Wall clock time and date at job start Wed Apr 1 2020 00:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 C 1.50706 * 109.47348 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99503 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00081 * 179.72561 * 4 3 2 7 7 C 1.47426 * 125.64885 * 0.02562 * 6 4 3 8 8 C 1.54913 * 104.82832 * 204.09428 * 7 6 4 9 9 C 1.55153 * 101.58565 * 322.98920 * 8 7 6 10 10 C 1.47020 * 125.64653 * 179.71886 * 6 4 3 11 11 H 1.08997 * 109.88501 * 59.55627 * 10 6 4 12 12 C 1.50706 * 109.88310 * 298.39313 * 10 6 4 13 13 O 1.21282 * 119.99506 * 359.97438 * 12 10 6 14 14 N 1.34768 * 120.00074 * 180.02562 * 12 10 6 15 15 C 1.46500 * 120.00128 * 0.02562 * 14 12 10 16 16 C 1.46499 * 120.00021 * 179.97438 * 14 12 10 17 17 C 1.53000 * 109.47442 * 90.00022 * 16 14 12 18 18 H 1.08995 * 109.46687 * 59.99852 * 17 16 14 19 19 O 1.42897 * 109.46704 * 300.00074 * 17 16 14 20 20 C 1.53001 * 109.47238 * 179.97438 * 17 16 14 21 21 N 1.46503 * 109.46949 * 184.99758 * 20 17 16 22 22 C 1.36933 * 119.99743 * 180.02562 * 21 20 17 23 23 H 1.07998 * 120.00540 * 0.02562 * 22 21 20 24 24 C 1.38820 * 119.99575 * 180.02562 * 22 21 20 25 25 N 1.31611 * 119.99996 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99623 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47394 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47217 * 119.99566 * 26 24 22 29 29 H 1.48498 * 109.47025 * 239.99717 * 26 24 22 30 30 H 1.08994 * 109.47235 * 60.00181 * 1 2 3 31 31 H 1.09005 * 109.46828 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47441 * 299.99910 * 1 2 3 33 33 H 1.09000 * 109.47441 * 240.00090 * 2 1 3 34 34 H 1.09002 * 109.47087 * 119.99536 * 2 1 3 35 35 H 1.09001 * 109.47671 * 60.00109 * 3 2 1 36 36 H 1.08998 * 109.47454 * 300.00107 * 3 2 1 37 37 H 1.08996 * 110.36541 * 322.93420 * 7 6 4 38 38 H 1.08999 * 110.36039 * 85.14982 * 7 6 4 39 39 H 1.08997 * 111.00520 * 81.06994 * 8 7 6 40 40 H 1.09001 * 110.99990 * 204.91924 * 8 7 6 41 41 H 1.09002 * 110.72000 * 153.86087 * 9 8 7 42 42 H 1.08990 * 110.72260 * 276.96639 * 9 8 7 43 43 H 1.08992 * 109.47640 * 89.99721 * 15 14 12 44 44 H 1.09004 * 109.47197 * 210.00360 * 15 14 12 45 45 H 1.08998 * 109.47079 * 329.99141 * 15 14 12 46 46 H 1.09004 * 109.47370 * 210.00308 * 16 14 12 47 47 H 1.09003 * 109.47388 * 329.99604 * 16 14 12 48 48 H 0.96699 * 114.00548 * 300.00093 * 19 17 16 49 49 H 1.08996 * 109.47333 * 304.99814 * 20 17 16 50 50 H 1.09006 * 109.46779 * 65.00210 * 20 17 16 51 51 H 0.97001 * 119.99634 * 0.02562 * 21 20 17 52 52 H 0.97004 * 119.99813 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0015 6 7 4.2208 2.6098 -0.0048 7 6 3.6128 3.9529 -0.0112 8 6 4.6948 4.8749 -0.6269 9 6 5.9948 4.2658 -0.0385 10 6 5.6838 2.7546 0.0009 11 1 6.1080 2.2677 -0.8772 12 6 6.2544 2.1436 1.2549 13 8 5.5162 1.6343 2.0713 14 7 7.5847 2.1643 1.4695 15 6 8.4762 2.7811 0.4840 16 6 8.1393 1.5709 2.6887 17 6 8.4610 0.0963 2.4376 18 1 9.1892 0.0157 1.6306 19 8 7.2659 -0.5963 2.0718 20 6 9.0408 -0.5232 3.7108 21 7 9.4592 -1.9003 3.4370 22 6 10.0112 -2.6592 4.4342 23 1 10.1377 -2.2428 5.4226 24 6 10.4081 -3.9638 4.1746 25 7 10.2535 -4.4714 2.9702 26 14 11.1604 -4.9994 5.5352 27 1 11.2236 -4.2023 6.7866 28 1 10.3247 -6.2063 5.7583 29 1 12.5316 -5.4124 5.1422 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 2.7136 3.9593 -0.6272 38 1 3.3777 4.2675 1.0056 39 1 4.6904 4.8099 -1.7149 40 1 4.5627 5.9057 -0.2981 41 1 6.8452 4.4700 -0.6891 42 1 6.1790 4.6469 0.9659 43 1 8.6055 3.8369 0.7217 44 1 9.4449 2.2819 0.5078 45 1 8.0415 2.6831 -0.5107 46 1 9.0509 2.0993 2.9678 47 1 7.4112 1.6516 3.4958 48 1 6.5721 -0.5662 2.7447 49 1 9.9014 0.0595 4.0391 50 1 8.2818 -0.5228 4.4932 51 1 9.3452 -2.2743 2.5493 52 1 10.5305 -5.3832 2.7889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677138158.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:59 Heat of formation + Delta-G solvation = -105.052864 kcal Electronic energy + Delta-G solvation = -31449.462162 eV Core-core repulsion = 27256.518559 eV Total energy + Delta-G solvation = -4192.943604 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.92036 -39.20854 -37.64485 -36.84155 -35.22148 -34.46327 -33.87763 -32.01896 -31.24504 -30.43744 -28.94273 -27.89986 -26.91313 -25.44641 -24.04179 -22.75963 -22.05909 -21.60964 -20.97565 -20.02794 -18.65243 -17.74800 -17.20774 -17.06005 -16.37237 -16.05806 -15.81734 -15.79436 -15.06945 -14.80440 -14.47950 -14.33180 -14.14622 -14.02120 -13.73866 -13.50974 -13.35484 -13.08091 -12.99108 -12.85486 -12.62852 -12.56435 -12.29885 -12.16691 -12.04590 -11.88681 -11.83486 -11.64840 -11.38176 -11.33848 -11.25903 -10.86652 -10.86233 -10.77360 -10.51980 -10.05449 -9.86031 -9.76895 -9.68640 -9.48658 -8.82370 -8.74387 -8.39526 -6.83314 -5.66960 -2.96110 2.50278 2.72694 2.79761 3.15408 3.48604 3.53296 3.56281 4.00970 4.07521 4.36619 4.50527 4.62863 4.65150 4.72781 4.78236 4.84567 4.92276 5.00344 5.03937 5.10152 5.16209 5.25000 5.25499 5.28589 5.30923 5.36277 5.42108 5.43634 5.45915 5.54302 5.56724 5.62191 5.67703 5.75811 5.85573 5.87606 6.00029 6.02378 6.11645 6.22932 6.33778 6.54197 6.61916 6.85238 7.34483 7.43214 7.76260 8.18482 8.31988 8.39346 8.51463 9.62244 10.21486 10.57276 11.55578 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012574 B = 0.002689 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.361929 B =10412.155477 C =12172.233104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.130 4.130 4 C 0.529 3.471 5 O -0.508 6.508 6 N -0.609 5.609 7 C 0.100 3.900 8 C -0.132 4.132 9 C -0.124 4.124 10 C 0.122 3.878 11 H 0.098 0.902 12 C 0.515 3.485 13 O -0.516 6.516 14 N -0.609 5.609 15 C 0.076 3.924 16 C 0.087 3.913 17 C 0.085 3.915 18 H 0.093 0.907 19 O -0.541 6.541 20 C 0.127 3.873 21 N -0.725 5.725 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.929 5.929 26 Si 0.907 3.093 27 H -0.281 1.281 28 H -0.291 1.291 29 H -0.292 1.292 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.373 0.627 49 H 0.023 0.977 50 H 0.020 0.980 51 H 0.388 0.612 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.516 26.439 -10.936 32.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.170 4.170 4 C 0.318 3.682 5 O -0.381 6.381 6 N -0.345 5.345 7 C -0.023 4.023 8 C -0.170 4.170 9 C -0.162 4.162 10 C 0.014 3.986 11 H 0.116 0.884 12 C 0.301 3.699 13 O -0.390 6.390 14 N -0.344 5.344 15 C -0.068 4.068 16 C -0.036 4.036 17 C 0.024 3.976 18 H 0.111 0.889 19 O -0.346 6.346 20 C -0.002 4.002 21 N -0.370 5.370 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.578 5.578 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.220 0.780 49 H 0.041 0.959 50 H 0.037 0.963 51 H 0.223 0.777 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.255 25.308 -10.876 31.488 hybrid contribution 0.361 -0.529 0.992 1.181 sum -14.894 24.779 -9.883 30.553 Atomic orbital electron populations 1.21780 0.95557 1.02004 1.01490 1.21304 0.95099 0.94614 1.03972 1.21657 0.91361 1.00221 1.03766 1.20415 0.89967 0.82082 0.75732 1.90814 1.69994 1.30102 1.47224 1.48268 1.04880 1.06132 1.75246 1.22332 0.96854 0.81987 1.01131 1.22792 0.93839 0.99218 1.01102 1.22715 0.99008 0.91626 1.02858 1.21425 0.82974 0.96992 0.97189 0.88403 1.20589 0.81922 0.79360 0.88016 1.90661 1.58354 1.43744 1.46240 1.47615 1.06047 1.58688 1.22018 1.21895 0.95194 0.97637 0.92028 1.22229 0.99489 0.95049 0.86860 1.22461 0.87933 0.88874 0.98287 0.88906 1.86599 1.24965 1.76329 1.46709 1.21239 0.96446 0.88375 0.94151 1.42268 1.73849 1.08497 1.12372 1.19268 1.32243 0.94063 0.91586 0.91267 1.24769 1.02258 0.97323 0.96724 1.69699 1.53206 1.15352 1.19515 0.86113 0.78537 0.80445 0.81070 1.20613 1.21857 1.21902 0.92893 0.92333 0.92759 0.91220 0.90857 0.89168 0.89408 0.90199 0.91280 0.90108 0.89396 0.88945 0.90059 0.92524 0.90670 0.91283 0.89807 0.89737 0.78005 0.95940 0.96268 0.77728 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.11 -1.19 5.22 -26.73 -0.14 -1.33 16 3 C -0.13 -1.23 4.71 -27.88 -0.13 -1.36 16 4 C 0.53 7.24 7.00 -10.98 -0.08 7.17 16 5 O -0.51 -9.64 15.29 -7.93 -0.12 -9.76 16 6 N -0.61 -6.68 2.84 -164.31 -0.47 -7.14 16 7 C 0.10 0.64 6.69 -2.53 -0.02 0.62 16 8 C -0.13 -0.57 7.09 -24.58 -0.17 -0.74 16 9 C -0.12 -0.75 5.05 -24.89 -0.13 -0.88 16 10 C 0.12 1.32 2.39 -68.09 -0.16 1.15 16 11 H 0.10 1.10 7.36 -51.93 -0.38 0.72 16 12 C 0.52 7.47 6.10 -10.99 -0.07 7.40 16 13 O -0.52 -9.49 13.45 -16.59 -0.22 -9.71 16 14 N -0.61 -7.75 2.83 -181.57 -0.51 -8.27 16 15 C 0.08 0.64 8.99 59.85 0.54 1.18 16 16 C 0.09 1.24 5.15 -4.04 -0.02 1.22 16 17 C 0.09 1.58 3.27 -26.73 -0.09 1.49 16 18 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 19 O -0.54 -11.75 12.09 -43.94 -0.53 -12.28 16 20 C 0.13 2.73 5.90 -4.04 -0.02 2.70 16 21 N -0.73 -19.97 5.55 -59.90 -0.33 -20.30 16 22 C -0.24 -7.15 9.99 -15.06 -0.15 -7.30 16 23 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 24 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 25 N -0.93 -29.87 13.06 55.49 0.72 -29.14 16 26 Si 0.91 23.43 29.55 -169.99 -5.02 18.40 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 29 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.59 7.84 -51.93 -0.41 0.19 16 37 H 0.08 0.35 7.47 -51.93 -0.39 -0.04 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.09 0.37 7.20 -51.93 -0.37 -0.01 16 42 H 0.08 0.53 7.84 -51.93 -0.41 0.12 16 43 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 44 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 45 H 0.07 0.50 5.90 -51.93 -0.31 0.20 16 46 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 47 H 0.08 1.28 7.42 -51.93 -0.39 0.90 16 48 H 0.37 7.89 8.45 45.56 0.38 8.27 16 49 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 51 H 0.39 11.56 7.67 -40.82 -0.31 11.25 16 52 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 413.88 15.07 6.24 6.24 Total: -1.00 -40.18 413.88 -9.06 -49.24 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -8.44 Total: 12.76 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -0.37 Total: 9.97 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -0.59 Total: -64.85 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.88 Total: -31.76 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.40 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -40.18 -9.06 -49.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677138158.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.816 kcal (2) G-P(sol) polarization free energy of solvation -40.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds