Wall clock time and date at job start Wed Apr 1 2020 00:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47460 * 2 1 4 4 H 1.08997 * 109.46832 * 54.99587 * 3 2 1 5 5 C 1.53005 * 109.46726 * 294.99824 * 3 2 1 6 6 C 1.52995 * 109.47205 * 175.00392 * 3 2 1 7 7 H 1.08997 * 109.47417 * 64.64941 * 6 3 2 8 8 N 1.46506 * 109.47016 * 304.65159 * 6 3 2 9 9 C 1.34778 * 120.00138 * 300.00327 * 8 6 3 10 10 C 1.50691 * 120.00136 * 179.97438 * 9 8 6 11 11 O 1.21282 * 119.99571 * 359.97438 * 9 8 6 12 12 C 1.50699 * 109.47113 * 184.65317 * 6 3 2 13 13 O 1.21285 * 119.99752 * 97.19245 * 12 6 3 14 14 N 1.34772 * 119.99967 * 276.91592 * 12 6 3 15 15 C 1.46499 * 120.00015 * 185.16965 * 14 12 6 16 16 C 1.53002 * 109.47009 * 82.52325 * 15 14 12 17 17 H 1.09001 * 109.68203 * 300.66418 * 16 15 14 18 18 C 1.53289 * 109.68589 * 180.13816 * 16 15 14 19 19 O 1.42968 * 109.22696 * 187.97613 * 18 16 15 20 20 C 1.42955 * 114.16290 * 62.58077 * 19 18 16 21 21 C 1.53296 * 109.22641 * 297.42167 * 20 19 18 22 22 N 1.47150 * 108.38597 * 52.30174 * 21 20 19 23 23 C 1.36935 * 120.97969 * 129.48541 * 22 21 20 24 24 H 1.08002 * 120.00074 * 213.96731 * 23 22 21 25 25 C 1.38803 * 120.00038 * 33.97491 * 23 22 21 26 26 N 1.31619 * 120.00281 * 7.66385 * 25 23 22 27 27 Si 1.86806 * 119.99943 * 187.66640 * 25 23 22 28 28 H 1.48504 * 109.47197 * 94.99774 * 27 25 23 29 29 H 1.48506 * 109.47196 * 214.99504 * 27 25 23 30 30 H 1.48500 * 109.47126 * 334.99373 * 27 25 23 31 31 H 1.09010 * 109.46859 * 300.00419 * 1 2 3 32 32 H 1.08994 * 109.47225 * 59.99789 * 1 2 3 33 33 H 1.08994 * 109.47457 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47172 * 239.99716 * 2 1 3 35 35 H 1.09001 * 109.46995 * 119.99959 * 2 1 3 36 36 H 1.08997 * 109.47372 * 295.14467 * 5 3 2 37 37 H 1.08999 * 109.46945 * 55.14483 * 5 3 2 38 38 H 1.08998 * 109.46898 * 175.14052 * 5 3 2 39 39 H 0.97001 * 119.99845 * 120.00044 * 8 6 3 40 40 H 1.09003 * 109.47033 * 60.00257 * 10 9 8 41 41 H 1.09006 * 109.47131 * 179.97438 * 10 9 8 42 42 H 1.09001 * 109.47605 * 300.00247 * 10 9 8 43 43 H 0.96995 * 119.99998 * 5.17741 * 14 12 6 44 44 H 1.09001 * 109.47520 * 202.52445 * 15 14 12 45 45 H 1.08994 * 109.47360 * 322.52867 * 15 14 12 46 46 H 1.08998 * 109.51554 * 307.90183 * 18 16 15 47 47 H 1.09008 * 109.50836 * 68.00027 * 18 16 15 48 48 H 1.09000 * 109.51656 * 57.34856 * 20 19 18 49 49 H 1.09005 * 109.51269 * 177.50018 * 20 19 18 50 50 H 1.08997 * 109.68653 * 172.02858 * 21 20 19 51 51 H 1.09001 * 109.68110 * 292.58062 * 21 20 19 52 52 H 0.97000 * 120.00060 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4442 0.1256 7 1 4.0027 0.9779 -0.7569 8 7 3.9573 0.6928 1.3205 9 6 3.5299 1.0884 2.5359 10 6 3.9331 0.3151 3.7649 11 8 2.8209 2.0668 2.6406 12 6 4.0578 2.8637 0.2406 13 8 4.2945 3.3369 1.3319 14 7 4.2408 3.6055 -0.8697 15 6 4.8264 4.9444 -0.7677 16 6 6.3509 4.8309 -0.7045 17 1 6.6389 4.2330 0.1602 18 6 6.9688 6.2294 -0.5942 19 8 8.3890 6.1281 -0.7229 20 6 8.8276 5.6235 -1.9865 21 6 8.3050 4.1939 -2.1681 22 7 6.8521 4.1977 -1.9347 23 6 5.9920 3.6286 -2.8355 24 1 5.0129 4.0567 -2.9919 25 6 6.3785 2.5014 -3.5474 26 7 7.5063 1.8908 -3.2516 27 14 5.2979 1.8512 -4.9255 28 1 5.7687 2.3976 -6.2236 29 1 5.3734 0.3684 -4.9561 30 1 3.8925 2.2705 -4.6924 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.1388 1.6402 -2.1429 37 1 0.5561 2.0492 -1.4389 38 1 1.9227 3.1773 -1.2718 39 1 4.5246 -0.0896 1.2368 40 1 5.0194 0.3160 3.8546 41 1 3.4956 0.7817 4.6475 42 1 3.5762 -0.7115 3.6816 43 1 3.9847 3.2528 -1.7362 44 1 4.5418 5.5329 -1.6399 45 1 4.4608 5.4331 0.1353 46 1 6.5757 6.8647 -1.3879 47 1 6.7201 6.6618 0.3750 48 1 8.4414 6.2566 -2.7853 49 1 9.9172 5.6196 -2.0186 50 1 8.5129 3.8530 -3.1823 51 1 8.7903 3.5317 -1.4511 52 1 7.7765 1.1033 -3.7494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673076257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:12 Heat of formation + Delta-G solvation = -115.375152 kcal Electronic energy + Delta-G solvation = -33266.434967 eV Core-core repulsion = 29073.043755 eV Total energy + Delta-G solvation = -4193.391212 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.66981 -40.29377 -39.36078 -37.54773 -36.80636 -35.23887 -34.70552 -33.30205 -32.25013 -31.47687 -30.21679 -28.99471 -27.85033 -26.55041 -25.24905 -24.82549 -23.34083 -22.19310 -21.63614 -20.98591 -20.50738 -18.69240 -18.50920 -18.03510 -17.40934 -16.95434 -16.90372 -16.35943 -16.20510 -16.11607 -15.91997 -15.55589 -15.43443 -15.28464 -14.93717 -14.71585 -14.56785 -14.40599 -14.13238 -13.73782 -13.47181 -13.30388 -13.19699 -12.93431 -12.90094 -12.83694 -12.78196 -12.62414 -12.59925 -12.48334 -12.07687 -12.04559 -11.93179 -11.85278 -11.67759 -11.51559 -11.32316 -11.05130 -10.81433 -10.52111 -10.50108 -9.81836 -9.62119 -8.54615 -7.79830 -5.36152 1.49585 1.54672 1.60837 1.68309 1.96752 2.31394 2.49956 2.61477 3.02696 3.36841 3.48341 3.71866 3.84290 3.91409 4.06258 4.16674 4.25100 4.25875 4.27835 4.40130 4.49421 4.49636 4.55482 4.57462 4.62919 4.63992 4.65012 4.67832 4.70385 4.74840 4.79915 4.99520 5.06272 5.07382 5.09449 5.10872 5.17087 5.20885 5.27007 5.40593 5.49945 5.55583 5.58379 5.65307 5.74843 6.30866 6.40900 6.68874 6.79466 7.13253 7.42979 7.56207 7.79610 8.43134 9.25914 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010549 B = 0.004807 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.533038 B = 5823.960400 C = 7284.661590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.090 4.090 4 H 0.067 0.933 5 C -0.157 4.157 6 C 0.137 3.863 7 H 0.111 0.889 8 N -0.713 5.713 9 C 0.504 3.496 10 C -0.163 4.163 11 O -0.562 6.562 12 C 0.499 3.501 13 O -0.568 6.568 14 N -0.696 5.696 15 C 0.136 3.864 16 C 0.125 3.875 17 H -0.006 1.006 18 C 0.057 3.943 19 O -0.405 6.405 20 C 0.046 3.954 21 C 0.153 3.847 22 N -0.597 5.597 23 C -0.243 4.243 24 H 0.080 0.920 25 C -0.038 4.038 26 N -0.934 5.934 27 Si 0.949 3.051 28 H -0.296 1.296 29 H -0.298 1.298 30 H -0.247 1.247 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.415 0.585 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.116 0.884 43 H 0.409 0.591 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.100 0.900 48 H 0.052 0.948 49 H 0.101 0.899 50 H 0.068 0.932 51 H -0.011 1.011 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 -4.087 3.917 11.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.110 4.110 4 H 0.085 0.915 5 C -0.215 4.215 6 C 0.028 3.972 7 H 0.129 0.871 8 N -0.367 5.367 9 C 0.292 3.708 10 C -0.222 4.222 11 O -0.440 6.440 12 C 0.285 3.715 13 O -0.446 6.446 14 N -0.349 5.349 15 C 0.011 3.989 16 C 0.018 3.982 17 H 0.011 0.989 18 C -0.021 4.021 19 O -0.324 6.324 20 C -0.031 4.031 21 C 0.027 3.973 22 N -0.323 5.323 23 C -0.373 4.373 24 H 0.098 0.902 25 C -0.234 4.234 26 N -0.580 5.580 27 Si 0.777 3.223 28 H -0.224 1.224 29 H -0.225 1.225 30 H -0.170 1.170 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.252 0.748 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.248 0.752 44 H 0.113 0.887 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.118 0.882 48 H 0.071 0.929 49 H 0.119 0.881 50 H 0.086 0.914 51 H 0.007 0.993 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.044 -3.143 4.858 11.591 hybrid contribution 0.351 -1.087 -1.323 1.748 sum -9.692 -4.230 3.535 11.150 Atomic orbital electron populations 1.21777 0.94842 1.02172 1.01734 1.21467 0.96670 0.94069 1.02417 1.21357 0.91331 0.98850 0.99474 0.91466 1.22022 1.03082 1.00234 0.96126 1.20967 0.97209 0.89363 0.89664 0.87124 1.45664 1.53869 1.31798 1.05323 1.21394 0.79319 0.84346 0.85708 1.21882 1.04289 1.02068 0.93978 1.90671 1.38720 1.27764 1.86830 1.21242 0.77114 0.89039 0.84149 1.90663 1.52493 1.73415 1.28061 1.46059 1.61956 1.17288 1.09579 1.21146 0.90943 0.84566 1.02230 1.21592 0.94591 0.93411 0.88647 0.98869 1.22987 0.80990 0.95976 1.02154 1.87789 1.22505 1.85449 1.36627 1.23231 0.99564 0.95353 0.84974 1.21163 0.84232 0.92356 0.99566 1.44223 1.02051 1.66961 1.19024 1.19318 0.98522 1.04963 1.14517 0.90235 1.25907 0.98670 0.96404 1.02388 1.70144 1.24608 1.20881 1.42326 0.85533 0.80333 0.76993 0.79455 1.22387 1.22492 1.17036 0.93852 0.91867 0.91470 0.90920 0.91983 0.91551 0.90064 0.93249 0.74827 0.88695 0.89585 0.86541 0.75224 0.88683 0.91030 0.91888 0.88183 0.92946 0.88145 0.91350 0.99281 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.67 71.98 0.70 -2.03 16 2 C -0.11 -2.29 5.28 30.59 0.16 -2.13 16 3 C -0.09 -2.44 1.66 -10.79 -0.02 -2.46 16 4 H 0.07 2.26 6.31 -2.39 -0.02 2.25 16 5 C -0.16 -3.82 8.11 71.98 0.58 -3.24 16 6 C 0.14 4.30 2.60 44.24 0.12 4.41 16 7 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 8 N -0.71 -19.84 4.20 -446.11 -1.88 -21.72 16 9 C 0.50 15.41 6.57 87.65 0.58 15.99 16 10 C -0.16 -3.25 10.32 71.23 0.74 -2.51 16 11 O -0.56 -22.63 12.93 19.64 0.25 -22.38 16 12 C 0.50 19.61 6.29 87.66 0.55 20.16 16 13 O -0.57 -26.62 13.27 19.63 0.26 -26.36 16 14 N -0.70 -25.89 3.29 -463.07 -1.53 -27.41 16 15 C 0.14 5.02 4.78 86.38 0.41 5.43 16 16 C 0.13 5.33 3.32 44.96 0.15 5.48 16 17 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 18 C 0.06 2.11 6.29 72.08 0.45 2.57 16 19 O -0.40 -16.41 10.74 -148.98 -1.60 -18.01 16 20 C 0.05 1.81 6.98 72.08 0.50 2.32 16 21 C 0.15 7.28 5.35 86.35 0.46 7.75 16 22 N -0.60 -28.04 3.02 -673.74 -2.04 -30.08 16 23 C -0.24 -11.36 7.18 84.03 0.60 -10.76 16 24 H 0.08 3.42 5.35 -2.91 -0.02 3.40 16 25 C -0.04 -1.84 5.11 84.86 0.43 -1.40 16 26 N -0.93 -50.57 11.18 21.65 0.24 -50.33 16 27 Si 0.95 38.46 29.56 68.60 2.03 40.49 16 28 H -0.30 -12.49 7.11 99.48 0.71 -11.78 16 29 H -0.30 -12.47 7.11 99.48 0.71 -11.77 16 30 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 31 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.06 1.08 6.46 -2.39 -0.02 1.07 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.30 7.17 -2.39 -0.02 1.28 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.66 6.35 -2.39 -0.02 1.64 16 38 H 0.05 1.32 6.45 -2.39 -0.02 1.31 16 39 H 0.42 8.93 8.83 -92.71 -0.82 8.11 16 40 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.09 1.77 8.12 -2.38 -0.02 1.75 16 42 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.41 14.50 5.55 -92.71 -0.51 13.99 16 44 H 0.09 3.10 7.52 -2.39 -0.02 3.09 16 45 H 0.07 2.63 7.59 -2.39 -0.02 2.61 16 46 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.10 3.28 8.14 -2.38 -0.02 3.26 16 48 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.10 3.43 8.14 -2.38 -0.02 3.41 16 50 H 0.07 3.53 6.45 -2.39 -0.02 3.51 16 51 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 52 H 0.25 13.19 8.31 -92.71 -0.77 12.42 16 Total: -1.00 -72.22 395.34 1.76 -70.46 By element: Atomic # 1 Polarization: 46.16 SS G_CDS: -0.40 Total: 45.76 kcal Atomic # 6 Polarization: 33.16 SS G_CDS: 6.42 Total: 39.58 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -5.20 Total: -129.54 kcal Atomic # 8 Polarization: -65.66 SS G_CDS: -1.09 Total: -66.74 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -72.22 1.76 -70.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673076257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.917 kcal (2) G-P(sol) polarization free energy of solvation -72.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds