Wall clock time and date at job start Wed Apr 1 2020 00:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47145 * 2 1 4 4 C 1.50700 * 109.47038 * 180.02562 * 3 2 1 5 5 O 1.21284 * 120.00312 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99743 * 180.02562 * 4 3 2 7 7 C 1.47426 * 125.64983 * 0.02562 * 6 4 3 8 8 C 1.54918 * 104.83213 * 204.09565 * 7 6 4 9 9 C 1.55163 * 101.57907 * 322.98769 * 8 7 6 10 10 C 1.47025 * 125.64976 * 179.97438 * 6 4 3 11 11 H 1.09001 * 109.88130 * 298.39514 * 10 6 4 12 12 C 1.50704 * 110.00810 * 59.48176 * 10 6 4 13 13 O 1.21283 * 119.99926 * 24.22162 * 12 10 6 14 14 N 1.34775 * 119.99929 * 204.21325 * 12 10 6 15 15 C 1.46498 * 120.00164 * 4.67947 * 14 12 10 16 16 C 1.46510 * 119.99893 * 184.67718 * 14 12 10 17 17 C 1.52997 * 109.46854 * 90.00326 * 16 14 12 18 18 H 1.09004 * 109.47113 * 304.99595 * 17 16 14 19 19 O 1.42897 * 109.47687 * 65.00216 * 17 16 14 20 20 C 1.52998 * 109.46832 * 185.00172 * 17 16 14 21 21 N 1.46503 * 109.47521 * 180.02562 * 20 17 16 22 22 C 1.36930 * 120.00335 * 179.97438 * 21 20 17 23 23 H 1.08006 * 120.00254 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99931 * 180.02562 * 22 21 20 25 25 N 1.31611 * 120.00117 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99830 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46975 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47246 * 119.99867 * 26 24 22 29 29 H 1.48495 * 109.47088 * 239.99833 * 26 24 22 30 30 H 1.08991 * 109.47376 * 59.99840 * 1 2 3 31 31 H 1.09001 * 109.47392 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46983 * 299.99566 * 1 2 3 33 33 H 1.09005 * 109.46983 * 240.00434 * 2 1 3 34 34 H 1.08996 * 109.47371 * 120.00661 * 2 1 3 35 35 H 1.09005 * 109.46825 * 60.00338 * 3 2 1 36 36 H 1.08991 * 109.47113 * 300.00321 * 3 2 1 37 37 H 1.08999 * 110.36599 * 85.25554 * 7 6 4 38 38 H 1.09002 * 110.36605 * 322.93177 * 7 6 4 39 39 H 1.08992 * 111.00177 * 81.06169 * 8 7 6 40 40 H 1.08997 * 110.99846 * 204.87942 * 8 7 6 41 41 H 1.09003 * 110.71563 * 153.86658 * 9 8 7 42 42 H 1.08996 * 110.72051 * 276.95999 * 9 8 7 43 43 H 1.08998 * 109.46908 * 84.58680 * 15 14 12 44 44 H 1.08998 * 109.47123 * 204.58622 * 15 14 12 45 45 H 1.08996 * 109.47365 * 324.58291 * 15 14 12 46 46 H 1.08998 * 109.46703 * 210.00270 * 16 14 12 47 47 H 1.09004 * 109.46881 * 330.00201 * 16 14 12 48 48 H 0.96702 * 114.00129 * 59.99153 * 19 17 16 49 49 H 1.09001 * 109.47298 * 299.99641 * 20 17 16 50 50 H 1.09009 * 109.47530 * 59.99768 * 20 17 16 51 51 H 0.97001 * 119.99447 * 359.97438 * 21 20 17 52 52 H 0.97001 * 120.00288 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2208 2.6097 -0.0002 7 6 3.6129 3.9528 0.0014 8 6 4.6943 4.8783 -0.6101 9 6 5.9949 4.2658 -0.0261 10 6 5.6839 2.7545 -0.0002 11 1 6.1008 2.3055 0.9013 12 6 6.2678 2.0901 -1.2204 13 8 5.5869 1.9381 -2.2125 14 7 7.5467 1.6650 -1.2092 15 6 8.3379 1.7551 0.0205 16 6 8.1457 1.1127 -2.4268 17 6 8.7961 2.2396 -3.2316 18 1 8.0598 3.0198 -3.4248 19 8 9.8870 2.7875 -2.4887 20 6 9.3120 1.6849 -4.5609 21 7 9.9354 2.7638 -5.3314 22 6 10.4728 2.5031 -6.5636 23 1 10.4376 1.5019 -6.9673 24 6 11.0640 3.5253 -7.2934 25 7 11.1074 4.7452 -6.8012 26 14 11.7965 3.1698 -8.9745 27 1 11.6198 1.7311 -9.2973 28 1 11.1084 3.9956 -9.9991 29 1 13.2443 3.4999 -8.9635 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6766 1.9563 -0.8899 37 1 3.3803 4.2627 1.0202 38 1 2.7131 3.9627 -0.6139 39 1 4.6891 4.8192 -1.6984 40 1 4.5621 5.9073 -0.2761 41 1 6.8447 4.4737 -0.6763 42 1 6.1800 4.6414 0.9802 43 1 8.1447 0.8806 0.6417 44 1 9.3976 1.7950 -0.2314 45 1 8.0600 2.6569 0.5660 46 1 8.9019 0.3753 -2.1574 47 1 7.3717 0.6362 -3.0286 48 1 10.5817 2.1478 -2.2805 49 1 10.0482 0.9047 -4.3678 50 1 8.4799 1.2670 -5.1277 51 1 9.9673 3.6629 -4.9687 52 1 11.5201 5.4596 -7.3113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677138159.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:02 Heat of formation + Delta-G solvation = -108.673292 kcal Electronic energy + Delta-G solvation = -31200.853595 eV Core-core repulsion = 27007.752998 eV Total energy + Delta-G solvation = -4193.100597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.99120 -39.31632 -37.79166 -37.02711 -35.14945 -34.62275 -33.97434 -32.06949 -31.39586 -30.43700 -29.07682 -28.02990 -26.74474 -25.50636 -24.08184 -22.89855 -22.10221 -21.68068 -21.16072 -19.96554 -18.78405 -17.62615 -17.32231 -17.12298 -16.60009 -16.07926 -15.91351 -15.78895 -15.20942 -15.00333 -14.62852 -14.41842 -14.22442 -13.91657 -13.61964 -13.58635 -13.47962 -13.06998 -13.05816 -12.87489 -12.80305 -12.59143 -12.37964 -12.26982 -12.06288 -11.99814 -11.68930 -11.64523 -11.44517 -11.37758 -11.30753 -11.01083 -10.91127 -10.81383 -10.64224 -10.12789 -10.00698 -9.96359 -9.77305 -9.64330 -8.87128 -8.83345 -8.43367 -6.88560 -5.72154 -3.01160 2.35980 2.55378 2.75470 3.09541 3.45522 3.50820 3.53345 4.05815 4.19454 4.37683 4.49787 4.58970 4.59308 4.62738 4.72330 4.77946 4.86433 5.00875 5.04518 5.08679 5.13796 5.18590 5.22748 5.24537 5.31853 5.36830 5.40970 5.42884 5.49978 5.57701 5.59679 5.62882 5.71694 5.74577 5.85070 5.87560 5.89008 5.93493 6.03032 6.06751 6.27392 6.52129 6.59158 6.78716 7.22504 7.37760 7.72452 7.98155 8.04484 8.22815 8.46183 9.57669 10.15796 10.52031 11.50403 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.002326 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.965669 B =12036.019221 C =12378.816495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.133 4.133 4 C 0.532 3.468 5 O -0.532 6.532 6 N -0.604 5.604 7 C 0.102 3.898 8 C -0.133 4.133 9 C -0.122 4.122 10 C 0.120 3.880 11 H 0.094 0.906 12 C 0.513 3.487 13 O -0.526 6.526 14 N -0.605 5.605 15 C 0.081 3.919 16 C 0.088 3.912 17 C 0.089 3.911 18 H 0.098 0.902 19 O -0.551 6.551 20 C 0.126 3.874 21 N -0.725 5.725 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.930 5.930 26 Si 0.907 3.093 27 H -0.281 1.281 28 H -0.291 1.291 29 H -0.292 1.292 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.367 0.633 49 H 0.020 0.980 50 H 0.027 0.973 51 H 0.389 0.611 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.679 -2.855 23.047 29.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.172 4.172 4 C 0.322 3.678 5 O -0.408 6.408 6 N -0.340 5.340 7 C -0.021 4.021 8 C -0.171 4.171 9 C -0.160 4.160 10 C 0.013 3.987 11 H 0.112 0.888 12 C 0.299 3.701 13 O -0.401 6.401 14 N -0.339 5.339 15 C -0.062 4.062 16 C -0.036 4.036 17 C 0.028 3.972 18 H 0.116 0.884 19 O -0.355 6.355 20 C -0.003 4.003 21 N -0.370 5.370 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.579 5.579 26 Si 0.739 3.261 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.111 0.889 48 H 0.213 0.787 49 H 0.038 0.962 50 H 0.045 0.955 51 H 0.223 0.777 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.094 -3.152 22.322 28.907 hybrid contribution 0.902 -0.319 -0.835 1.270 sum -17.192 -3.471 21.487 27.737 Atomic orbital electron populations 1.21783 0.95396 1.02000 1.01736 1.21293 0.95279 0.94607 1.03651 1.21678 0.91078 1.00268 1.04213 1.20467 0.90181 0.81953 0.75226 1.90714 1.70384 1.30527 1.49192 1.48342 1.05173 1.06399 1.74048 1.22378 0.97272 0.81535 1.00927 1.22818 0.93312 0.98985 1.02003 1.22618 0.99590 0.90702 1.03103 1.21534 0.82482 0.97546 0.97159 0.88798 1.20670 0.81469 0.78388 0.89557 1.90694 1.59312 1.55267 1.34797 1.47631 1.11731 1.62720 1.11802 1.21823 0.97142 1.01177 0.86103 1.22212 0.98766 0.96268 0.86343 1.22522 0.88563 0.95795 0.90309 0.88450 1.86597 1.32711 1.40618 1.75573 1.21219 0.95810 0.92437 0.90813 1.42240 1.69112 1.07397 1.18224 1.19278 1.29668 0.94673 0.93511 0.91224 1.24760 1.01840 0.95553 0.98903 1.69691 1.49936 1.00076 1.38185 0.86108 0.78581 0.77295 0.84165 1.20578 1.21854 1.21874 0.92612 0.92365 0.92752 0.91094 0.91315 0.89069 0.88817 0.90889 0.90199 0.89786 0.89148 0.89001 0.89258 0.92916 0.89999 0.91507 0.90199 0.88945 0.78681 0.96235 0.95544 0.77707 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.15 0.37 -0.61 16 2 C -0.11 -0.98 5.22 -26.73 -0.14 -1.12 16 3 C -0.13 -1.12 4.71 -27.88 -0.13 -1.25 16 4 C 0.53 6.69 7.33 -10.99 -0.08 6.60 16 5 O -0.53 -8.82 15.73 5.55 0.09 -8.74 16 6 N -0.60 -6.60 2.79 -164.31 -0.46 -7.06 16 7 C 0.10 0.72 6.69 -2.52 -0.02 0.71 16 8 C -0.13 -1.02 7.09 -24.57 -0.17 -1.20 16 9 C -0.12 -1.02 5.96 -24.89 -0.15 -1.17 16 10 C 0.12 1.34 2.39 -68.10 -0.16 1.18 16 11 H 0.09 0.94 6.82 -51.93 -0.35 0.59 16 12 C 0.51 7.74 5.92 -10.98 -0.07 7.67 16 13 O -0.53 -10.06 15.88 5.56 0.09 -9.97 16 14 N -0.61 -8.14 2.84 -181.57 -0.52 -8.65 16 15 C 0.08 0.77 9.58 59.85 0.57 1.34 16 16 C 0.09 1.27 5.08 -4.04 -0.02 1.25 16 17 C 0.09 1.53 3.30 -26.73 -0.09 1.45 16 18 H 0.10 1.95 8.14 -51.93 -0.42 1.52 16 19 O -0.55 -9.12 12.01 -35.23 -0.42 -9.54 16 20 C 0.13 2.63 5.92 -4.04 -0.02 2.61 16 21 N -0.72 -19.25 5.49 -59.90 -0.33 -19.58 16 22 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 23 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 24 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -29.06 13.06 55.49 0.72 -28.34 16 26 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.71 7.85 -51.93 -0.41 0.31 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.49 7.48 -51.93 -0.39 0.10 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.92 7.82 -51.93 -0.41 0.51 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.71 7.23 -51.93 -0.38 0.34 16 45 H 0.07 0.52 6.30 -51.93 -0.33 0.20 16 46 H 0.08 0.96 8.07 -51.93 -0.42 0.55 16 47 H 0.09 1.53 7.36 -51.93 -0.38 1.14 16 48 H 0.37 4.86 9.04 45.56 0.41 5.27 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.03 0.58 8.14 -51.92 -0.42 0.15 16 51 H 0.39 11.06 7.54 -40.82 -0.31 10.75 16 52 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 418.80 15.07 6.31 6.31 Total: -1.00 -38.78 418.80 -8.31 -47.09 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -8.42 Total: 10.72 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -0.36 Total: 9.80 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -0.58 Total: -63.64 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.25 Total: -28.24 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -38.78 -8.31 -47.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677138159.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.588 kcal (2) G-P(sol) polarization free energy of solvation -38.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds