Wall clock time and date at job start Wed Apr 1 2020 00:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47419 * 2 1 4 4 H 1.08995 * 110.35882 * 52.85369 * 3 2 1 5 5 O 1.43653 * 110.30456 * 290.71181 * 3 2 1 6 6 C 1.43244 * 109.96820 * 216.65360 * 5 3 2 7 7 C 1.54377 * 107.59046 * 1.71622 * 6 5 3 8 8 C 1.54949 * 110.31063 * 175.00312 * 3 2 1 9 9 H 1.09003 * 111.12587 * 37.39698 * 8 3 2 10 10 C 1.50700 * 111.12301 * 273.27518 * 8 3 2 11 11 O 1.21283 * 119.99803 * 0.02562 * 10 8 3 12 12 N 1.34777 * 119.99675 * 180.27882 * 10 8 3 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 8 14 14 C 1.52999 * 109.46992 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47306 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.47390 * 305.00007 * 15 14 13 17 17 C 1.53002 * 109.47241 * 184.99769 * 15 14 13 18 18 N 1.46905 * 109.47387 * 65.00001 * 15 14 13 19 19 C 1.46898 * 110.99969 * 205.00378 * 18 15 14 20 20 C 1.50706 * 109.46790 * 180.02562 * 19 18 15 21 21 O 1.21286 * 119.99986 * 359.97438 * 20 19 18 22 22 N 1.34778 * 119.99540 * 180.02562 * 20 19 18 23 23 C 1.37103 * 119.99187 * 179.97438 * 22 20 19 24 24 H 1.07993 * 120.00451 * 359.97438 * 23 22 20 25 25 C 1.38957 * 119.99257 * 179.97438 * 23 22 20 26 26 N 1.31411 * 119.99568 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 120.00193 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47050 * 90.00030 * 27 25 23 29 29 H 1.48502 * 109.46820 * 209.99939 * 27 25 23 30 30 H 1.48498 * 109.47278 * 330.00139 * 27 25 23 31 31 H 1.09009 * 109.46953 * 300.00085 * 1 2 3 32 32 H 1.09000 * 109.47421 * 59.99651 * 1 2 3 33 33 H 1.09000 * 109.47277 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.47420 * 239.99728 * 2 1 3 35 35 H 1.09000 * 109.47421 * 120.00348 * 2 1 3 36 36 H 1.09002 * 109.82549 * 121.23019 * 6 5 3 37 37 H 1.08998 * 109.83168 * 242.10943 * 6 5 3 38 38 H 1.08998 * 110.84776 * 263.16339 * 7 6 5 39 39 H 1.08999 * 110.84995 * 139.54634 * 7 6 5 40 40 H 0.97000 * 119.99894 * 359.71837 * 12 10 8 41 41 H 1.08995 * 109.47421 * 299.99467 * 13 12 10 42 42 H 1.09001 * 109.47621 * 60.00103 * 13 12 10 43 43 H 1.09009 * 109.47378 * 299.99899 * 14 13 12 44 44 H 1.08993 * 109.47209 * 59.99808 * 14 13 12 45 45 H 1.09003 * 109.47107 * 179.97438 * 17 15 14 46 46 H 1.08996 * 109.47315 * 299.99729 * 17 15 14 47 47 H 1.09004 * 109.46818 * 60.00261 * 17 15 14 48 48 H 1.00899 * 110.99799 * 328.95738 * 18 15 14 49 49 H 1.09000 * 109.47057 * 299.99408 * 19 18 15 50 50 H 1.08989 * 109.47456 * 59.99875 * 19 18 15 51 51 H 0.96995 * 120.00556 * 359.97438 * 22 20 19 52 52 H 0.97001 * 120.00035 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5847 2.0057 0.8145 5 8 1.7570 2.0713 -1.2602 6 6 2.8320 2.9456 -1.6230 7 6 3.9116 2.8383 -0.5247 8 6 3.5841 1.4669 0.1266 9 1 4.0371 0.6479 -0.4321 10 6 4.0111 1.4360 1.5715 11 8 3.1758 1.3969 2.4499 12 7 5.3212 1.4568 1.8875 13 6 5.7361 1.4328 3.2923 14 6 7.2636 1.4632 3.3735 15 6 7.6971 1.4375 4.8405 16 1 7.2170 2.2569 5.3757 17 6 9.2167 1.5934 4.9262 18 7 7.3012 0.1588 5.4458 19 6 7.1423 0.2917 6.9001 20 6 6.7374 -1.0371 7.4846 21 8 6.5948 -1.9998 6.7608 22 7 6.5329 -1.1553 8.8115 23 6 6.1640 -2.3641 9.3431 24 1 6.0370 -3.2213 8.6986 25 6 5.9537 -2.4861 10.7112 26 7 5.5996 -3.6446 11.2207 27 14 6.1741 -1.0036 11.8260 28 1 4.8845 -0.2768 11.9440 29 1 6.6119 -1.4563 13.1709 30 1 7.2011 -0.0990 11.2496 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.2492 2.6402 -2.5826 37 1 2.4688 3.9713 -1.6875 38 1 3.8093 3.6461 0.2000 39 1 4.9102 2.8318 -0.9615 40 1 5.9892 1.4876 1.1849 41 1 5.3273 2.3023 3.8069 42 1 5.3656 0.5233 3.7652 43 1 7.6723 0.5934 2.8590 44 1 7.6346 2.3725 2.9005 45 1 9.5255 1.5755 5.9714 46 1 9.6968 0.7740 4.3912 47 1 9.5105 2.5422 4.4771 48 1 6.4579 -0.1966 5.0209 49 1 8.0871 0.6094 7.3413 50 1 6.3732 1.0332 7.1154 51 1 6.6466 -0.3854 9.3903 52 1 5.4531 -3.7299 12.1758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690854423.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:07 Heat of formation + Delta-G solvation = -130.567258 kcal Electronic energy + Delta-G solvation = -29741.428190 eV Core-core repulsion = 25547.378199 eV Total energy + Delta-G solvation = -4194.049991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85449 -39.09665 -38.58142 -37.28784 -35.00476 -33.95061 -33.82371 -32.92896 -31.74721 -31.38418 -29.32034 -28.60124 -26.61742 -24.79595 -23.83919 -23.31015 -22.56126 -21.22323 -20.85973 -20.15930 -19.37142 -18.37501 -18.03627 -16.90716 -16.57284 -16.15131 -15.83836 -15.73676 -15.39521 -15.21909 -14.99648 -14.69419 -14.24789 -14.04630 -13.91247 -13.76704 -13.55218 -13.35411 -13.32581 -13.09378 -12.68026 -12.62955 -12.32021 -12.18336 -12.13044 -12.00014 -11.83716 -11.75234 -11.43138 -11.39821 -11.36207 -11.18124 -11.11268 -10.99875 -10.87989 -10.58425 -10.14745 -9.96087 -9.83810 -9.55835 -9.39582 -8.57087 -8.20249 -8.14507 -6.29534 -3.80836 2.27101 2.73603 3.03654 3.07961 3.15985 3.35481 3.75559 3.90293 4.05391 4.12003 4.18065 4.23307 4.48727 4.57208 4.68027 4.71685 4.78581 4.79690 4.89177 4.91066 5.01107 5.12449 5.22045 5.22505 5.25960 5.27542 5.30531 5.42479 5.45137 5.56850 5.58214 5.64711 5.66592 5.73126 5.77815 5.81112 5.85514 5.93646 5.94328 5.95617 6.07660 6.11328 6.24083 6.62552 7.09277 7.12540 7.55437 7.59917 7.87507 8.16137 8.61328 8.96550 9.44012 9.84224 10.83624 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.002044 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.125641 B =13698.688114 C =15264.371228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.101 3.899 4 H 0.087 0.913 5 O -0.376 6.376 6 C 0.053 3.947 7 C -0.145 4.145 8 C -0.146 4.146 9 H 0.114 0.886 10 C 0.523 3.477 11 O -0.528 6.528 12 N -0.725 5.725 13 C 0.111 3.889 14 C -0.132 4.132 15 C 0.086 3.914 16 H 0.045 0.955 17 C -0.139 4.139 18 N -0.666 5.666 19 C 0.047 3.953 20 C 0.450 3.550 21 O -0.564 6.564 22 N -0.591 5.591 23 C -0.304 4.304 24 H 0.120 0.880 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.880 3.120 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.269 1.269 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.401 0.599 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.350 0.650 49 H 0.087 0.913 50 H 0.045 0.955 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 18.191 -24.720 30.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C 0.044 3.956 4 H 0.105 0.895 5 O -0.296 6.296 6 C -0.024 4.024 7 C -0.182 4.182 8 C -0.168 4.168 9 H 0.132 0.868 10 C 0.309 3.691 11 O -0.404 6.404 12 N -0.377 5.377 13 C -0.012 4.012 14 C -0.170 4.170 15 C -0.024 4.024 16 H 0.063 0.937 17 C -0.197 4.197 18 N -0.301 5.301 19 C -0.086 4.086 20 C 0.236 3.764 21 O -0.446 6.446 22 N -0.230 5.230 23 C -0.433 4.433 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.521 5.521 27 Si 0.706 3.294 28 H -0.196 1.196 29 H -0.202 1.202 30 H -0.195 1.195 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.235 0.765 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.172 0.828 49 H 0.106 0.894 50 H 0.063 0.937 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.029 17.093 -24.441 29.825 hybrid contribution 0.016 1.628 1.009 1.915 sum 0.045 18.721 -23.432 29.992 Atomic orbital electron populations 1.21691 0.94936 1.01722 1.02199 1.21660 0.97301 0.94157 1.02747 1.22884 0.91007 0.95093 0.86644 0.89524 1.88448 1.42355 1.60483 1.38307 1.23079 0.87063 0.94826 0.97408 1.23107 1.00713 0.95933 0.98492 1.23087 0.99097 1.00289 0.94300 0.86821 1.20134 0.82519 0.76112 0.90364 1.90767 1.51285 1.48470 1.49859 1.45947 1.07155 1.75682 1.08947 1.21508 0.95002 1.02861 0.81850 1.21980 0.93851 1.03500 0.97706 1.21460 0.96784 0.91246 0.92957 0.93729 1.21790 0.94517 1.01068 1.02359 1.60196 1.41654 1.25484 1.02768 1.21762 1.01017 0.96400 0.89402 1.19709 0.84116 0.89871 0.82752 1.90563 1.55099 1.39749 1.59212 1.42208 1.62737 1.11606 1.06475 1.19434 1.42873 0.88362 0.92637 0.86284 1.25046 0.97522 0.96960 0.96694 1.69623 1.46071 1.23155 1.13288 0.86668 0.78813 0.82603 0.81291 1.19645 1.20168 1.19493 0.92575 0.92233 0.92614 0.91374 0.90252 0.90972 0.91110 0.89954 0.89157 0.76541 0.91417 0.90774 0.89936 0.90601 0.92430 0.91743 0.92845 0.82785 0.89449 0.93713 0.79709 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.85 37.15 0.37 -0.99 16 2 C -0.12 -1.14 5.66 -26.74 -0.15 -1.29 16 3 C 0.10 0.96 2.55 -25.70 -0.07 0.90 16 4 H 0.09 0.99 7.38 -51.93 -0.38 0.60 16 5 O -0.38 -3.56 10.81 -35.23 -0.38 -3.94 16 6 C 0.05 0.33 7.79 37.88 0.30 0.62 16 7 C -0.14 -0.76 6.49 -24.78 -0.16 -0.92 16 8 C -0.15 -1.09 2.90 -89.52 -0.26 -1.35 16 9 H 0.11 0.68 8.06 -51.93 -0.42 0.26 16 10 C 0.52 5.35 7.15 -10.98 -0.08 5.27 16 11 O -0.53 -7.78 15.72 5.55 0.09 -7.70 16 12 N -0.73 -5.82 5.56 -60.30 -0.33 -6.15 16 13 C 0.11 1.08 5.51 -4.04 -0.02 1.06 16 14 C -0.13 -1.07 4.92 -26.73 -0.13 -1.20 16 15 C 0.09 0.91 2.65 -67.71 -0.18 0.73 16 16 H 0.04 0.46 7.80 -51.93 -0.40 0.05 16 17 C -0.14 -1.36 9.41 37.16 0.35 -1.01 16 18 N -0.67 -9.98 5.93 -107.99 -0.64 -10.62 16 19 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 20 C 0.45 10.35 7.82 -10.98 -0.09 10.27 16 21 O -0.56 -15.36 15.78 5.55 0.09 -15.27 16 22 N -0.59 -14.29 5.09 -10.96 -0.06 -14.34 16 23 C -0.30 -8.74 10.16 -14.93 -0.15 -8.89 16 24 H 0.12 3.90 7.39 -52.49 -0.39 3.52 16 25 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 26 N -0.88 -26.04 13.96 55.50 0.77 -25.27 16 27 Si 0.88 19.60 27.74 -169.99 -4.71 14.89 16 28 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 29 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 30 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 31 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 32 H 0.06 0.54 7.99 -51.93 -0.42 0.12 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.48 8.03 -51.93 -0.42 0.06 16 39 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.40 1.95 8.47 -40.82 -0.35 1.60 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.92 6.42 -51.93 -0.33 0.59 16 43 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.35 5.59 6.17 -39.29 -0.24 5.35 16 49 H 0.09 1.30 7.44 -51.93 -0.39 0.92 16 50 H 0.04 0.66 8.05 -51.94 -0.42 0.24 16 51 H 0.37 7.85 5.76 -40.82 -0.24 7.62 16 52 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 418.06 15.07 6.30 6.30 Total: -1.00 -35.74 418.06 -8.29 -44.03 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -9.02 Total: 13.10 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -0.40 Total: 4.98 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.26 Total: -56.39 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.21 Total: -26.91 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.89 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.74 -8.29 -44.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690854423.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.535 kcal (2) G-P(sol) polarization free energy of solvation -35.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds