Wall clock time and date at job start Wed Apr 1 2020 00:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46854 * 2 1 4 4 H 1.08993 * 109.91066 * 306.32229 * 3 2 1 5 5 C 1.54002 * 109.91553 * 185.22154 * 3 2 1 6 6 H 1.09008 * 110.30778 * 358.33873 * 5 3 2 7 7 N 1.46501 * 110.30996 * 120.50273 * 5 3 2 8 8 C 1.34772 * 120.00070 * 202.17164 * 7 5 3 9 9 O 1.21276 * 119.99988 * 359.97438 * 8 7 5 10 10 C 1.50705 * 119.99945 * 180.02562 * 8 7 5 11 11 C 1.52996 * 109.47091 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47147 * 180.02562 * 11 10 8 13 13 O 1.42897 * 109.47354 * 180.02562 * 12 11 10 14 14 C 1.42889 * 114.00105 * 179.97438 * 13 12 11 15 15 C 1.54590 * 105.14101 * 239.42386 * 5 3 2 16 16 C 1.54937 * 103.08046 * 337.95339 * 15 5 3 17 17 N 1.47899 * 109.91846 * 67.63499 * 3 2 1 18 18 C 1.46898 * 110.99836 * 265.19377 * 17 3 2 19 19 C 1.50698 * 109.47140 * 183.59358 * 18 17 3 20 20 O 1.21298 * 120.00234 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00106 * 179.97438 * 19 18 17 22 22 C 1.37091 * 120.00116 * 179.97438 * 21 19 18 23 23 H 1.08006 * 119.99981 * 0.02562 * 22 21 19 24 24 C 1.38956 * 120.00237 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99536 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00140 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47093 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46924 * 120.00421 * 26 24 22 29 29 H 1.48498 * 109.47352 * 240.00057 * 26 24 22 30 30 H 1.08995 * 109.47227 * 172.73946 * 1 2 3 31 31 H 1.08998 * 109.46831 * 292.74158 * 1 2 3 32 32 H 1.09000 * 109.47064 * 52.73563 * 1 2 3 33 33 H 1.09002 * 109.47258 * 240.00348 * 2 1 3 34 34 H 1.09002 * 109.46866 * 119.99903 * 2 1 3 35 35 H 0.97002 * 119.99621 * 22.17208 * 7 5 3 36 36 H 1.09001 * 109.46922 * 300.00144 * 10 8 7 37 37 H 1.09002 * 109.46559 * 60.00049 * 10 8 7 38 38 H 1.09005 * 109.46760 * 299.99855 * 11 10 8 39 39 H 1.08993 * 109.47568 * 59.99892 * 11 10 8 40 40 H 1.09001 * 109.46660 * 299.99887 * 12 11 10 41 41 H 1.08993 * 109.47208 * 59.99385 * 12 11 10 42 42 H 1.08998 * 109.47050 * 299.99510 * 14 13 12 43 43 H 1.08999 * 109.47618 * 59.99513 * 14 13 12 44 44 H 1.09006 * 109.47273 * 179.97438 * 14 13 12 45 45 H 1.09004 * 110.72855 * 96.39913 * 15 5 3 46 46 H 1.09000 * 110.72593 * 219.50490 * 15 5 3 47 47 H 1.09004 * 110.66580 * 155.94081 * 16 15 5 48 48 H 1.09004 * 110.66883 * 279.06781 * 16 15 5 49 49 H 1.09000 * 109.47156 * 303.58825 * 18 17 3 50 50 H 1.09001 * 109.47285 * 63.59431 * 18 17 3 51 51 H 0.96999 * 119.99807 * 0.02562 * 21 19 18 52 52 H 0.97002 * 119.99947 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5914 1.9948 -0.8257 5 6 3.5743 1.4565 -0.1318 6 1 3.9603 0.4377 -0.1663 7 7 3.9748 2.1941 -1.3325 8 6 5.1812 1.9699 -1.8900 9 8 5.9354 1.1580 -1.3974 10 6 5.5934 2.7291 -3.1249 11 6 6.9958 2.2890 -3.5497 12 6 7.4145 3.0601 -4.8030 13 8 8.7241 2.6487 -5.2002 14 6 9.2125 3.3117 -6.3680 15 6 4.0819 2.1799 1.1366 16 6 2.8497 3.0042 1.5870 17 7 1.7090 2.0939 1.2859 18 6 0.4498 2.8439 1.1874 19 6 0.1910 3.5639 2.4857 20 8 0.9780 3.4620 3.4031 21 7 -0.9148 4.3212 2.6275 22 6 -1.1505 4.9759 3.8088 23 1 -0.4497 4.8851 4.6256 24 6 -2.2903 5.7571 3.9549 25 7 -3.1427 5.8679 2.9608 26 14 -2.6110 6.6496 5.5641 27 1 -1.5083 6.3640 6.5168 28 1 -2.6820 8.1116 5.3136 29 1 -3.8974 6.1833 6.1411 30 1 -0.3633 -1.0194 -0.1299 31 1 -0.3633 0.3973 0.9478 32 1 -0.3633 0.6222 -0.8179 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.3717 2.8438 -1.7263 36 1 4.8886 2.5228 -3.9304 37 1 5.5970 3.7977 -2.9100 38 1 7.7007 2.4950 -2.7443 39 1 6.9918 1.2204 -3.7646 40 1 6.7096 2.8545 -5.6086 41 1 7.4186 4.1286 -4.5878 42 1 8.5445 3.1112 -7.2057 43 1 9.2542 4.3855 -6.1855 44 1 10.2114 2.9443 -6.6034 45 1 4.3656 1.4597 1.9041 46 1 4.9186 2.8363 0.8976 47 1 2.9015 3.2218 2.6539 48 1 2.7704 3.9249 1.0089 49 1 0.5216 3.5698 0.3774 50 1 -0.3693 2.1537 0.9853 51 1 -1.5444 4.4024 1.8941 52 1 -3.9382 6.4135 3.0626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691951015.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:57 Heat of formation + Delta-G solvation = -148.247324 kcal Electronic energy + Delta-G solvation = -30073.241836 eV Core-core repulsion = 25878.425180 eV Total energy + Delta-G solvation = -4194.816656 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.45826 -40.39725 -39.28573 -38.78839 -36.03526 -35.35918 -34.62068 -34.08909 -33.29955 -32.18182 -29.20317 -28.63088 -27.88633 -26.58829 -25.86882 -23.79510 -23.21385 -22.13438 -21.50846 -21.03571 -20.71026 -19.85520 -18.26404 -17.70738 -17.48281 -17.28848 -17.11764 -16.64269 -16.47668 -16.44147 -16.05703 -15.79592 -15.75884 -15.40329 -15.26878 -14.68306 -14.48643 -14.22979 -14.10258 -13.83398 -13.64981 -13.44773 -13.33735 -13.03963 -13.01884 -12.92453 -12.60841 -12.52524 -12.40249 -12.34995 -12.30330 -12.11551 -11.96451 -11.91478 -11.87419 -11.77192 -11.56973 -11.42375 -10.88983 -10.59797 -10.24037 -10.05475 -9.98568 -9.31393 -8.46054 -5.93928 1.36315 1.42042 1.55582 1.65625 2.06327 2.07273 2.29408 2.80549 2.94765 3.21099 3.30346 3.47957 3.74119 3.76451 4.00757 4.03585 4.12242 4.17525 4.25579 4.31540 4.34656 4.39588 4.42906 4.48336 4.49210 4.53186 4.55207 4.56864 4.59788 4.70078 4.74553 4.74713 4.87401 4.89971 5.02385 5.07242 5.13439 5.15384 5.22264 5.25890 5.35663 5.42464 5.48156 5.52164 5.86680 5.97824 6.14301 6.26937 6.55205 6.62115 7.14700 7.27331 7.57751 8.14121 8.71499 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.001927 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.363681 B =14526.254034 C =15353.538886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 C 0.065 3.935 4 H 0.079 0.921 5 C 0.147 3.853 6 H 0.090 0.910 7 N -0.712 5.712 8 C 0.511 3.489 9 O -0.584 6.584 10 C -0.128 4.128 11 C -0.102 4.102 12 C 0.061 3.939 13 O -0.425 6.425 14 C 0.026 3.974 15 C -0.124 4.124 16 C 0.045 3.955 17 N -0.501 5.501 18 C 0.046 3.954 19 C 0.440 3.560 20 O -0.615 6.615 21 N -0.573 5.573 22 C -0.330 4.330 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.275 1.275 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.414 0.586 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.039 0.961 49 H 0.071 0.929 50 H 0.114 0.886 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.289 -4.987 -21.590 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.140 4.140 3 C -0.044 4.044 4 H 0.097 0.903 5 C 0.041 3.959 6 H 0.109 0.891 7 N -0.365 5.365 8 C 0.299 3.701 9 O -0.463 6.463 10 C -0.167 4.167 11 C -0.140 4.140 12 C -0.015 4.015 13 O -0.345 6.345 14 C -0.070 4.070 15 C -0.163 4.163 16 C -0.082 4.082 17 N -0.226 5.226 18 C -0.085 4.085 19 C 0.228 3.772 20 O -0.501 6.501 21 N -0.211 5.211 22 C -0.460 4.460 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.200 1.200 28 H -0.196 1.196 29 H -0.197 1.197 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.251 0.749 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.057 0.943 49 H 0.088 0.912 50 H 0.132 0.868 51 H 0.230 0.770 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.176 -6.044 -20.143 25.362 hybrid contribution -0.921 1.633 -0.036 1.876 sum 13.255 -4.411 -20.178 24.542 Atomic orbital electron populations 1.21851 0.95387 1.02241 1.01528 1.21477 0.96400 0.93823 1.02303 1.22779 0.93188 0.97403 0.91003 0.90313 1.21628 0.93489 0.96480 0.84273 0.89146 1.46090 1.18305 1.43541 1.28569 1.21241 0.80733 0.82286 0.85801 1.90716 1.52988 1.37322 1.65306 1.21562 0.97883 1.01977 0.95310 1.21150 0.95550 1.00496 0.96790 1.22616 0.83936 0.98506 0.96470 1.87845 1.33524 1.66242 1.46906 1.22913 1.00335 0.97143 0.86636 1.22819 0.96829 0.99204 0.97451 1.23248 0.89638 0.93690 1.01655 1.64589 1.00933 1.27827 1.29261 1.22127 0.95168 0.97342 0.93896 1.20757 0.82693 0.82834 0.90935 1.90475 1.48269 1.67074 1.44267 1.41907 1.21190 1.42922 1.15079 1.19667 1.07173 1.25967 0.93203 0.90461 1.25977 0.95005 0.98076 1.02065 1.69670 1.12712 1.40799 1.32854 0.84909 0.78129 0.77980 0.77552 1.19996 1.19623 1.19698 0.91785 0.93794 0.91799 0.89992 0.92263 0.74920 0.85511 0.86185 0.92692 0.92213 0.91346 0.91744 0.92838 0.93061 0.89046 0.91044 0.90921 0.91200 0.94254 0.91155 0.86844 0.77036 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.76 71.98 0.63 -2.45 16 2 C -0.10 -2.07 5.38 30.60 0.16 -1.91 16 3 C 0.06 1.42 2.37 45.06 0.11 1.53 16 4 H 0.08 1.40 7.14 -2.39 -0.02 1.38 16 5 C 0.15 3.25 2.93 45.87 0.13 3.39 16 6 H 0.09 2.22 7.19 -2.38 -0.02 2.20 16 7 N -0.71 -11.84 5.08 -438.36 -2.23 -14.07 16 8 C 0.51 9.78 7.82 87.66 0.69 10.47 16 9 O -0.58 -16.90 15.68 -3.02 -0.05 -16.95 16 10 C -0.13 -1.36 5.70 29.85 0.17 -1.19 16 11 C -0.10 -1.59 4.87 30.59 0.15 -1.44 16 12 C 0.06 0.74 5.94 71.98 0.43 1.17 16 13 O -0.43 -7.41 10.70 -148.98 -1.59 -9.01 16 14 C 0.03 0.26 11.01 113.37 1.25 1.51 16 15 C -0.12 -3.33 6.76 31.80 0.21 -3.12 16 16 C 0.05 1.46 5.56 86.56 0.48 1.94 16 17 N -0.50 -15.40 4.68 -861.31 -4.03 -19.43 16 18 C 0.05 1.51 4.99 85.56 0.43 1.93 16 19 C 0.44 20.43 7.51 87.66 0.66 21.09 16 20 O -0.61 -33.29 13.57 -3.09 -0.04 -33.34 16 21 N -0.57 -28.80 5.29 -306.97 -1.62 -30.42 16 22 C -0.33 -18.54 9.68 84.04 0.81 -17.73 16 23 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 24 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 25 N -0.92 -48.75 13.05 21.67 0.28 -48.46 16 26 Si 0.99 42.65 29.55 68.60 2.03 44.67 16 27 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 29 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.04 1.11 6.25 -2.39 -0.01 1.09 16 32 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.41 4.49 8.28 -92.71 -0.77 3.72 16 36 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.05 1.11 8.10 -2.38 -0.02 1.09 16 39 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 40 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 46 H 0.07 1.91 8.05 -2.39 -0.02 1.89 16 47 H 0.07 2.88 6.28 -2.39 -0.01 2.86 16 48 H 0.04 1.21 8.02 -2.38 -0.02 1.19 16 49 H 0.07 1.98 7.99 -2.39 -0.02 1.96 16 50 H 0.11 3.38 5.36 -2.39 -0.01 3.36 16 51 H 0.40 18.79 7.90 -92.71 -0.73 18.06 16 52 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -74.77 415.54 -1.05 -75.82 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -0.58 Total: 36.15 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 6.78 Total: 15.03 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -7.60 Total: -112.38 kcal Atomic # 8 Polarization: -57.61 SS G_CDS: -1.68 Total: -59.30 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -74.77 -1.05 -75.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691951015.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.428 kcal (2) G-P(sol) polarization free energy of solvation -74.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds