Wall clock time and date at job start Wed Apr 1 2020 00:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47145 * 2 1 4 4 C 1.50700 * 109.47038 * 180.02562 * 3 2 1 5 5 O 1.21284 * 120.00312 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99743 * 180.02562 * 4 3 2 7 7 C 1.47426 * 125.64983 * 0.02562 * 6 4 3 8 8 C 1.54918 * 104.83213 * 204.09565 * 7 6 4 9 9 C 1.55163 * 101.57907 * 322.98769 * 8 7 6 10 10 C 1.47025 * 125.64976 * 179.97438 * 6 4 3 11 11 H 1.09001 * 109.88130 * 298.39514 * 10 6 4 12 12 C 1.50704 * 110.00810 * 59.48176 * 10 6 4 13 13 O 1.21283 * 119.99926 * 24.22162 * 12 10 6 14 14 N 1.34775 * 119.99929 * 204.21325 * 12 10 6 15 15 C 1.46498 * 120.00164 * 4.67947 * 14 12 10 16 16 C 1.46510 * 119.99893 * 184.67718 * 14 12 10 17 17 C 1.52997 * 109.46854 * 90.00326 * 16 14 12 18 18 H 1.09004 * 109.47113 * 304.99595 * 17 16 14 19 19 O 1.42897 * 109.47687 * 65.00216 * 17 16 14 20 20 C 1.52998 * 109.46832 * 185.00172 * 17 16 14 21 21 N 1.46503 * 109.47521 * 180.02562 * 20 17 16 22 22 C 1.36930 * 120.00335 * 179.97438 * 21 20 17 23 23 H 1.08006 * 120.00254 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99931 * 180.02562 * 22 21 20 25 25 N 1.31611 * 120.00117 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99830 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46975 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47246 * 119.99867 * 26 24 22 29 29 H 1.48495 * 109.47088 * 239.99833 * 26 24 22 30 30 H 1.08991 * 109.47376 * 59.99840 * 1 2 3 31 31 H 1.09001 * 109.47392 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46983 * 299.99566 * 1 2 3 33 33 H 1.09005 * 109.46983 * 240.00434 * 2 1 3 34 34 H 1.08996 * 109.47371 * 120.00661 * 2 1 3 35 35 H 1.09005 * 109.46825 * 60.00338 * 3 2 1 36 36 H 1.08991 * 109.47113 * 300.00321 * 3 2 1 37 37 H 1.08999 * 110.36599 * 85.25554 * 7 6 4 38 38 H 1.09002 * 110.36605 * 322.93177 * 7 6 4 39 39 H 1.08992 * 111.00177 * 81.06169 * 8 7 6 40 40 H 1.08997 * 110.99846 * 204.87942 * 8 7 6 41 41 H 1.09003 * 110.71563 * 153.86658 * 9 8 7 42 42 H 1.08996 * 110.72051 * 276.95999 * 9 8 7 43 43 H 1.08998 * 109.46908 * 84.58680 * 15 14 12 44 44 H 1.08998 * 109.47123 * 204.58622 * 15 14 12 45 45 H 1.08996 * 109.47365 * 324.58291 * 15 14 12 46 46 H 1.08998 * 109.46703 * 210.00270 * 16 14 12 47 47 H 1.09004 * 109.46881 * 330.00201 * 16 14 12 48 48 H 0.96702 * 114.00129 * 59.99153 * 19 17 16 49 49 H 1.09001 * 109.47298 * 299.99641 * 20 17 16 50 50 H 1.09009 * 109.47530 * 59.99768 * 20 17 16 51 51 H 0.97001 * 119.99447 * 359.97438 * 21 20 17 52 52 H 0.97001 * 120.00288 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2208 2.6097 -0.0002 7 6 3.6129 3.9528 0.0014 8 6 4.6943 4.8783 -0.6101 9 6 5.9949 4.2658 -0.0261 10 6 5.6839 2.7545 -0.0002 11 1 6.1008 2.3055 0.9013 12 6 6.2678 2.0901 -1.2204 13 8 5.5869 1.9381 -2.2125 14 7 7.5467 1.6650 -1.2092 15 6 8.3379 1.7551 0.0205 16 6 8.1457 1.1127 -2.4268 17 6 8.7961 2.2396 -3.2316 18 1 8.0598 3.0198 -3.4248 19 8 9.8870 2.7875 -2.4887 20 6 9.3120 1.6849 -4.5609 21 7 9.9354 2.7638 -5.3314 22 6 10.4728 2.5031 -6.5636 23 1 10.4376 1.5019 -6.9673 24 6 11.0640 3.5253 -7.2934 25 7 11.1074 4.7452 -6.8012 26 14 11.7965 3.1698 -8.9745 27 1 11.6198 1.7311 -9.2973 28 1 11.1084 3.9956 -9.9991 29 1 13.2443 3.4999 -8.9635 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6766 1.9563 -0.8899 37 1 3.3803 4.2627 1.0202 38 1 2.7131 3.9627 -0.6139 39 1 4.6891 4.8192 -1.6984 40 1 4.5621 5.9073 -0.2761 41 1 6.8447 4.4737 -0.6763 42 1 6.1800 4.6414 0.9802 43 1 8.1447 0.8806 0.6417 44 1 9.3976 1.7950 -0.2314 45 1 8.0600 2.6569 0.5660 46 1 8.9019 0.3753 -2.1574 47 1 7.3717 0.6362 -3.0286 48 1 10.5817 2.1478 -2.2805 49 1 10.0482 0.9047 -4.3678 50 1 8.4799 1.2670 -5.1277 51 1 9.9673 3.6629 -4.9687 52 1 11.5201 5.4596 -7.3113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677138159.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:01 Heat of formation + Delta-G solvation = -138.773855 kcal Electronic energy + Delta-G solvation = -31202.158854 eV Core-core repulsion = 27007.752998 eV Total energy + Delta-G solvation = -4194.405856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.93363 -40.38132 -38.98926 -38.11665 -36.46626 -35.83105 -35.33915 -33.30191 -32.83341 -31.63541 -30.26321 -28.70040 -27.91827 -26.92767 -25.15745 -24.43750 -22.90647 -22.73697 -22.44499 -20.84354 -19.73118 -19.28394 -18.58665 -18.20644 -17.81362 -17.07926 -17.03695 -16.81986 -16.45775 -16.33372 -16.07671 -15.75338 -15.29503 -14.97598 -14.92072 -14.58263 -14.45849 -14.24645 -14.22251 -13.86665 -13.76403 -13.71754 -13.57609 -13.29399 -13.01437 -12.92145 -12.82443 -12.74599 -12.64123 -12.35877 -12.25940 -12.19771 -12.07539 -12.02920 -11.98492 -11.86914 -11.67221 -11.28247 -11.03486 -10.96091 -10.90317 -9.72346 -9.60230 -9.06110 -7.98107 -5.28589 1.42033 1.44310 1.46156 1.55228 1.56537 1.86038 2.12010 2.52684 3.31858 3.33342 3.41416 3.45736 3.56316 3.71827 3.76527 3.93485 3.95540 3.98359 4.06607 4.11932 4.21359 4.27438 4.40068 4.44019 4.47788 4.51446 4.59774 4.63202 4.65953 4.71680 4.72664 4.78359 4.83688 4.84509 4.88663 4.91436 5.00380 5.13358 5.18092 5.19635 5.23397 5.26823 5.42204 5.42972 5.46690 6.22476 6.29180 6.44914 6.83790 7.05770 7.15115 7.29058 8.03219 8.28054 9.25438 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.002326 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.965669 B =12036.019221 C =12378.816495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.125 4.125 4 C 0.518 3.482 5 O -0.586 6.586 6 N -0.608 5.608 7 C 0.098 3.902 8 C -0.133 4.133 9 C -0.115 4.115 10 C 0.118 3.882 11 H 0.108 0.892 12 C 0.500 3.500 13 O -0.580 6.580 14 N -0.607 5.607 15 C 0.074 3.926 16 C 0.097 3.903 17 C 0.112 3.888 18 H 0.064 0.936 19 O -0.556 6.556 20 C 0.124 3.876 21 N -0.739 5.739 22 C -0.250 4.250 23 H 0.076 0.924 24 C -0.077 4.077 25 N -0.968 5.968 26 Si 0.978 3.022 27 H -0.266 1.266 28 H -0.293 1.293 29 H -0.289 1.289 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.123 0.877 41 H 0.071 0.929 42 H 0.128 0.872 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.112 0.888 47 H 0.067 0.933 48 H 0.384 0.616 49 H 0.040 0.960 50 H 0.017 0.983 51 H 0.375 0.625 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.134 -2.385 25.144 31.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.164 4.164 4 C 0.310 3.690 5 O -0.466 6.466 6 N -0.341 5.341 7 C -0.023 4.023 8 C -0.171 4.171 9 C -0.153 4.153 10 C 0.010 3.990 11 H 0.126 0.874 12 C 0.288 3.712 13 O -0.459 6.459 14 N -0.339 5.339 15 C -0.068 4.068 16 C -0.027 4.027 17 C 0.051 3.949 18 H 0.082 0.918 19 O -0.363 6.363 20 C -0.004 4.004 21 N -0.382 5.382 22 C -0.381 4.381 23 H 0.094 0.906 24 C -0.269 4.269 25 N -0.619 5.619 26 Si 0.807 3.193 27 H -0.190 1.190 28 H -0.220 1.220 29 H -0.216 1.216 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.145 0.855 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.141 0.859 41 H 0.089 0.911 42 H 0.147 0.853 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.105 0.895 46 H 0.130 0.870 47 H 0.085 0.915 48 H 0.233 0.767 49 H 0.058 0.942 50 H 0.035 0.965 51 H 0.207 0.793 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.542 -2.691 24.467 30.817 hybrid contribution 1.062 -0.485 -1.447 1.859 sum -17.480 -3.176 23.020 29.079 Atomic orbital electron populations 1.21739 0.93153 1.02472 1.02875 1.21261 0.97116 0.94767 1.01651 1.21730 0.88193 1.00241 1.06249 1.21260 0.91804 0.81658 0.74314 1.90676 1.71650 1.32468 1.51777 1.48557 1.05285 1.07492 1.72801 1.22699 0.97047 0.79259 1.03287 1.22842 0.93313 1.01002 0.99933 1.22680 0.99103 0.88672 1.04882 1.21705 0.82889 0.99010 0.95376 0.87393 1.21574 0.81640 0.77776 0.90242 1.90655 1.60756 1.57490 1.37034 1.47793 1.11814 1.61819 1.12452 1.22100 0.97197 1.02799 0.84657 1.21987 0.98563 0.95529 0.86665 1.22069 0.88140 0.95343 0.89307 0.91831 1.86567 1.33075 1.41547 1.75070 1.21400 0.95533 0.91580 0.91854 1.42419 1.69438 1.08046 1.18286 1.19690 1.29046 0.94929 0.94478 0.90641 1.25657 1.02908 0.95422 1.02948 1.69853 1.51243 1.01000 1.39777 0.85006 0.77421 0.77713 0.79183 1.19034 1.21991 1.21577 0.92128 0.92325 0.90849 0.94235 0.92317 0.85515 0.87844 0.87054 0.89267 0.93339 0.85894 0.91070 0.85350 0.91644 0.88860 0.89542 0.86982 0.91454 0.76667 0.94191 0.96467 0.79255 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.96 16 2 C -0.11 -1.97 5.22 30.59 0.16 -1.81 16 3 C -0.12 -1.97 4.71 29.85 0.14 -1.83 16 4 C 0.52 13.02 7.33 87.66 0.64 13.66 16 5 O -0.59 -20.26 15.73 -3.04 -0.05 -20.31 16 6 N -0.61 -12.67 2.79 -792.15 -2.21 -14.89 16 7 C 0.10 1.15 6.69 86.86 0.58 1.73 16 8 C -0.13 -1.82 7.09 31.99 0.23 -1.59 16 9 C -0.12 -1.73 5.96 31.78 0.19 -1.54 16 10 C 0.12 2.53 2.39 44.59 0.11 2.64 16 11 H 0.11 1.98 6.82 -2.39 -0.02 1.97 16 12 C 0.50 15.52 5.92 87.66 0.52 16.04 16 13 O -0.58 -23.69 15.88 -3.04 -0.05 -23.74 16 14 N -0.61 -16.31 2.84 -846.75 -2.40 -18.72 16 15 C 0.07 1.27 9.58 127.77 1.22 2.50 16 16 C 0.10 2.85 5.08 86.38 0.44 3.29 16 17 C 0.11 3.98 3.30 30.59 0.10 4.08 16 18 H 0.06 2.70 8.14 -2.38 -0.02 2.68 16 19 O -0.56 -18.10 12.01 -148.98 -1.79 -19.89 16 20 C 0.12 5.24 5.92 86.38 0.51 5.76 16 21 N -0.74 -40.01 5.49 -343.43 -1.89 -41.90 16 22 C -0.25 -14.62 9.99 84.04 0.84 -13.78 16 23 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 24 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 25 N -0.97 -61.53 13.06 21.65 0.28 -61.25 16 26 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 28 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 29 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.04 0.93 8.10 -2.38 -0.02 0.91 16 34 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 35 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.10 1.44 7.85 -2.39 -0.02 1.42 16 37 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.09 0.89 7.48 -2.39 -0.02 0.87 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 1.39 7.82 -2.39 -0.02 1.37 16 42 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 1.40 7.23 -2.39 -0.02 1.38 16 45 H 0.09 1.15 6.30 -2.39 -0.02 1.13 16 46 H 0.11 2.55 8.07 -2.39 -0.02 2.53 16 47 H 0.07 2.35 7.36 -2.39 -0.02 2.33 16 48 H 0.38 9.51 9.04 -74.06 -0.67 8.84 16 49 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 51 H 0.38 22.01 7.54 -92.71 -0.70 21.31 16 52 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -89.31 418.80 0.33 -88.98 By element: Atomic # 1 Polarization: 38.53 SS G_CDS: -0.45 Total: 38.08 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 6.86 Total: 24.04 kcal Atomic # 7 Polarization: -130.53 SS G_CDS: -6.22 Total: -136.75 kcal Atomic # 8 Polarization: -62.05 SS G_CDS: -1.89 Total: -63.94 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -89.31 0.33 -88.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677138159.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.789 kcal (2) G-P(sol) polarization free energy of solvation -89.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds