Wall clock time and date at job start Wed Apr 1 2020 00:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47362 * 2 1 4 4 H 1.09002 * 109.46477 * 54.99891 * 3 2 1 5 5 C 1.52997 * 109.47011 * 174.99828 * 3 2 1 6 6 O 1.42894 * 109.46905 * 295.00058 * 3 2 1 7 7 C 1.42905 * 114.00031 * 149.99863 * 6 3 2 8 8 C 1.50698 * 109.47502 * 179.97438 * 7 6 3 9 9 O 1.21286 * 119.99693 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00071 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.49847 * 324.91449 * 11 10 8 13 13 C 1.53111 * 109.50654 * 84.99511 * 11 10 8 14 14 C 1.53120 * 109.16356 * 177.63792 * 13 11 10 15 15 C 1.53044 * 109.27534 * 302.34527 * 14 13 11 16 16 N 1.46843 * 109.52215 * 59.18061 * 15 14 13 17 17 C 1.46898 * 110.99911 * 174.16129 * 16 15 14 18 18 C 1.50696 * 109.47176 * 66.04283 * 17 16 15 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31414 * 119.99692 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00158 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46896 * 89.99806 * 25 23 21 27 27 H 1.48499 * 109.47039 * 209.99966 * 25 23 21 28 28 H 1.48502 * 109.46906 * 329.99872 * 25 23 21 29 29 C 1.46852 * 111.19972 * 298.25561 * 16 15 14 30 30 H 1.08993 * 109.47003 * 299.99936 * 1 2 3 31 31 H 1.09004 * 109.46905 * 59.99821 * 1 2 3 32 32 H 1.08999 * 109.46973 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47027 * 240.00011 * 2 1 3 34 34 H 1.09004 * 109.46905 * 120.00179 * 2 1 3 35 35 H 1.08992 * 109.47227 * 60.00189 * 5 3 2 36 36 H 1.09008 * 109.46734 * 180.02562 * 5 3 2 37 37 H 1.09002 * 109.47319 * 300.00124 * 5 3 2 38 38 H 1.09003 * 109.46885 * 59.99066 * 7 6 3 39 39 H 1.09004 * 109.46744 * 300.00023 * 7 6 3 40 40 H 0.97004 * 120.00305 * 359.97438 * 10 8 7 41 41 H 1.09002 * 109.52619 * 57.72873 * 13 11 10 42 42 H 1.09002 * 109.52566 * 297.54125 * 13 11 10 43 43 H 1.08995 * 109.50413 * 182.40884 * 14 13 11 44 44 H 1.08996 * 109.50302 * 62.28319 * 14 13 11 45 45 H 1.09002 * 109.46309 * 299.16288 * 15 14 13 46 46 H 1.08999 * 109.45793 * 179.19306 * 15 14 13 47 47 H 1.09000 * 109.46741 * 306.04225 * 17 16 15 48 48 H 1.09002 * 109.46898 * 186.04215 * 17 16 15 49 49 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 50 50 H 0.96995 * 119.99830 * 180.02562 * 24 23 21 51 51 H 1.08993 * 109.46650 * 181.76015 * 29 16 15 52 52 H 1.09003 * 109.45929 * 301.73297 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4442 0.1258 6 8 1.6620 2.0813 -1.2210 7 6 1.4560 3.4903 -1.1003 8 6 1.0639 4.0574 -2.4403 9 8 0.9697 3.3268 -3.4038 10 7 0.8180 5.3762 -2.5681 11 6 0.4363 5.9274 -3.8707 12 1 0.9613 5.3906 -4.6609 13 6 -1.0747 5.7765 -4.0668 14 6 -1.4736 6.4076 -5.4036 15 6 -1.0471 7.8774 -5.4157 16 7 0.4061 7.9682 -5.2253 17 6 0.8703 9.3545 -5.3693 18 6 0.3088 10.1912 -4.2487 19 8 -0.4071 9.6826 -3.4121 20 7 0.6031 11.5044 -4.1756 21 6 0.0919 12.2657 -3.1564 22 1 -0.5462 11.8131 -2.4120 23 6 0.3999 13.6184 -3.0778 24 7 -0.0897 14.3481 -2.1006 25 14 1.5100 14.3997 -4.3611 26 1 0.6846 14.9072 -5.4865 27 1 2.2582 15.5266 -3.7484 28 1 2.4695 13.3863 -4.8686 29 6 0.8075 7.4111 -3.9272 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9994 0.9052 -0.7160 36 1 3.9281 2.4720 0.1262 37 1 3.8532 0.9569 1.0572 38 1 2.3769 3.9644 -0.7608 39 1 0.6618 3.6807 -0.3783 40 1 0.8929 5.9605 -1.7974 41 1 -1.5996 6.2803 -3.2551 42 1 -1.3377 4.7187 -4.0706 43 1 -2.5542 6.3413 -5.5293 44 1 -0.9787 5.8784 -6.2179 45 1 -1.5529 8.4090 -4.6097 46 1 -1.3168 8.3259 -6.3718 47 1 0.5317 9.7535 -6.3255 48 1 1.9593 9.3789 -5.3304 49 1 1.1760 11.9110 -4.8445 50 1 0.1250 15.2924 -2.0460 51 1 1.8846 7.5210 -3.8022 52 1 0.2929 7.9448 -3.1282 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690036305.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:23 Heat of formation + Delta-G solvation = -119.569745 kcal Electronic energy + Delta-G solvation = -30396.411650 eV Core-core repulsion = 26202.838547 eV Total energy + Delta-G solvation = -4193.573103 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.22604 -39.40839 -38.44446 -37.31558 -34.74383 -34.05699 -33.96756 -32.53401 -31.78307 -30.34462 -29.92974 -27.77064 -27.30083 -24.64151 -23.98833 -22.74851 -22.60529 -21.35481 -20.50966 -19.88168 -19.47959 -18.30973 -17.41199 -17.28168 -16.22796 -16.09233 -16.01491 -15.36043 -14.95777 -14.88311 -14.64472 -14.46607 -14.23371 -14.16144 -13.74177 -13.70292 -13.54373 -13.42088 -13.06644 -13.00391 -12.84520 -12.52131 -12.33662 -12.23984 -11.94620 -11.92009 -11.66514 -11.44241 -11.32461 -11.28622 -10.95953 -10.87823 -10.69970 -10.64119 -10.58593 -10.32235 -10.10269 -9.91475 -9.75627 -9.60287 -9.38128 -9.01396 -8.28182 -7.56513 -6.42565 -3.93969 2.56686 2.65686 2.95457 3.00057 3.08852 3.57146 3.71365 4.00876 4.27095 4.41489 4.57752 4.61813 4.66052 4.77465 4.86033 4.92883 5.00528 5.02070 5.09054 5.12103 5.20412 5.22227 5.29970 5.34232 5.35136 5.61660 5.64868 5.67091 5.71455 5.73643 5.77489 5.80262 5.84270 5.84933 5.88508 6.04464 6.09456 6.13355 6.23099 6.32924 6.42241 6.49432 6.63874 6.84656 7.20183 7.32447 7.45007 7.48894 8.03331 8.19385 8.46153 8.82783 9.30710 9.68454 10.70039 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016363 B = 0.002081 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.798002 B =13454.943830 C =14344.265852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.082 3.918 4 H 0.062 0.938 5 C -0.177 4.177 6 O -0.354 6.354 7 C 0.043 3.957 8 C 0.515 3.485 9 O -0.521 6.521 10 N -0.722 5.722 11 C 0.154 3.846 12 H 0.090 0.910 13 C -0.128 4.128 14 C -0.109 4.109 15 C 0.038 3.962 16 N -0.509 5.509 17 C 0.040 3.960 18 C 0.414 3.586 19 O -0.577 6.577 20 N -0.582 5.582 21 C -0.308 4.308 22 H 0.119 0.881 23 C 0.043 3.957 24 N -0.877 5.877 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.268 1.268 29 C 0.027 3.973 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.401 0.599 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.372 0.628 50 H 0.275 0.725 51 H 0.067 0.933 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.700 -21.134 1.250 21.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C 0.024 3.976 4 H 0.080 0.920 5 C -0.234 4.234 6 O -0.272 6.272 7 C -0.037 4.037 8 C 0.300 3.700 9 O -0.396 6.396 10 N -0.375 5.375 11 C 0.050 3.950 12 H 0.108 0.892 13 C -0.166 4.166 14 C -0.147 4.147 15 C -0.090 4.090 16 N -0.232 5.232 17 C -0.092 4.092 18 C 0.200 3.800 19 O -0.463 6.463 20 N -0.220 5.220 21 C -0.437 4.437 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.516 5.516 25 Si 0.706 3.294 26 H -0.195 1.195 27 H -0.201 1.201 28 H -0.194 1.194 29 C -0.101 4.101 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.235 0.765 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.110 0.890 48 H 0.109 0.891 49 H 0.205 0.795 50 H 0.085 0.915 51 H 0.086 0.914 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.345 -22.189 0.665 22.621 hybrid contribution 0.662 1.943 0.412 2.094 sum 5.007 -20.246 1.077 20.884 Atomic orbital electron populations 1.21746 0.95272 1.01707 1.02326 1.21622 0.96753 0.94618 1.02729 1.22239 0.94345 0.94223 0.86768 0.92015 1.22312 0.96037 1.02538 1.02551 1.88055 1.89385 1.17869 1.31926 1.22248 1.01550 0.84197 0.95718 1.20175 0.77388 0.82294 0.90155 1.90725 1.50416 1.58463 1.39982 1.45928 1.70623 1.08013 1.12932 1.20916 0.95282 0.94367 0.84454 0.89199 1.21925 0.95570 1.00823 0.98322 1.21482 1.00368 0.95683 0.97179 1.22301 0.88114 0.96484 1.02056 1.62329 1.14022 1.16126 1.30716 1.22097 1.00990 0.88001 0.98157 1.21055 0.86419 0.83102 0.89408 1.90416 1.41395 1.71032 1.43416 1.42418 1.44827 1.08530 1.26194 1.19439 1.28340 0.90828 1.05129 0.86347 1.25090 0.97741 0.96142 0.97149 1.69623 1.43662 1.07646 1.30703 0.86663 0.80911 0.80036 0.81767 1.19515 1.20098 1.19363 1.22584 1.00839 0.92989 0.93722 0.93066 0.91714 0.92709 0.90911 0.90726 0.91566 0.92383 0.91549 0.90390 0.90312 0.76481 0.91674 0.91867 0.91518 0.91512 0.91199 0.91445 0.88989 0.89109 0.79549 0.91490 0.91440 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.81 37.16 0.36 -0.82 16 2 C -0.12 -0.88 5.64 -26.73 -0.15 -1.04 16 3 C 0.08 0.66 2.72 -26.73 -0.07 0.59 16 4 H 0.06 0.41 7.79 -51.93 -0.40 0.01 16 5 C -0.18 -1.24 9.53 37.16 0.35 -0.88 16 6 O -0.35 -4.04 9.06 -55.14 -0.50 -4.53 16 7 C 0.04 0.42 6.23 36.00 0.22 0.64 16 8 C 0.52 6.71 7.87 -10.99 -0.09 6.62 16 9 O -0.52 -9.02 16.16 -14.36 -0.23 -9.25 16 10 N -0.72 -8.61 5.08 -53.73 -0.27 -8.88 16 11 C 0.15 2.14 2.61 -67.85 -0.18 1.96 16 12 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 13 C -0.13 -1.76 5.58 -26.61 -0.15 -1.91 16 14 C -0.11 -1.44 6.09 -26.65 -0.16 -1.60 16 15 C 0.04 0.58 5.09 -3.83 -0.02 0.56 16 16 N -0.51 -7.83 4.86 -236.11 -1.15 -8.98 16 17 C 0.04 0.62 5.86 -4.98 -0.03 0.59 16 18 C 0.41 8.61 7.20 -10.99 -0.08 8.53 16 19 O -0.58 -13.68 11.20 5.55 0.06 -13.62 16 20 N -0.58 -13.06 5.09 -10.96 -0.06 -13.12 16 21 C -0.31 -8.32 10.16 -14.93 -0.15 -8.47 16 22 H 0.12 3.66 7.39 -52.49 -0.39 3.28 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -24.82 13.96 55.50 0.77 -24.05 16 25 Si 0.88 18.71 27.73 -169.99 -4.71 13.99 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 27 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 28 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 29 C 0.03 0.41 4.45 -3.83 -0.02 0.39 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.40 7.87 -51.92 -0.41 -0.01 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 39 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 40 H 0.40 3.94 8.60 -40.82 -0.35 3.59 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.07 1.29 6.00 -51.93 -0.31 0.98 16 46 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 47 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 48 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 49 H 0.37 7.38 5.76 -40.82 -0.24 7.14 16 50 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 51 H 0.07 0.99 8.12 -51.93 -0.42 0.56 16 52 H 0.09 1.64 5.36 -51.93 -0.28 1.37 16 LS Contribution 410.47 15.07 6.19 6.19 Total: -1.00 -32.95 410.47 -9.23 -42.18 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -9.08 Total: 13.87 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -0.25 Total: 6.20 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.70 Total: -55.02 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.67 Total: -27.41 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.71 Total: 13.99 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.95 -9.23 -42.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690036305.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.392 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds