Wall clock time and date at job start Wed Apr 1 2020 00:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46854 * 2 1 4 4 H 1.08993 * 109.91066 * 306.32229 * 3 2 1 5 5 C 1.54002 * 109.91553 * 185.22154 * 3 2 1 6 6 H 1.09008 * 110.30778 * 358.33873 * 5 3 2 7 7 N 1.46501 * 110.30996 * 120.50273 * 5 3 2 8 8 C 1.34772 * 120.00070 * 202.17164 * 7 5 3 9 9 O 1.21276 * 119.99988 * 359.97438 * 8 7 5 10 10 C 1.50705 * 119.99945 * 180.02562 * 8 7 5 11 11 C 1.52996 * 109.47091 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47147 * 180.02562 * 11 10 8 13 13 O 1.42897 * 109.47354 * 180.02562 * 12 11 10 14 14 C 1.42889 * 114.00105 * 179.97438 * 13 12 11 15 15 C 1.54590 * 105.14101 * 239.42386 * 5 3 2 16 16 C 1.54937 * 103.08046 * 337.95339 * 15 5 3 17 17 N 1.47899 * 109.91846 * 67.63499 * 3 2 1 18 18 C 1.46898 * 110.99836 * 265.19377 * 17 3 2 19 19 C 1.50698 * 109.47140 * 183.59358 * 18 17 3 20 20 O 1.21298 * 120.00234 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00106 * 179.97438 * 19 18 17 22 22 C 1.37091 * 120.00116 * 179.97438 * 21 19 18 23 23 H 1.08006 * 119.99981 * 0.02562 * 22 21 19 24 24 C 1.38956 * 120.00237 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99536 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00140 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47093 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46924 * 120.00421 * 26 24 22 29 29 H 1.48498 * 109.47352 * 240.00057 * 26 24 22 30 30 H 1.08995 * 109.47227 * 172.73946 * 1 2 3 31 31 H 1.08998 * 109.46831 * 292.74158 * 1 2 3 32 32 H 1.09000 * 109.47064 * 52.73563 * 1 2 3 33 33 H 1.09002 * 109.47258 * 240.00348 * 2 1 3 34 34 H 1.09002 * 109.46866 * 119.99903 * 2 1 3 35 35 H 0.97002 * 119.99621 * 22.17208 * 7 5 3 36 36 H 1.09001 * 109.46922 * 300.00144 * 10 8 7 37 37 H 1.09002 * 109.46559 * 60.00049 * 10 8 7 38 38 H 1.09005 * 109.46760 * 299.99855 * 11 10 8 39 39 H 1.08993 * 109.47568 * 59.99892 * 11 10 8 40 40 H 1.09001 * 109.46660 * 299.99887 * 12 11 10 41 41 H 1.08993 * 109.47208 * 59.99385 * 12 11 10 42 42 H 1.08998 * 109.47050 * 299.99510 * 14 13 12 43 43 H 1.08999 * 109.47618 * 59.99513 * 14 13 12 44 44 H 1.09006 * 109.47273 * 179.97438 * 14 13 12 45 45 H 1.09004 * 110.72855 * 96.39913 * 15 5 3 46 46 H 1.09000 * 110.72593 * 219.50490 * 15 5 3 47 47 H 1.09004 * 110.66580 * 155.94081 * 16 15 5 48 48 H 1.09004 * 110.66883 * 279.06781 * 16 15 5 49 49 H 1.09000 * 109.47156 * 303.58825 * 18 17 3 50 50 H 1.09001 * 109.47285 * 63.59431 * 18 17 3 51 51 H 0.96999 * 119.99807 * 0.02562 * 21 19 18 52 52 H 0.97002 * 119.99947 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5914 1.9948 -0.8257 5 6 3.5743 1.4565 -0.1318 6 1 3.9603 0.4377 -0.1663 7 7 3.9748 2.1941 -1.3325 8 6 5.1812 1.9699 -1.8900 9 8 5.9354 1.1580 -1.3974 10 6 5.5934 2.7291 -3.1249 11 6 6.9958 2.2890 -3.5497 12 6 7.4145 3.0601 -4.8030 13 8 8.7241 2.6487 -5.2002 14 6 9.2125 3.3117 -6.3680 15 6 4.0819 2.1799 1.1366 16 6 2.8497 3.0042 1.5870 17 7 1.7090 2.0939 1.2859 18 6 0.4498 2.8439 1.1874 19 6 0.1910 3.5639 2.4857 20 8 0.9780 3.4620 3.4031 21 7 -0.9148 4.3212 2.6275 22 6 -1.1505 4.9759 3.8088 23 1 -0.4497 4.8851 4.6256 24 6 -2.2903 5.7571 3.9549 25 7 -3.1427 5.8679 2.9608 26 14 -2.6110 6.6496 5.5641 27 1 -1.5083 6.3640 6.5168 28 1 -2.6820 8.1116 5.3136 29 1 -3.8974 6.1833 6.1411 30 1 -0.3633 -1.0194 -0.1299 31 1 -0.3633 0.3973 0.9478 32 1 -0.3633 0.6222 -0.8179 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.3717 2.8438 -1.7263 36 1 4.8886 2.5228 -3.9304 37 1 5.5970 3.7977 -2.9100 38 1 7.7007 2.4950 -2.7443 39 1 6.9918 1.2204 -3.7646 40 1 6.7096 2.8545 -5.6086 41 1 7.4186 4.1286 -4.5878 42 1 8.5445 3.1112 -7.2057 43 1 9.2542 4.3855 -6.1855 44 1 10.2114 2.9443 -6.6034 45 1 4.3656 1.4597 1.9041 46 1 4.9186 2.8363 0.8976 47 1 2.9015 3.2218 2.6539 48 1 2.7704 3.9249 1.0089 49 1 0.5216 3.5698 0.3774 50 1 -0.3693 2.1537 0.9853 51 1 -1.5444 4.4024 1.8941 52 1 -3.9382 6.4135 3.0626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691951015.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:58 Heat of formation + Delta-G solvation = -122.880205 kcal Electronic energy + Delta-G solvation = -30072.141835 eV Core-core repulsion = 25878.425180 eV Total energy + Delta-G solvation = -4193.716655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.43951 -39.15346 -38.28035 -37.65047 -34.51842 -33.96724 -33.93265 -33.02480 -31.42140 -30.88890 -28.47050 -27.61257 -26.61663 -25.81536 -24.26000 -22.83039 -22.30102 -21.25132 -20.49308 -19.84273 -19.20930 -17.90115 -17.46406 -16.78174 -16.64161 -16.40805 -15.91365 -15.63616 -15.31516 -15.24528 -15.02797 -14.62721 -14.31472 -13.99306 -13.86008 -13.83106 -13.45276 -13.24821 -12.74012 -12.67862 -12.49939 -12.41463 -12.26091 -12.17266 -12.04881 -11.60891 -11.42499 -11.36120 -11.29866 -11.26950 -11.17363 -11.07439 -10.91191 -10.66940 -10.47953 -10.35588 -10.24845 -10.08511 -9.99103 -9.52550 -9.16918 -8.44225 -8.04382 -7.94081 -6.44448 -3.85072 2.45644 2.84529 3.14299 3.25270 3.32379 3.43633 3.87241 4.02260 4.23034 4.38843 4.47512 4.55397 4.68681 4.70753 4.87313 4.88857 4.98388 5.00026 5.01055 5.07031 5.11900 5.19989 5.21933 5.23474 5.27114 5.28474 5.41653 5.49921 5.65699 5.68302 5.73949 5.75092 5.83029 5.90300 5.96648 6.00887 6.02074 6.18710 6.23866 6.27963 6.42128 6.43577 6.61484 6.74478 7.16200 7.23661 7.31953 7.53087 8.03814 8.04693 8.58943 9.15779 9.51468 10.03194 10.73321 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.001927 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.363681 B =14526.254034 C =15353.538886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 C 0.059 3.941 4 H 0.055 0.945 5 C 0.137 3.863 6 H 0.098 0.902 7 N -0.724 5.724 8 C 0.514 3.486 9 O -0.537 6.537 10 C -0.139 4.139 11 C -0.104 4.104 12 C 0.061 3.939 13 O -0.391 6.391 14 C 0.031 3.969 15 C -0.132 4.132 16 C 0.040 3.960 17 N -0.483 5.483 18 C 0.032 3.968 19 C 0.443 3.557 20 O -0.578 6.578 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.398 0.602 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.112 0.888 48 H 0.035 0.965 49 H 0.045 0.955 50 H 0.096 0.904 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.054 -5.597 -18.984 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.142 4.142 3 C -0.051 4.051 4 H 0.073 0.927 5 C 0.032 3.968 6 H 0.116 0.884 7 N -0.376 5.376 8 C 0.300 3.700 9 O -0.413 6.413 10 C -0.179 4.179 11 C -0.142 4.142 12 C -0.016 4.016 13 O -0.310 6.310 14 C -0.065 4.065 15 C -0.171 4.171 16 C -0.087 4.087 17 N -0.208 5.208 18 C -0.100 4.100 19 C 0.229 3.771 20 O -0.462 6.462 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.122 0.878 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.233 0.767 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.130 0.870 48 H 0.053 0.947 49 H 0.063 0.937 50 H 0.114 0.886 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.968 -6.670 -17.491 23.968 hybrid contribution -1.223 1.872 -0.841 2.389 sum 13.745 -4.798 -18.332 23.409 Atomic orbital electron populations 1.21879 0.95614 1.01294 1.02417 1.21475 0.96290 0.94489 1.01976 1.22743 0.93063 0.97021 0.92239 0.92715 1.21881 0.93782 0.96874 0.84229 0.88392 1.46223 1.18133 1.43675 1.29538 1.20557 0.81314 0.82902 0.85208 1.90726 1.51654 1.35122 1.63792 1.21560 0.98490 1.01409 0.96449 1.21212 0.94903 1.01333 0.96737 1.22556 0.84235 0.98093 0.96722 1.87890 1.32421 1.65186 1.45536 1.22749 0.99782 0.96729 0.87267 1.22930 0.97854 0.99651 0.96666 1.23476 0.88171 0.92896 1.04137 1.64650 1.01637 1.28076 1.26438 1.22251 0.93842 0.96882 0.96993 1.19701 0.84134 0.83958 0.89337 1.90481 1.47333 1.66209 1.42207 1.41856 1.20324 1.42262 1.15592 1.19750 1.06611 1.23921 0.92470 0.87843 1.25257 0.95697 0.97974 0.99009 1.69619 1.12497 1.40583 1.31621 0.85806 0.78434 0.78729 0.81423 1.19214 1.20812 1.20735 0.92953 0.91309 0.93237 0.92161 0.90711 0.76725 0.88699 0.88628 0.90198 0.90238 0.93248 0.93189 0.94062 0.94034 0.89568 0.89953 0.91155 0.86960 0.94703 0.93716 0.88643 0.77546 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.76 37.16 0.33 -1.42 16 2 C -0.10 -1.17 5.38 -26.73 -0.14 -1.32 16 3 C 0.06 0.71 2.37 -66.64 -0.16 0.55 16 4 H 0.05 0.60 7.14 -51.93 -0.37 0.23 16 5 C 0.14 1.62 2.93 -66.57 -0.20 1.43 16 6 H 0.10 1.25 7.19 -51.92 -0.37 0.88 16 7 N -0.72 -6.96 5.08 -52.49 -0.27 -7.22 16 8 C 0.51 5.39 7.82 -10.98 -0.09 5.31 16 9 O -0.54 -7.84 15.68 5.56 0.09 -7.75 16 10 C -0.14 -0.94 5.70 -27.88 -0.16 -1.10 16 11 C -0.10 -0.87 4.87 -26.73 -0.13 -1.00 16 12 C 0.06 0.43 5.94 37.16 0.22 0.65 16 13 O -0.39 -3.60 10.70 -35.23 -0.38 -3.98 16 14 C 0.03 0.18 11.01 101.05 1.11 1.29 16 15 C -0.13 -1.78 6.76 -24.87 -0.17 -1.94 16 16 C 0.04 0.64 5.56 -1.63 -0.01 0.64 16 17 N -0.48 -7.61 4.68 -223.59 -1.05 -8.65 16 18 C 0.03 0.54 4.99 -4.98 -0.02 0.52 16 19 C 0.44 10.13 7.51 -10.98 -0.08 10.05 16 20 O -0.58 -15.06 13.57 5.54 0.08 -14.99 16 21 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 22 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 23 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 24 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 25 N -0.90 -24.15 13.05 55.50 0.72 -23.42 16 26 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.92 6.25 -51.93 -0.32 0.59 16 32 H 0.05 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 2.94 8.28 -40.82 -0.34 2.60 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 40 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 47 H 0.11 2.19 6.28 -51.93 -0.33 1.87 16 48 H 0.03 0.55 8.02 -51.93 -0.42 0.13 16 49 H 0.04 0.69 7.99 -51.93 -0.41 0.28 16 50 H 0.10 1.51 5.36 -51.93 -0.28 1.23 16 51 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 52 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 415.54 15.07 6.26 6.26 Total: -1.00 -32.96 415.54 -8.37 -41.33 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -9.01 Total: 10.81 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 0.26 Total: 5.83 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.65 Total: -53.30 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.21 Total: -26.71 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.96 -8.37 -41.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691951015.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.554 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds