Wall clock time and date at job start Wed Apr 1 2020 00:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47362 * 2 1 4 4 H 1.09002 * 109.46477 * 54.99891 * 3 2 1 5 5 C 1.52997 * 109.47011 * 174.99828 * 3 2 1 6 6 O 1.42894 * 109.46905 * 295.00058 * 3 2 1 7 7 C 1.42905 * 114.00031 * 149.99863 * 6 3 2 8 8 C 1.50698 * 109.47502 * 179.97438 * 7 6 3 9 9 O 1.21286 * 119.99693 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00071 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.49847 * 324.91449 * 11 10 8 13 13 C 1.53111 * 109.50654 * 84.99511 * 11 10 8 14 14 C 1.53120 * 109.16356 * 177.63792 * 13 11 10 15 15 C 1.53044 * 109.27534 * 302.34527 * 14 13 11 16 16 N 1.46843 * 109.52215 * 59.18061 * 15 14 13 17 17 C 1.46898 * 110.99911 * 174.16129 * 16 15 14 18 18 C 1.50696 * 109.47176 * 66.04283 * 17 16 15 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31414 * 119.99692 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00158 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46896 * 89.99806 * 25 23 21 27 27 H 1.48499 * 109.47039 * 209.99966 * 25 23 21 28 28 H 1.48502 * 109.46906 * 329.99872 * 25 23 21 29 29 C 1.46852 * 111.19972 * 298.25561 * 16 15 14 30 30 H 1.08993 * 109.47003 * 299.99936 * 1 2 3 31 31 H 1.09004 * 109.46905 * 59.99821 * 1 2 3 32 32 H 1.08999 * 109.46973 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47027 * 240.00011 * 2 1 3 34 34 H 1.09004 * 109.46905 * 120.00179 * 2 1 3 35 35 H 1.08992 * 109.47227 * 60.00189 * 5 3 2 36 36 H 1.09008 * 109.46734 * 180.02562 * 5 3 2 37 37 H 1.09002 * 109.47319 * 300.00124 * 5 3 2 38 38 H 1.09003 * 109.46885 * 59.99066 * 7 6 3 39 39 H 1.09004 * 109.46744 * 300.00023 * 7 6 3 40 40 H 0.97004 * 120.00305 * 359.97438 * 10 8 7 41 41 H 1.09002 * 109.52619 * 57.72873 * 13 11 10 42 42 H 1.09002 * 109.52566 * 297.54125 * 13 11 10 43 43 H 1.08995 * 109.50413 * 182.40884 * 14 13 11 44 44 H 1.08996 * 109.50302 * 62.28319 * 14 13 11 45 45 H 1.09002 * 109.46309 * 299.16288 * 15 14 13 46 46 H 1.08999 * 109.45793 * 179.19306 * 15 14 13 47 47 H 1.09000 * 109.46741 * 306.04225 * 17 16 15 48 48 H 1.09002 * 109.46898 * 186.04215 * 17 16 15 49 49 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 50 50 H 0.96995 * 119.99830 * 180.02562 * 24 23 21 51 51 H 1.08993 * 109.46650 * 181.76015 * 29 16 15 52 52 H 1.09003 * 109.45929 * 301.73297 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4442 0.1258 6 8 1.6620 2.0813 -1.2210 7 6 1.4560 3.4903 -1.1003 8 6 1.0639 4.0574 -2.4403 9 8 0.9697 3.3268 -3.4038 10 7 0.8180 5.3762 -2.5681 11 6 0.4363 5.9274 -3.8707 12 1 0.9613 5.3906 -4.6609 13 6 -1.0747 5.7765 -4.0668 14 6 -1.4736 6.4076 -5.4036 15 6 -1.0471 7.8774 -5.4157 16 7 0.4061 7.9682 -5.2253 17 6 0.8703 9.3545 -5.3693 18 6 0.3088 10.1912 -4.2487 19 8 -0.4071 9.6826 -3.4121 20 7 0.6031 11.5044 -4.1756 21 6 0.0919 12.2657 -3.1564 22 1 -0.5462 11.8131 -2.4120 23 6 0.3999 13.6184 -3.0778 24 7 -0.0897 14.3481 -2.1006 25 14 1.5100 14.3997 -4.3611 26 1 0.6846 14.9072 -5.4865 27 1 2.2582 15.5266 -3.7484 28 1 2.4695 13.3863 -4.8686 29 6 0.8075 7.4111 -3.9272 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9994 0.9052 -0.7160 36 1 3.9281 2.4720 0.1262 37 1 3.8532 0.9569 1.0572 38 1 2.3769 3.9644 -0.7608 39 1 0.6618 3.6807 -0.3783 40 1 0.8929 5.9605 -1.7974 41 1 -1.5996 6.2803 -3.2551 42 1 -1.3377 4.7187 -4.0706 43 1 -2.5542 6.3413 -5.5293 44 1 -0.9787 5.8784 -6.2179 45 1 -1.5529 8.4090 -4.6097 46 1 -1.3168 8.3259 -6.3718 47 1 0.5317 9.7535 -6.3255 48 1 1.9593 9.3789 -5.3304 49 1 1.1760 11.9110 -4.8445 50 1 0.1250 15.2924 -2.0460 51 1 1.8846 7.5210 -3.8022 52 1 0.2929 7.9448 -3.1282 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690036305.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:22 Heat of formation + Delta-G solvation = -144.453628 kcal Electronic energy + Delta-G solvation = -30397.490696 eV Core-core repulsion = 26202.838547 eV Total energy + Delta-G solvation = -4194.652149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.42638 -40.69642 -39.38182 -38.64434 -36.19588 -35.55842 -34.73332 -33.86334 -33.63250 -31.25184 -30.71718 -29.11415 -28.32799 -26.38245 -24.60625 -24.05641 -23.75116 -21.97943 -21.60292 -21.29816 -21.07800 -20.06460 -18.34791 -18.15827 -17.71118 -17.24439 -16.99098 -16.80111 -16.31134 -16.16171 -15.75515 -15.55962 -15.42467 -15.25485 -14.99326 -14.84230 -14.63943 -14.47052 -14.41472 -14.05943 -13.96459 -13.66638 -13.59952 -13.35591 -13.06174 -12.96277 -12.57437 -12.55193 -12.41963 -12.27152 -12.23186 -12.01482 -11.92371 -11.86813 -11.79727 -11.53332 -11.46922 -11.36411 -11.01056 -10.84116 -10.59804 -10.21836 -10.11289 -9.03975 -8.42453 -6.02235 1.30656 1.34741 1.43977 1.54864 1.75033 1.91538 2.22105 2.86136 2.96539 3.13785 3.15289 3.64027 3.81322 3.87512 3.93876 4.04421 4.06032 4.14887 4.18206 4.20402 4.24339 4.29453 4.42997 4.45590 4.52281 4.53592 4.64578 4.67111 4.72196 4.72595 4.82096 4.92775 4.95956 5.04167 5.05554 5.09791 5.13361 5.17893 5.20925 5.29311 5.35341 5.42927 5.44617 5.52727 5.89710 6.00587 6.04806 6.16444 6.52314 6.57264 6.87902 7.19081 7.39003 7.94050 8.74681 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016363 B = 0.002081 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.798002 B =13454.943830 C =14344.265852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.076 3.924 4 H 0.079 0.921 5 C -0.174 4.174 6 O -0.385 6.385 7 C 0.046 3.954 8 C 0.513 3.487 9 O -0.569 6.569 10 N -0.714 5.714 11 C 0.162 3.838 12 H 0.079 0.921 13 C -0.123 4.123 14 C -0.103 4.103 15 C 0.040 3.960 16 N -0.502 5.502 17 C 0.047 3.953 18 C 0.419 3.581 19 O -0.608 6.608 20 N -0.588 5.588 21 C -0.324 4.324 22 H 0.057 0.943 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.961 3.039 26 H -0.259 1.259 27 H -0.278 1.278 28 H -0.230 1.230 29 C 0.034 3.966 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.412 0.588 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.034 0.966 46 H 0.084 0.916 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.389 0.611 50 H 0.278 0.722 51 H 0.076 0.924 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.753 -21.730 -0.140 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.019 3.981 4 H 0.097 0.903 5 C -0.232 4.232 6 O -0.305 6.305 7 C -0.033 4.033 8 C 0.300 3.700 9 O -0.447 6.447 10 N -0.367 5.367 11 C 0.057 3.943 12 H 0.097 0.903 13 C -0.162 4.162 14 C -0.141 4.141 15 C -0.088 4.088 16 N -0.225 5.225 17 C -0.085 4.085 18 C 0.206 3.794 19 O -0.495 6.495 20 N -0.229 5.229 21 C -0.454 4.454 22 H 0.075 0.925 23 C -0.214 4.214 24 N -0.574 5.574 25 Si 0.782 3.218 26 H -0.184 1.184 27 H -0.203 1.203 28 H -0.153 1.153 29 C -0.094 4.094 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.248 0.752 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.102 0.898 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.224 0.776 50 H 0.088 0.912 51 H 0.095 0.905 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.403 -22.808 -0.712 23.700 hybrid contribution -0.081 1.982 0.934 2.192 sum 6.322 -20.826 0.222 21.766 Atomic orbital electron populations 1.21726 0.95681 1.01985 1.01500 1.21666 0.96382 0.94530 1.03156 1.22464 0.95122 0.94379 0.86164 0.90271 1.22300 0.95175 1.02704 1.03002 1.88027 1.89795 1.18635 1.34015 1.22319 1.03488 0.83814 0.93721 1.20830 0.76190 0.81960 0.91002 1.90698 1.52639 1.59515 1.41853 1.45857 1.69966 1.08150 1.12721 1.20718 0.95094 0.93343 0.85141 0.90322 1.21870 0.95468 1.00399 0.98482 1.21463 1.01380 0.94345 0.96931 1.22295 0.87680 0.97397 1.01442 1.62420 1.14022 1.15664 1.30348 1.22300 1.02501 0.86794 0.96907 1.22261 0.84616 0.82789 0.89712 1.90443 1.42324 1.71703 1.44983 1.42265 1.45867 1.08856 1.25885 1.18996 1.28780 0.91842 1.05742 0.92465 1.26108 0.99366 0.96174 0.99781 1.69801 1.45844 1.08233 1.33498 0.85406 0.78921 0.79280 0.78211 1.18368 1.20309 1.15318 1.22470 1.00925 0.93294 0.92716 0.92018 0.94303 0.91943 0.92339 0.88375 0.92878 0.92212 0.89586 0.87862 0.87898 0.75153 0.92790 0.92252 0.90148 0.90605 0.94800 0.89801 0.85903 0.86144 0.77568 0.91239 0.90514 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.81 71.98 0.71 -1.52 16 2 C -0.12 -1.63 5.64 30.59 0.17 -1.46 16 3 C 0.08 1.11 2.72 30.59 0.08 1.19 16 4 H 0.08 0.87 7.79 -2.39 -0.02 0.85 16 5 C -0.17 -2.14 9.53 71.98 0.69 -1.46 16 6 O -0.39 -8.54 9.06 -129.94 -1.18 -9.72 16 7 C 0.05 0.83 6.23 71.24 0.44 1.27 16 8 C 0.51 13.18 7.87 87.66 0.69 13.87 16 9 O -0.57 -19.96 16.16 15.99 0.26 -19.70 16 10 N -0.71 -16.70 5.08 -442.29 -2.25 -18.95 16 11 C 0.16 4.43 2.61 45.04 0.12 4.54 16 12 H 0.08 2.39 7.58 -2.39 -0.02 2.37 16 13 C -0.12 -3.39 5.58 30.67 0.17 -3.22 16 14 C -0.10 -2.61 6.09 30.65 0.19 -2.43 16 15 C 0.04 1.16 5.09 86.33 0.44 1.60 16 16 N -0.50 -14.45 4.86 -900.92 -4.38 -18.83 16 17 C 0.05 1.33 5.86 85.56 0.50 1.83 16 18 C 0.42 17.13 7.20 87.66 0.63 17.76 16 19 O -0.61 -29.67 11.20 -3.05 -0.03 -29.71 16 20 N -0.59 -25.93 5.09 -306.99 -1.56 -27.49 16 21 C -0.32 -18.07 10.16 84.04 0.85 -17.22 16 22 H 0.06 3.81 7.39 -2.92 -0.02 3.79 16 23 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 24 N -0.93 -54.80 13.96 21.66 0.30 -54.50 16 25 Si 0.96 37.54 27.73 68.60 1.90 39.44 16 26 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 27 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 28 H -0.23 -7.48 6.52 99.48 0.65 -6.83 16 29 C 0.03 1.02 4.45 86.33 0.38 1.40 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.04 0.77 7.82 -2.38 -0.02 0.75 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 34 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.70 7.87 -2.38 -0.02 0.69 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.10 1.32 7.87 -2.39 -0.02 1.31 16 39 H 0.10 1.34 8.09 -2.38 -0.02 1.32 16 40 H 0.41 7.83 8.60 -92.71 -0.80 7.03 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.03 1.26 6.00 -2.39 -0.01 1.24 16 46 H 0.08 2.18 8.06 -2.39 -0.02 2.16 16 47 H 0.12 2.85 8.06 -2.39 -0.02 2.83 16 48 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 49 H 0.39 14.27 5.76 -92.70 -0.53 13.74 16 50 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 51 H 0.08 2.11 8.12 -2.39 -0.02 2.09 16 52 H 0.06 2.26 5.36 -2.39 -0.01 2.25 16 Total: -1.00 -77.74 410.47 -0.87 -78.61 By element: Atomic # 1 Polarization: 45.52 SS G_CDS: -0.47 Total: 45.05 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 6.53 Total: 15.79 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -7.88 Total: -119.77 kcal Atomic # 8 Polarization: -58.17 SS G_CDS: -0.95 Total: -59.12 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 1.90 Total: 39.44 kcal Total: -77.74 -0.87 -78.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690036305.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.843 kcal (2) G-P(sol) polarization free energy of solvation -77.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds