 H 1.08997 * 109.47417 * 64.64941 * 6 3 2 8 8 N 1.46506 * 109.47016 * 304.65159 * 6 3 2 9 9 C 1.34778 * 120.00138 * 300.00327 * 8 6 3 10 10 C 1.50691 * 120.00136 * 179.97438 * 9 8 6 11 11 O 1.21282 * 119.99571 * 359.97438 * 9 8 6 12 12 C 1.50699 * 109.47113 * 184.65317 * 6 3 2 13 13 O 1.21285 * 119.99752 * 97.19245 * 12 6 3 14 14 N 1.34772 * 119.99967 * 276.91592 * 12 6 3 15 15 C 1.46499 * 120.00015 * 185.16965 * 14 12 6 16 16 C 1.53002 * 109.47009 * 82.52325 * 15 14 12 17 17 H 1.09001 * 109.68203 * 300.66418 * 16 15 14 18 18 C 1.53289 * 109.68589 * 180.13816 * 16 15 14 19 19 O 1.42968 * 109.22696 * 187.97613 * 18 16 15 20 20 C 1.42955 * 114.16290 * 62.58077 * 19 18 16 21 21 C 1.53296 * 109.22641 * 297.42167 * 20 19 18 22 22 N 1.47150 * 108.38597 * 52.30174 * 21 20 19 23 23 C 1.36935 * 120.97969 * 129.48541 * 22 21 20 24 24 H 1.08002 * 120.00074 * 213.96731 * 23 22 21 25 25 C 1.38803 * 120.00038 * 33.97491 * 23 22 21 26 26 N 1.31619 * 120.00281 * 7.66385 * 25 23 22 27 27 Si 1.86806 * 119.99943 * 187.66640 * 25 23 22 28 28 H 1.48504 * 109.47197 * 94.99774 * 27 25 23 29 29 H 1.48506 * 109.47196 * 214.99504 * 27 25 23 30 30 H 1.48500 * 109.47126 * 334.99373 * 27 25 23 31 31 H 1.09010 * 109.46859 * 300.00419 * 1 2 3 32 32 H 1.08994 * 109.47225 * 59.99789 * 1 2 3 33 33 H 1.08994 * 109.47457 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47172 * 239.99716 * 2 1 3 35 35 H 1.09001 * 109.46995 * 119.99959 * 2 1 3 36 36 H 1.08997 * 109.47372 * 295.14467 * 5 3 2 37 37 H 1.08999 * 109.46945 * 55.14483 * 5 3 2 38 38 H 1.08998 * 109.46898 * 175.14052 * 5 3 2 39 39 H 0.97001 * 119.99845 * 120.00044 * 8 6 3 40 40 H 1.09003 * 109.47033 * 60.00257 * 10 9 8 41 41 H 1.09006 * 109.47131 * 179.97438 * 10 9 8 42 42 H 1.09001 * 109.47605 * 300.00247 * 10 9 8 43 43 H 0.96995 * 119.99998 * 5.17741 * 14 12 6 44 44 H 1.09001 * 109.47520 * 202.52445 * 15 14 12 45 45 H 1.08994 * 109.47360 * 322.52867 * 15 14 12 46 46 H 1.08998 * 109.51554 * 307.90183 * 18 16 15 47 47 H 1.09008 * 109.50836 * 68.00027 * 18 16 15 48 48 H 1.09000 * 109.51656 * 57.34856 * 20 19 18 49 49 H 1.09005 * 109.51269 * 177.50018 * 20 19 18 50 50 H 1.08997 * 109.68653 * 172.02858 * 21 20 19 51 51 H 1.09001 * 109.68110 * 292.58062 * 21 20 19 52 52 H 0.97000 * 120.00060 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4442 0.1256 7 1 4.0027 0.9779 -0.7569 8 7 3.9573 0.6928 1.3205 9 6 3.5299 1.0884 2.5359 10 6 3.9331 0.3151 3.7649 11 8 2.8209 2.0668 2.6406 12 6 4.0578 2.8637 0.2406 13 8 4.2945 3.3369 1.3319 14 7 4.2408 3.6055 -0.8697 15 6 4.8264 4.9444 -0.7677 16 6 6.3509 4.8309 -0.7045 17 1 6.6389 4.2330 0.1602 18 6 6.9688 6.2294 -0.5942 19 8 8.3890 6.1281 -0.7229 20 6 8.8276 5.6235 -1.9865 21 6 8.3050 4.1939 -2.1681 22 7 6.8521 4.1977 -1.9347 23 6 5.9920 3.6286 -2.8355 24 1 5.0129 4.0567 -2.9919 25 6 6.3785 2.5014 -3.5474 26 7 7.5063 1.8908 -3.2516 27 14 5.2979 1.8512 -4.9255 28 1 5.7687 2.3976 -6.2236 29 1 5.3734 0.3684 -4.9561 30 1 3.8925 2.2705 -4.6924 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.1388 1.6402 -2.1429 37 1 0.5561 2.0492 -1.4389 38 1 1.9227 3.1773 -1.2718 39 1 4.5246 -0.0896 1.2368 40 1 5.0194 0.3160 3.8546 41 1 3.4956 0.7817 4.6475 42 1 3.5762 -0.7115 3.6816 43 1 3.9847 3.2528 -1.7362 44 1 4.5418 5.5329 -1.6399 45 1 4.4608 5.4331 0.1353 46 1 6.5757 6.8647 -1.3879 47 1 6.7201 6.6618 0.3750 48 1 8.4414 6.2566 -2.7853 49 1 9.9172 5.6196 -2.0186 50 1 8.5129 3.8530 -3.1823 51 1 8.7903 3.5317 -1.4511 52 1 7.7765 1.1033 -3.7494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673076257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:13 Heat of formation + Delta-G solvation = -93.911010 kcal Electronic energy + Delta-G solvation = -33265.504212 eV Core-core repulsion = 29073.043755 eV Total energy + Delta-G solvation = -4192.460457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.32965 -38.71756 -37.85805 -36.37009 -35.12304 -33.67236 -33.35913 -31.62553 -30.69316 -30.20033 -29.23774 -27.21943 -26.52472 -25.22986 -23.69252 -23.44136 -21.72081 -20.97265 -20.12400 -19.49363 -19.11606 -17.30264 -16.93098 -16.58384 -15.98281 -15.51766 -15.36160 -15.09618 -14.63789 -14.54365 -14.47485 -14.23416 -13.94509 -13.74815 -13.53187 -13.35362 -13.20598 -12.92655 -12.67067 -12.49369 -12.40896 -12.23530 -11.94278 -11.89175 -11.61631 -11.51128 -11.27681 -11.06672 -10.96329 -10.91276 -10.77837 -10.62432 -10.58304 -10.35189 -10.28020 -10.10119 -9.64459 -9.60584 -9.24763 -9.12117 -8.65633 -8.42750 -8.03670 -6.64467 -5.91370 -3.43311 2.96641 3.19160 3.26102 3.29324 3.30739 3.54994 3.98173 4.28520 4.61355 4.86700 4.93365 4.97438 5.14053 5.22092 5.25052 5.29879 5.40647 5.43873 5.48404 5.55332 5.61076 5.64908 5.75905 5.80696 5.88381 5.92410 5.97690 6.00732 6.03819 6.06128 6.09328 6.13772 6.15735 6.20882 6.25796 6.39915 6.42092 6.49130 6.60618 6.69836 6.90980 7.10863 7.28431 7.52575 7.55446 7.78981 7.94493 8.27013 8.34014 8.62545 9.02669 9.03969 9.65781 10.31037 11.14866 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010549 B = 0.004807 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.533038 B = 5823.960400 C = 7284.661590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.100 4.100 4 H 0.096 0.904 5 C -0.158 4.158 6 C 0.138 3.862 7 H 0.107 0.893 8 N -0.719 5.719 9 C 0.514 3.486 10 C -0.172 4.172 11 O -0.514 6.514 12 C 0.507 3.493 13 O -0.530 6.530 14 N -0.699 5.699 15 C 0.133 3.867 16 C 0.122 3.878 17 H 0.039 0.961 18 C 0.055 3.945 19 O -0.394 6.394 20 C 0.036 3.964 21 C 0.146 3.854 22 N -0.587 5.587 23 C -0.247 4.247 24 H 0.064 0.936 25 C 0.010 3.990 26 N -0.897 5.897 27 Si 0.890 3.110 28 H -0.286 1.286 29 H -0.289 1.289 30 H -0.275 1.275 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.401 0.599 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.406 0.594 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.043 0.957 47 H 0.080 0.920 48 H 0.039 0.961 49 H 0.077 0.923 50 H 0.089 0.911 51 H 0.026 0.974 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.392 -3.799 4.721 10.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.120 4.120 4 H 0.114 0.886 5 C -0.216 4.216 6 C 0.028 3.972 7 H 0.125 0.875 8 N -0.372 5.372 9 C 0.300 3.700 10 C -0.232 4.232 11 O -0.388 6.388 12 C 0.290 3.710 13 O -0.406 6.406 14 N -0.352 5.352 15 C 0.008 3.992 16 C 0.015 3.985 17 H 0.057 0.943 18 C -0.024 4.024 19 O -0.312 6.312 20 C -0.042 4.042 21 C 0.021 3.979 22 N -0.312 5.312 23 C -0.377 4.377 24 H 0.081 0.919 25 C -0.190 4.190 26 N -0.540 5.540 27 Si 0.720 3.280 28 H -0.213 1.213 29 H -0.215 1.215 30 H -0.201 1.201 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.235 0.765 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.244 0.756 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.098 0.902 48 H 0.058 0.942 49 H 0.096 0.904 50 H 0.107 0.893 51 H 0.044 0.956 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.544 -2.849 5.671 10.643 hybrid contribution -0.155 -1.191 -1.620 2.017 sum -8.699 -4.040 4.051 10.412 Atomic orbital electron populations 1.21801 0.95952 1.01153 1.01930 1.21488 0.95758 0.95960 1.01868 1.21463 0.93124 0.97328 1.00083 0.88609 1.22018 1.01792 1.01197 0.96591 1.20934 0.95822 0.91515 0.88882 0.87530 1.45652 1.54021 1.31724 1.05807 1.20529 0.80286 0.84693 0.84453 1.21885 1.03675 1.00948 0.96644 1.90692 1.36496 1.25519 1.86104 1.20548 0.77977 0.87697 0.84735 1.90687 1.50847 1.72307 1.26716 1.46053 1.62377 1.17238 1.09520 1.21155 0.92751 0.84099 1.01223 1.21575 0.92759 0.92948 0.91265 0.94316 1.22911 0.81919 0.97312 1.00256 1.87796 1.21500 1.85697 1.36249 1.23331 0.98224 0.97889 0.84792 1.21351 0.83920 0.90675 1.01967 1.43970 1.02039 1.66821 1.18357 1.18944 0.98124 1.05361 1.15314 0.91887 1.25241 0.97642 0.95996 1.00132 1.69960 1.22641 1.20414 1.40978 0.86479 0.80326 0.78390 0.82840 1.21307 1.21531 1.20060 0.92853 0.92462 0.93097 0.92027 0.92028 0.92188 0.91879 0.91902 0.76473 0.89725 0.89398 0.90048 0.75571 0.90756 0.91198 0.93878 0.90158 0.94236 0.90437 0.89329 0.95598 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.67 37.16 0.36 -1.19 16 2 C -0.11 -1.30 5.28 -26.73 -0.14 -1.44 16 3 C -0.10 -1.39 1.66 -90.62 -0.15 -1.54 16 4 H 0.10 1.59 6.31 -51.93 -0.33 1.26 16 5 C -0.16 -2.05 8.11 37.16 0.30 -1.75 16 6 C 0.14 2.17 2.60 -69.08 -0.18 1.99 16 7 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 8 N -0.72 -10.14 4.20 -54.94 -0.23 -10.37 16 9 C 0.51 7.89 6.57 -10.99 -0.07 7.81 16 10 C -0.17 -1.83 10.32 36.00 0.37 -1.46 16 11 O -0.51 -10.09 12.93 -18.16 -0.23 -10.32 16 12 C 0.51 9.82 6.29 -10.99 -0.07 9.75 16 13 O -0.53 -12.05 13.27 -18.16 -0.24 -12.29 16 14 N -0.70 -13.08 3.29 -60.30 -0.20 -13.28 16 15 C 0.13 2.49 4.78 -4.04 -0.02 2.47 16 16 C 0.12 2.60 3.32 -67.42 -0.22 2.38 16 17 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 18 C 0.06 1.05 6.29 37.31 0.23 1.29 16 19 O -0.39 -8.20 10.74 -35.23 -0.38 -8.58 16 20 C 0.04 0.71 6.98 37.31 0.26 0.97 16 21 C 0.15 3.43 5.35 -3.53 -0.02 3.41 16 22 N -0.59 -13.74 3.02 -164.30 -0.50 -14.24 16 23 C -0.25 -5.87 7.18 -15.06 -0.11 -5.98 16 24 H 0.06 1.42 5.35 -52.49 -0.28 1.14 16 25 C 0.01 0.24 5.11 -17.43 -0.09 0.15 16 26 N -0.90 -23.78 11.18 55.49 0.62 -23.16 16 27 Si 0.89 19.09 29.56 -169.99 -5.02 14.07 16 28 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 30 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 31 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 32 H 0.06 0.56 6.46 -51.93 -0.34 0.23 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.70 7.17 -51.93 -0.37 0.33 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.71 6.35 -51.93 -0.33 0.38 16 38 H 0.06 0.88 6.45 -51.93 -0.33 0.54 16 39 H 0.40 4.51 8.83 -40.82 -0.36 4.15 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.94 8.12 -51.93 -0.42 0.52 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.41 7.42 5.55 -40.82 -0.23 7.20 16 44 H 0.07 1.29 7.52 -51.93 -0.39 0.90 16 45 H 0.07 1.29 7.59 -51.93 -0.39 0.90 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 48 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 50 H 0.09 2.23 6.45 -51.93 -0.34 1.89 16 51 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 52 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 395.34 15.07 5.96 5.96 Total: -1.00 -32.15 395.34 -8.51 -40.66 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -8.74 Total: 14.70 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 0.46 Total: 16.85 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -0.31 Total: -61.05 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.85 Total: -31.19 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.15 -8.51 -40.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673076257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.250 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds