Wall clock time and date at job start Wed Apr 1 2020 00:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47419 * 2 1 4 4 H 1.08995 * 110.35882 * 52.85369 * 3 2 1 5 5 O 1.43653 * 110.30456 * 290.71181 * 3 2 1 6 6 C 1.43244 * 109.96820 * 216.65360 * 5 3 2 7 7 C 1.54377 * 107.59046 * 1.71622 * 6 5 3 8 8 C 1.54949 * 110.31063 * 175.00312 * 3 2 1 9 9 H 1.09003 * 111.12587 * 37.39698 * 8 3 2 10 10 C 1.50700 * 111.12301 * 273.27518 * 8 3 2 11 11 O 1.21283 * 119.99803 * 0.02562 * 10 8 3 12 12 N 1.34777 * 119.99675 * 180.27882 * 10 8 3 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 8 14 14 C 1.52999 * 109.46992 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47306 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.47390 * 305.00007 * 15 14 13 17 17 C 1.53002 * 109.47241 * 184.99769 * 15 14 13 18 18 N 1.46905 * 109.47387 * 65.00001 * 15 14 13 19 19 C 1.46898 * 110.99969 * 205.00378 * 18 15 14 20 20 C 1.50706 * 109.46790 * 180.02562 * 19 18 15 21 21 O 1.21286 * 119.99986 * 359.97438 * 20 19 18 22 22 N 1.34778 * 119.99540 * 180.02562 * 20 19 18 23 23 C 1.37103 * 119.99187 * 179.97438 * 22 20 19 24 24 H 1.07993 * 120.00451 * 359.97438 * 23 22 20 25 25 C 1.38957 * 119.99257 * 179.97438 * 23 22 20 26 26 N 1.31411 * 119.99568 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 120.00193 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47050 * 90.00030 * 27 25 23 29 29 H 1.48502 * 109.46820 * 209.99939 * 27 25 23 30 30 H 1.48498 * 109.47278 * 330.00139 * 27 25 23 31 31 H 1.09009 * 109.46953 * 300.00085 * 1 2 3 32 32 H 1.09000 * 109.47421 * 59.99651 * 1 2 3 33 33 H 1.09000 * 109.47277 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.47420 * 239.99728 * 2 1 3 35 35 H 1.09000 * 109.47421 * 120.00348 * 2 1 3 36 36 H 1.09002 * 109.82549 * 121.23019 * 6 5 3 37 37 H 1.08998 * 109.83168 * 242.10943 * 6 5 3 38 38 H 1.08998 * 110.84776 * 263.16339 * 7 6 5 39 39 H 1.08999 * 110.84995 * 139.54634 * 7 6 5 40 40 H 0.97000 * 119.99894 * 359.71837 * 12 10 8 41 41 H 1.08995 * 109.47421 * 299.99467 * 13 12 10 42 42 H 1.09001 * 109.47621 * 60.00103 * 13 12 10 43 43 H 1.09009 * 109.47378 * 299.99899 * 14 13 12 44 44 H 1.08993 * 109.47209 * 59.99808 * 14 13 12 45 45 H 1.09003 * 109.47107 * 179.97438 * 17 15 14 46 46 H 1.08996 * 109.47315 * 299.99729 * 17 15 14 47 47 H 1.09004 * 109.46818 * 60.00261 * 17 15 14 48 48 H 1.00899 * 110.99799 * 328.95738 * 18 15 14 49 49 H 1.09000 * 109.47057 * 299.99408 * 19 18 15 50 50 H 1.08989 * 109.47456 * 59.99875 * 19 18 15 51 51 H 0.96995 * 120.00556 * 359.97438 * 22 20 19 52 52 H 0.97001 * 120.00035 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5847 2.0057 0.8145 5 8 1.7570 2.0713 -1.2602 6 6 2.8320 2.9456 -1.6230 7 6 3.9116 2.8383 -0.5247 8 6 3.5841 1.4669 0.1266 9 1 4.0371 0.6479 -0.4321 10 6 4.0111 1.4360 1.5715 11 8 3.1758 1.3969 2.4499 12 7 5.3212 1.4568 1.8875 13 6 5.7361 1.4328 3.2923 14 6 7.2636 1.4632 3.3735 15 6 7.6971 1.4375 4.8405 16 1 7.2170 2.2569 5.3757 17 6 9.2167 1.5934 4.9262 18 7 7.3012 0.1588 5.4458 19 6 7.1423 0.2917 6.9001 20 6 6.7374 -1.0371 7.4846 21 8 6.5948 -1.9998 6.7608 22 7 6.5329 -1.1553 8.8115 23 6 6.1640 -2.3641 9.3431 24 1 6.0370 -3.2213 8.6986 25 6 5.9537 -2.4861 10.7112 26 7 5.5996 -3.6446 11.2207 27 14 6.1741 -1.0036 11.8260 28 1 4.8845 -0.2768 11.9440 29 1 6.6119 -1.4563 13.1709 30 1 7.2011 -0.0990 11.2496 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.2492 2.6402 -2.5826 37 1 2.4688 3.9713 -1.6875 38 1 3.8093 3.6461 0.2000 39 1 4.9102 2.8318 -0.9615 40 1 5.9892 1.4876 1.1849 41 1 5.3273 2.3023 3.8069 42 1 5.3656 0.5233 3.7652 43 1 7.6723 0.5934 2.8590 44 1 7.6346 2.3725 2.9005 45 1 9.5255 1.5755 5.9714 46 1 9.6968 0.7740 4.3912 47 1 9.5105 2.5422 4.4771 48 1 6.4579 -0.1966 5.0209 49 1 8.0871 0.6094 7.3413 50 1 6.3732 1.0332 7.1154 51 1 6.6466 -0.3854 9.3903 52 1 5.4531 -3.7299 12.1758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690854423.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:06 Heat of formation + Delta-G solvation = -160.118426 kcal Electronic energy + Delta-G solvation = -29742.709624 eV Core-core repulsion = 25547.378199 eV Total energy + Delta-G solvation = -4195.331426 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.57623 -40.40872 -39.73327 -38.39049 -36.12975 -35.77644 -34.54747 -33.80349 -33.58580 -32.49650 -30.04170 -29.25379 -28.22011 -25.86681 -25.21167 -24.04801 -23.22544 -21.91278 -21.65301 -21.34416 -20.93333 -20.28840 -18.76993 -17.86319 -17.55921 -17.23827 -16.94050 -16.83083 -16.57319 -16.32154 -15.99818 -15.70813 -15.55964 -15.05182 -14.89513 -14.73412 -14.64505 -14.41690 -14.38076 -14.17639 -13.98202 -13.93455 -13.41094 -13.27045 -13.16038 -12.92148 -12.73775 -12.58629 -12.46280 -12.43682 -12.26606 -12.18537 -11.98382 -11.95394 -11.81715 -11.76287 -11.64397 -11.53557 -10.97298 -10.48997 -10.45548 -10.27168 -10.19138 -9.33615 -8.43181 -6.04239 1.28297 1.33988 1.42939 1.48911 1.93104 2.02339 2.21355 2.71711 2.75170 3.12977 3.35491 3.39171 3.54318 3.65717 3.79769 3.94673 4.04866 4.10749 4.13201 4.14770 4.16667 4.21902 4.38265 4.39363 4.46007 4.48845 4.52476 4.59113 4.68282 4.76049 4.79196 4.84055 4.93589 4.97099 5.01475 5.04409 5.04982 5.05400 5.20176 5.21282 5.32174 5.36675 5.48549 5.51877 5.89759 6.01920 6.08184 6.38028 6.46216 6.57669 6.85748 7.16207 7.37263 7.93884 8.74528 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.002044 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.125641 B =13698.688114 C =15264.371228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.100 3.900 4 H 0.058 0.942 5 O -0.394 6.394 6 C 0.044 3.956 7 C -0.134 4.134 8 C -0.139 4.139 9 H 0.136 0.864 10 C 0.520 3.480 11 O -0.582 6.582 12 N -0.708 5.708 13 C 0.115 3.885 14 C -0.118 4.118 15 C 0.083 3.917 16 H 0.057 0.943 17 C -0.137 4.137 18 N -0.685 5.685 19 C 0.061 3.939 20 C 0.446 3.554 21 O -0.615 6.615 22 N -0.591 5.591 23 C -0.330 4.330 24 H 0.054 0.946 25 C -0.017 4.017 26 N -0.934 5.934 27 Si 0.966 3.034 28 H -0.258 1.258 29 H -0.273 1.273 30 H -0.230 1.230 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.126 0.874 40 H 0.420 0.580 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.083 0.917 48 H 0.341 0.659 49 H 0.114 0.886 50 H 0.073 0.927 51 H 0.390 0.610 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 22.194 -25.837 34.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C 0.042 3.958 4 H 0.076 0.924 5 O -0.315 6.315 6 C -0.032 4.032 7 C -0.172 4.172 8 C -0.160 4.160 9 H 0.154 0.846 10 C 0.307 3.693 11 O -0.462 6.462 12 N -0.361 5.361 13 C -0.010 4.010 14 C -0.156 4.156 15 C -0.026 4.026 16 H 0.075 0.925 17 C -0.194 4.194 18 N -0.319 5.319 19 C -0.071 4.071 20 C 0.235 3.765 21 O -0.499 6.499 22 N -0.233 5.233 23 C -0.459 4.459 24 H 0.072 0.928 25 C -0.215 4.215 26 N -0.574 5.574 27 Si 0.785 3.215 28 H -0.183 1.183 29 H -0.198 1.198 30 H -0.153 1.153 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.144 0.856 40 H 0.257 0.743 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.100 0.900 44 H 0.129 0.871 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.101 0.899 48 H 0.161 0.839 49 H 0.132 0.868 50 H 0.090 0.910 51 H 0.225 0.775 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.374 21.133 -25.609 33.287 hybrid contribution -0.720 0.297 1.233 1.458 sum 1.654 21.430 -24.376 32.499 Atomic orbital electron populations 1.21680 0.95046 1.02045 1.01667 1.21641 0.97326 0.94413 1.02496 1.22719 0.92474 0.94480 0.86103 0.92388 1.88425 1.44074 1.61131 1.37832 1.23341 0.86639 0.94733 0.98519 1.23132 1.02275 0.93910 0.97836 1.23062 0.97623 1.02670 0.92690 0.84617 1.20643 0.82599 0.75013 0.91076 1.90749 1.52821 1.51044 1.51574 1.45790 1.06988 1.74358 1.08957 1.21373 0.96277 1.00898 0.82420 1.21896 0.92107 1.05187 0.96387 1.21643 0.97573 0.89288 0.94142 0.92549 1.21787 0.93355 1.02279 1.02018 1.60250 1.41273 1.28509 1.01914 1.21684 1.02888 0.92218 0.90352 1.21043 0.81655 0.91834 0.82018 1.90537 1.56577 1.42443 1.60375 1.42041 1.63230 1.10643 1.07359 1.19006 1.45329 0.88725 0.92823 0.92776 1.26151 0.96038 1.01250 0.98080 1.69806 1.46974 1.26459 1.14194 0.85354 0.80293 0.77836 0.77976 1.18274 1.19811 1.15340 0.93730 0.92075 0.91860 0.90011 0.91890 0.88926 0.90512 0.90626 0.85598 0.74268 0.92026 0.94177 0.90035 0.87076 0.93247 0.92758 0.89866 0.83898 0.86766 0.90953 0.77475 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.85 71.98 0.71 -2.12 16 2 C -0.12 -2.35 5.66 30.59 0.17 -2.18 16 3 C 0.10 1.93 2.55 31.26 0.08 2.01 16 4 H 0.06 1.43 7.38 -2.39 -0.02 1.42 16 5 O -0.39 -7.17 10.81 -148.98 -1.61 -8.78 16 6 C 0.04 0.44 7.79 72.45 0.56 1.01 16 7 C -0.13 -1.05 6.49 31.86 0.21 -0.84 16 8 C -0.14 -1.90 2.90 -10.08 -0.03 -1.92 16 9 H 0.14 1.27 8.06 -2.39 -0.02 1.25 16 10 C 0.52 10.44 7.15 87.66 0.63 11.07 16 11 O -0.58 -18.02 15.72 -3.04 -0.05 -18.07 16 12 N -0.71 -10.18 5.56 -463.07 -2.57 -12.75 16 13 C 0.11 2.10 5.51 86.38 0.48 2.58 16 14 C -0.12 -1.56 4.92 30.59 0.15 -1.41 16 15 C 0.08 1.51 2.65 44.91 0.12 1.63 16 16 H 0.06 0.94 7.80 -2.39 -0.02 0.92 16 17 C -0.14 -2.17 9.41 71.98 0.68 -1.49 16 18 N -0.68 -19.74 5.93 -495.57 -2.94 -22.68 16 19 C 0.06 1.90 5.97 85.56 0.51 2.41 16 20 C 0.45 20.79 7.82 87.66 0.69 21.47 16 21 O -0.61 -35.12 15.78 -3.05 -0.05 -35.17 16 22 N -0.59 -28.67 5.09 -306.98 -1.56 -30.23 16 23 C -0.33 -19.80 10.16 84.04 0.85 -18.94 16 24 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 25 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 26 N -0.93 -57.30 13.96 21.67 0.30 -57.00 16 27 Si 0.97 39.53 27.74 68.60 1.90 41.43 16 28 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 29 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 30 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 31 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.06 1.14 7.99 -2.39 -0.02 1.12 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 0.72 8.03 -2.39 -0.02 0.70 16 39 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.42 2.72 8.47 -92.71 -0.79 1.94 16 41 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.04 1.03 6.42 -2.39 -0.02 1.02 16 43 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.05 0.87 7.45 -2.39 -0.02 0.85 16 46 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 48 H 0.34 11.00 6.17 -89.69 -0.55 10.44 16 49 H 0.11 3.00 7.44 -2.39 -0.02 2.99 16 50 H 0.07 1.90 8.05 -2.39 -0.02 1.88 16 51 H 0.39 15.62 5.76 -92.71 -0.53 15.09 16 52 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -86.93 418.06 -1.31 -88.24 By element: Atomic # 1 Polarization: 43.21 SS G_CDS: -1.00 Total: 42.21 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 6.27 Total: 12.80 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -6.77 Total: -122.66 kcal Atomic # 8 Polarization: -60.31 SS G_CDS: -1.71 Total: -62.02 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.90 Total: 41.43 kcal Total: -86.93 -1.31 -88.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690854423.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.882 kcal (2) G-P(sol) polarization free energy of solvation -86.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds