Wall clock time and date at job start Wed Apr 1 2020 00:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 C 1.50706 * 109.47348 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99503 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00081 * 179.72561 * 4 3 2 7 7 C 1.47426 * 125.64885 * 0.02562 * 6 4 3 8 8 C 1.54913 * 104.82832 * 204.09428 * 7 6 4 9 9 C 1.55153 * 101.58565 * 322.98920 * 8 7 6 10 10 C 1.47020 * 125.64653 * 179.71886 * 6 4 3 11 11 H 1.08997 * 109.88501 * 59.55627 * 10 6 4 12 12 C 1.50706 * 109.88310 * 298.39313 * 10 6 4 13 13 O 1.21282 * 119.99506 * 359.97438 * 12 10 6 14 14 N 1.34768 * 120.00074 * 180.02562 * 12 10 6 15 15 C 1.46500 * 120.00128 * 0.02562 * 14 12 10 16 16 C 1.46499 * 120.00021 * 179.97438 * 14 12 10 17 17 C 1.53000 * 109.47442 * 90.00022 * 16 14 12 18 18 H 1.08995 * 109.46687 * 59.99852 * 17 16 14 19 19 O 1.42897 * 109.46704 * 300.00074 * 17 16 14 20 20 C 1.53001 * 109.47238 * 179.97438 * 17 16 14 21 21 N 1.46503 * 109.46949 * 184.99758 * 20 17 16 22 22 C 1.36933 * 119.99743 * 180.02562 * 21 20 17 23 23 H 1.07998 * 120.00540 * 0.02562 * 22 21 20 24 24 C 1.38820 * 119.99575 * 180.02562 * 22 21 20 25 25 N 1.31611 * 119.99996 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99623 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47394 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47217 * 119.99566 * 26 24 22 29 29 H 1.48498 * 109.47025 * 239.99717 * 26 24 22 30 30 H 1.08994 * 109.47235 * 60.00181 * 1 2 3 31 31 H 1.09005 * 109.46828 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47441 * 299.99910 * 1 2 3 33 33 H 1.09000 * 109.47441 * 240.00090 * 2 1 3 34 34 H 1.09002 * 109.47087 * 119.99536 * 2 1 3 35 35 H 1.09001 * 109.47671 * 60.00109 * 3 2 1 36 36 H 1.08998 * 109.47454 * 300.00107 * 3 2 1 37 37 H 1.08996 * 110.36541 * 322.93420 * 7 6 4 38 38 H 1.08999 * 110.36039 * 85.14982 * 7 6 4 39 39 H 1.08997 * 111.00520 * 81.06994 * 8 7 6 40 40 H 1.09001 * 110.99990 * 204.91924 * 8 7 6 41 41 H 1.09002 * 110.72000 * 153.86087 * 9 8 7 42 42 H 1.08990 * 110.72260 * 276.96639 * 9 8 7 43 43 H 1.08992 * 109.47640 * 89.99721 * 15 14 12 44 44 H 1.09004 * 109.47197 * 210.00360 * 15 14 12 45 45 H 1.08998 * 109.47079 * 329.99141 * 15 14 12 46 46 H 1.09004 * 109.47370 * 210.00308 * 16 14 12 47 47 H 1.09003 * 109.47388 * 329.99604 * 16 14 12 48 48 H 0.96699 * 114.00548 * 300.00093 * 19 17 16 49 49 H 1.08996 * 109.47333 * 304.99814 * 20 17 16 50 50 H 1.09006 * 109.46779 * 65.00210 * 20 17 16 51 51 H 0.97001 * 119.99634 * 0.02562 * 21 20 17 52 52 H 0.97004 * 119.99813 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0015 6 7 4.2208 2.6098 -0.0048 7 6 3.6128 3.9529 -0.0112 8 6 4.6948 4.8749 -0.6269 9 6 5.9948 4.2658 -0.0385 10 6 5.6838 2.7546 0.0009 11 1 6.1080 2.2677 -0.8772 12 6 6.2544 2.1436 1.2549 13 8 5.5162 1.6343 2.0713 14 7 7.5847 2.1643 1.4695 15 6 8.4762 2.7811 0.4840 16 6 8.1393 1.5709 2.6887 17 6 8.4610 0.0963 2.4376 18 1 9.1892 0.0157 1.6306 19 8 7.2659 -0.5963 2.0718 20 6 9.0408 -0.5232 3.7108 21 7 9.4592 -1.9003 3.4370 22 6 10.0112 -2.6592 4.4342 23 1 10.1377 -2.2428 5.4226 24 6 10.4081 -3.9638 4.1746 25 7 10.2535 -4.4714 2.9702 26 14 11.1604 -4.9994 5.5352 27 1 11.2236 -4.2023 6.7866 28 1 10.3247 -6.2063 5.7583 29 1 12.5316 -5.4124 5.1422 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 2.7136 3.9593 -0.6272 38 1 3.3777 4.2675 1.0056 39 1 4.6904 4.8099 -1.7149 40 1 4.5627 5.9057 -0.2981 41 1 6.8452 4.4700 -0.6891 42 1 6.1790 4.6469 0.9659 43 1 8.6055 3.8369 0.7217 44 1 9.4449 2.2819 0.5078 45 1 8.0415 2.6831 -0.5107 46 1 9.0509 2.0993 2.9678 47 1 7.4112 1.6516 3.4958 48 1 6.5721 -0.5662 2.7447 49 1 9.9014 0.0595 4.0391 50 1 8.2818 -0.5228 4.4932 51 1 9.3452 -2.2743 2.5493 52 1 10.5305 -5.3832 2.7889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677138158.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:58 Heat of formation + Delta-G solvation = -135.823935 kcal Electronic energy + Delta-G solvation = -31450.796496 eV Core-core repulsion = 27256.518559 eV Total energy + Delta-G solvation = -4194.277937 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.83018 -40.30311 -38.84172 -38.03091 -36.43865 -35.90394 -35.31501 -33.29481 -32.74018 -31.52465 -30.16518 -28.67631 -27.94015 -26.90635 -25.12356 -24.33915 -22.88854 -22.64053 -22.19032 -20.95468 -19.58756 -19.28003 -18.64627 -18.11045 -17.73029 -17.07309 -16.94032 -16.70984 -16.52323 -16.32023 -15.99405 -15.51844 -15.27282 -15.01250 -14.91555 -14.58334 -14.39921 -14.22285 -14.06365 -13.81547 -13.76920 -13.69256 -13.28686 -13.23544 -12.99851 -12.90092 -12.83891 -12.71308 -12.66409 -12.59122 -12.17925 -12.16527 -12.04599 -11.91330 -11.86535 -11.76258 -11.66401 -11.18317 -11.02992 -10.83878 -10.80710 -9.64983 -9.54110 -9.07277 -7.98622 -5.29823 1.42483 1.45584 1.54780 1.55821 1.70075 1.93588 2.22358 2.52183 3.31362 3.37515 3.46223 3.48664 3.71726 3.77658 3.81309 3.95743 3.99331 4.04817 4.07451 4.17480 4.21059 4.29822 4.43916 4.46319 4.50318 4.55240 4.63517 4.64581 4.68160 4.75835 4.78834 4.81705 4.84235 4.86174 4.90348 4.94479 5.09448 5.17326 5.20090 5.23569 5.26776 5.34452 5.41413 5.43043 5.51705 6.21379 6.39425 6.54365 6.71079 7.19813 7.27071 7.31657 8.02261 8.26151 9.25266 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012574 B = 0.002689 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.361929 B =10412.155477 C =12172.233104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.121 4.121 4 C 0.515 3.485 5 O -0.579 6.579 6 N -0.610 5.610 7 C 0.089 3.911 8 C -0.119 4.119 9 C -0.115 4.115 10 C 0.116 3.884 11 H 0.089 0.911 12 C 0.502 3.498 13 O -0.566 6.566 14 N -0.610 5.610 15 C 0.067 3.933 16 C 0.099 3.901 17 C 0.092 3.908 18 H 0.087 0.913 19 O -0.565 6.565 20 C 0.126 3.874 21 N -0.743 5.743 22 C -0.249 4.249 23 H 0.079 0.921 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.982 3.018 27 H -0.262 1.262 28 H -0.294 1.294 29 H -0.288 1.288 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.035 0.965 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.119 0.881 47 H 0.072 0.928 48 H 0.370 0.630 49 H 0.045 0.955 50 H 0.017 0.983 51 H 0.372 0.628 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.680 30.291 -11.196 35.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.160 4.160 4 C 0.306 3.694 5 O -0.458 6.458 6 N -0.344 5.344 7 C -0.032 4.032 8 C -0.157 4.157 9 C -0.153 4.153 10 C 0.008 3.992 11 H 0.107 0.893 12 C 0.290 3.710 13 O -0.444 6.444 14 N -0.343 5.343 15 C -0.075 4.075 16 C -0.025 4.025 17 C 0.032 3.968 18 H 0.105 0.895 19 O -0.370 6.370 20 C -0.001 4.001 21 N -0.385 5.385 22 C -0.381 4.381 23 H 0.097 0.903 24 C -0.273 4.273 25 N -0.622 5.622 26 Si 0.810 3.190 27 H -0.187 1.187 28 H -0.222 1.222 29 H -0.215 1.215 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.125 0.875 36 H 0.143 0.857 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.137 0.863 47 H 0.090 0.910 48 H 0.217 0.783 49 H 0.063 0.937 50 H 0.035 0.965 51 H 0.204 0.796 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.405 29.289 -11.136 34.917 hybrid contribution 0.420 -1.660 1.057 2.012 sum -14.985 27.630 -10.079 33.008 Atomic orbital electron populations 1.21728 0.92893 1.02367 1.03022 1.21265 0.97300 0.95214 1.01296 1.21682 0.88482 0.99688 1.06144 1.21229 0.91663 0.81939 0.74602 1.90773 1.71577 1.32755 1.50683 1.48466 1.05364 1.07232 1.73372 1.22709 0.98548 0.79858 1.02092 1.22833 0.91404 0.99796 1.01636 1.22785 1.01143 0.87637 1.03740 1.21627 0.82964 1.00040 0.94536 0.89336 1.21400 0.82219 0.78698 0.88680 1.90630 1.59695 1.45905 1.48180 1.47745 1.06258 1.58054 1.22201 1.22231 0.94255 0.99416 0.91575 1.21984 1.00669 0.92299 0.87521 1.22478 0.86475 0.91347 0.96500 0.89529 1.86575 1.25868 1.77452 1.47098 1.21428 0.96991 0.86029 0.95664 1.42508 1.74070 1.10665 1.11265 1.19725 1.31407 0.94609 0.92315 0.90315 1.25729 1.03456 0.98813 0.99296 1.69883 1.54906 1.15542 1.21901 0.84959 0.77254 0.78259 0.78562 1.18651 1.22169 1.21517 0.90716 0.92667 0.91723 0.93071 0.94567 0.87547 0.85712 0.87630 0.91256 0.88866 0.86661 0.86166 0.90156 0.88786 0.90643 0.90192 0.86292 0.90951 0.78290 0.93707 0.96526 0.79647 0.93984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 71.98 0.71 -1.40 16 2 C -0.11 -2.53 5.22 30.59 0.16 -2.37 16 3 C -0.12 -2.23 4.71 29.85 0.14 -2.09 16 4 C 0.52 14.66 7.00 87.66 0.61 15.28 16 5 O -0.58 -23.93 15.29 9.85 0.15 -23.78 16 6 N -0.61 -13.04 2.84 -792.15 -2.25 -15.29 16 7 C 0.09 0.88 6.69 86.86 0.58 1.46 16 8 C -0.12 -0.53 7.09 31.99 0.23 -0.30 16 9 C -0.12 -1.02 5.05 31.79 0.16 -0.86 16 10 C 0.12 2.43 2.39 44.60 0.11 2.53 16 11 H 0.09 1.99 7.36 -2.39 -0.02 1.98 16 12 C 0.50 14.78 6.10 87.66 0.53 15.31 16 13 O -0.57 -21.98 13.45 18.14 0.24 -21.74 16 14 N -0.61 -15.08 2.83 -846.76 -2.39 -17.48 16 15 C 0.07 0.97 8.99 127.77 1.15 2.12 16 16 C 0.10 2.77 5.15 86.38 0.44 3.22 16 17 C 0.09 3.49 3.27 30.59 0.10 3.59 16 18 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 19 O -0.56 -26.11 12.09 -140.65 -1.70 -27.81 16 20 C 0.13 5.49 5.90 86.38 0.51 6.00 16 21 N -0.74 -41.93 5.55 -343.44 -1.91 -43.83 16 22 C -0.25 -14.96 9.99 84.04 0.84 -14.12 16 23 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 24 C -0.08 -4.98 5.50 84.87 0.47 -4.51 16 25 N -0.97 -64.20 13.06 21.65 0.28 -63.92 16 26 Si 0.98 48.73 29.55 68.60 2.03 50.76 16 27 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 28 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 29 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 34 H 0.04 1.05 8.10 -2.39 -0.02 1.03 16 35 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.12 1.35 7.84 -2.39 -0.02 1.34 16 37 H 0.11 0.51 7.47 -2.39 -0.02 0.49 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.12 0.41 7.20 -2.39 -0.02 0.40 16 42 H 0.08 0.78 7.84 -2.39 -0.02 0.76 16 43 H 0.09 0.71 7.90 -2.39 -0.02 0.69 16 44 H 0.07 1.12 8.07 -2.39 -0.02 1.10 16 45 H 0.08 1.00 5.90 -2.39 -0.01 0.98 16 46 H 0.12 2.47 8.07 -2.38 -0.02 2.45 16 47 H 0.07 2.23 7.42 -2.39 -0.02 2.21 16 48 H 0.37 17.05 8.45 -74.06 -0.63 16.42 16 49 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 51 H 0.37 23.09 7.67 -92.71 -0.71 22.38 16 52 H 0.25 15.94 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -94.81 413.88 0.78 -94.03 By element: Atomic # 1 Polarization: 45.62 SS G_CDS: -0.42 Total: 45.20 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 6.75 Total: 23.86 kcal Atomic # 7 Polarization: -134.26 SS G_CDS: -6.27 Total: -140.52 kcal Atomic # 8 Polarization: -72.02 SS G_CDS: -1.31 Total: -73.33 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.03 Total: 50.76 kcal Total: -94.81 0.78 -94.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677138158.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.791 kcal (2) G-P(sol) polarization free energy of solvation -94.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds