Wall clock time and date at job start Wed Apr 1 2020 00:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42900 * 109.47748 * 2 1 4 4 C 1.42898 * 114.00573 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46707 * 30.00293 * 4 3 2 6 6 C 1.53000 * 109.47088 * 270.00688 * 4 3 2 7 7 C 1.50699 * 109.47101 * 150.00453 * 4 3 2 8 8 O 1.21275 * 119.99994 * 5.00184 * 7 4 3 9 9 N 1.34781 * 119.99873 * 185.00487 * 7 4 3 10 10 C 1.46495 * 119.99768 * 179.72385 * 9 7 4 11 11 H 1.08996 * 110.29320 * 324.59970 * 10 9 7 12 12 C 1.54261 * 110.32622 * 86.72797 * 10 9 7 13 13 C 1.54379 * 105.06269 * 118.89094 * 12 10 9 14 14 N 1.48564 * 104.59336 * 23.85846 * 13 12 10 15 15 C 1.46902 * 110.99998 * 200.95816 * 14 13 12 16 16 C 1.50695 * 109.47093 * 284.03870 * 15 14 13 17 17 O 1.21293 * 120.00264 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00093 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99999 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99788 * 0.02562 * 19 18 16 21 21 C 1.38944 * 119.99819 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99920 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 120.00276 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47269 * 89.99342 * 23 21 19 25 25 H 1.48494 * 109.46960 * 209.99702 * 23 21 19 26 26 H 1.48502 * 109.46873 * 329.99454 * 23 21 19 27 27 C 1.48561 * 104.21697 * 320.51309 * 14 13 12 28 28 H 1.09000 * 110.41454 * 280.70524 * 27 14 13 29 29 C 1.53005 * 110.40740 * 158.26403 * 27 14 13 30 30 C 1.53003 * 109.47099 * 179.15496 * 29 27 14 31 31 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46760 * 299.99953 * 1 2 3 33 33 H 1.08998 * 109.47197 * 59.99211 * 1 2 3 34 34 H 1.09003 * 109.47065 * 240.00483 * 2 1 3 35 35 H 1.08994 * 109.47627 * 120.00581 * 2 1 3 36 36 H 1.09001 * 109.47032 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.47024 * 299.99410 * 6 4 3 38 38 H 1.08998 * 109.47281 * 59.99969 * 6 4 3 39 39 H 0.97000 * 120.00109 * 359.97438 * 9 7 4 40 40 H 1.08999 * 110.32507 * 237.79033 * 12 10 9 41 41 H 1.09009 * 110.32155 * 359.89727 * 12 10 9 42 42 H 1.09000 * 110.40949 * 142.63440 * 13 12 10 43 43 H 1.08992 * 110.41473 * 264.95781 * 13 12 10 44 44 H 1.09008 * 109.46626 * 44.03394 * 15 14 13 45 45 H 1.08994 * 109.47130 * 164.03626 * 15 14 13 46 46 H 0.96999 * 120.00038 * 0.02562 * 18 16 15 47 47 H 0.97006 * 119.99965 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.47210 * 299.15598 * 29 27 14 49 49 H 1.09003 * 109.46945 * 59.15549 * 29 27 14 50 50 H 1.08993 * 109.47376 * 185.27663 * 30 29 27 51 51 H 1.09006 * 109.46760 * 305.27425 * 30 29 27 52 52 H 1.09004 * 109.46917 * 65.27105 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8631 0.6016 -0.5148 6 6 3.9400 1.4999 1.4417 7 6 3.8343 2.7265 -0.7109 8 8 2.9857 3.5049 -1.0913 9 7 5.1380 2.9939 -0.9234 10 6 5.5298 4.2221 -1.6193 11 1 4.8028 4.4661 -2.3938 12 6 5.6569 5.3883 -0.6175 13 6 7.1310 5.8376 -0.7098 14 7 7.5730 5.3966 -2.0579 15 6 9.0369 5.2943 -2.1246 16 6 9.6329 6.6748 -2.2246 17 8 8.9093 7.6481 -2.2394 18 7 10.9699 6.8279 -2.2976 19 6 11.5121 8.0839 -2.3891 20 1 10.8677 8.9505 -2.4023 21 6 12.8905 8.2418 -2.4639 22 7 13.4102 9.4456 -2.5511 23 14 14.0050 6.7428 -2.4404 24 1 14.2328 6.2734 -3.8307 25 1 15.3054 7.1025 -1.8201 26 1 13.3628 5.6608 -1.6516 27 6 6.9378 4.0650 -2.2326 28 1 7.5024 3.3013 -1.6978 29 6 6.8364 3.7131 -3.7182 30 6 6.1992 2.3307 -3.8725 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8898 36 1 5.0266 1.5855 1.4413 37 1 3.5078 2.3584 1.9559 38 1 3.6483 0.5839 1.9554 39 1 5.8168 2.3715 -0.6189 40 1 4.9936 6.2053 -0.9014 41 1 5.4260 5.0472 0.3918 42 1 7.2042 6.9215 -0.6215 43 1 7.7254 5.3529 0.0646 44 1 9.4081 4.8026 -1.2253 45 1 9.3209 4.7116 -3.0008 46 1 11.5486 6.0496 -2.2862 47 1 14.3725 9.5558 -2.6037 48 1 6.2210 4.4556 -4.2263 49 1 7.8335 3.7049 -4.1585 50 1 6.2123 2.0398 -4.9228 51 1 6.7624 1.6037 -3.2872 52 1 5.1692 2.3636 -3.5173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692166153.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:30 Heat of formation + Delta-G solvation = -111.014592 kcal Electronic energy + Delta-G solvation = -30694.187959 eV Core-core repulsion = 26500.985835 eV Total energy + Delta-G solvation = -4193.202124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.61716 -39.39296 -38.20871 -37.59659 -34.64675 -33.91446 -33.42133 -32.88350 -31.70045 -31.15259 -30.25412 -27.65857 -26.75524 -24.91394 -23.97977 -23.22102 -22.84308 -21.52012 -20.47561 -20.08316 -19.32559 -18.34432 -17.55450 -17.48363 -16.42709 -16.18435 -16.05221 -15.38993 -15.29184 -14.90708 -14.84514 -14.52029 -14.42946 -13.85064 -13.69650 -13.59830 -13.50088 -13.24340 -13.09778 -12.96268 -12.73532 -12.61602 -12.46198 -12.40938 -12.09505 -12.04367 -11.82327 -11.62397 -11.50192 -11.43463 -11.37801 -11.20434 -11.08802 -10.75649 -10.60147 -10.59005 -10.30357 -9.97143 -9.73552 -9.55182 -9.23564 -8.66418 -8.18189 -8.13077 -6.30115 -3.81434 2.36914 2.49901 3.01015 3.05941 3.14181 3.46037 3.74763 3.92735 4.10235 4.25559 4.36766 4.46623 4.50007 4.56036 4.65658 4.78183 4.86501 4.90896 4.94829 4.99676 5.09175 5.11888 5.20340 5.21908 5.24453 5.30570 5.33845 5.39116 5.48084 5.52277 5.61137 5.62824 5.65481 5.73121 5.78136 5.87794 5.91347 5.93227 6.04733 6.11176 6.21354 6.29646 6.34827 6.65998 7.00455 7.04118 7.23811 7.59204 7.99160 8.15604 8.61513 8.96728 9.43545 9.85236 10.83138 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.002041 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.217585 B =13718.495179 C =13858.493339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.071 3.929 5 H 0.085 0.915 6 C -0.171 4.171 7 C 0.514 3.486 8 O -0.514 6.514 9 N -0.720 5.720 10 C 0.150 3.850 11 H 0.102 0.898 12 C -0.133 4.133 13 C 0.038 3.962 14 N -0.476 5.476 15 C 0.032 3.968 16 C 0.455 3.545 17 O -0.555 6.555 18 N -0.593 5.593 19 C -0.303 4.303 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.271 1.271 27 C 0.057 3.943 28 H 0.054 0.946 29 C -0.110 4.110 30 C -0.149 4.149 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.397 0.603 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.039 0.961 44 H 0.051 0.949 45 H 0.090 0.910 46 H 0.369 0.631 47 H 0.273 0.727 48 H 0.076 0.924 49 H 0.067 0.933 50 H 0.056 0.944 51 H 0.050 0.950 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.171 -25.331 5.856 31.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.010 3.990 5 H 0.102 0.898 6 C -0.228 4.228 7 C 0.299 3.701 8 O -0.387 6.387 9 N -0.374 5.374 10 C 0.045 3.955 11 H 0.120 0.880 12 C -0.172 4.172 13 C -0.090 4.090 14 N -0.200 5.200 15 C -0.099 4.099 16 C 0.240 3.760 17 O -0.436 6.436 18 N -0.234 5.234 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.053 4.053 28 H 0.072 0.928 29 C -0.148 4.148 30 C -0.207 4.207 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.231 0.769 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.202 0.798 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.086 0.914 50 H 0.075 0.925 51 H 0.069 0.931 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.395 -23.389 5.128 30.194 hybrid contribution 2.078 -2.255 0.854 3.184 sum -16.316 -25.644 5.982 30.978 Atomic orbital electron populations 1.21729 0.93334 1.02250 1.03530 1.22597 0.96074 0.83482 1.00041 1.88074 1.18236 1.26331 1.94919 1.21877 0.83931 0.96493 0.96729 0.89759 1.22235 1.01641 1.03886 0.95073 1.20337 0.82623 0.87575 0.79578 1.90747 1.50036 1.48619 1.49308 1.46082 1.06959 1.24233 1.60145 1.21731 0.96031 0.83235 0.94485 0.88014 1.22749 0.97206 0.98195 0.99026 1.23170 0.93839 1.03171 0.88812 1.65054 1.06337 1.20118 1.28447 1.22106 0.88647 0.97545 1.01650 1.19572 0.82519 0.89914 0.83982 1.90566 1.59499 1.40421 1.53132 1.42203 1.05536 1.08337 1.67277 1.19423 0.91725 0.84457 1.47580 0.86281 1.25028 0.96636 0.96756 0.97771 1.69623 1.12535 1.20754 1.49328 0.86679 0.81315 0.82579 0.78825 1.19637 1.20235 1.19627 1.22929 0.93585 0.91789 0.96946 0.92826 1.21459 1.01937 0.97042 0.94399 1.21766 1.00760 0.96635 1.01541 0.90995 0.91698 0.91587 0.93242 0.93218 0.90930 0.90915 0.91228 0.76863 0.90095 0.91102 0.88302 0.94277 0.93065 0.89188 0.79839 0.91659 0.90571 0.91435 0.92535 0.93135 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.05 0.36 6.47 37.16 0.24 0.60 16 3 O -0.36 -3.63 9.53 -55.09 -0.52 -4.16 16 4 C 0.07 0.56 3.13 -27.88 -0.09 0.47 16 5 H 0.08 0.44 7.79 -51.93 -0.40 0.04 16 6 C -0.17 -1.01 9.48 37.16 0.35 -0.66 16 7 C 0.51 5.55 7.17 -10.98 -0.08 5.47 16 8 O -0.51 -8.06 16.20 -14.30 -0.23 -8.29 16 9 N -0.72 -6.25 4.62 -52.47 -0.24 -6.49 16 10 C 0.15 1.69 2.16 -66.55 -0.14 1.55 16 11 H 0.10 1.35 7.31 -51.93 -0.38 0.97 16 12 C -0.13 -1.67 6.78 -25.35 -0.17 -1.84 16 13 C 0.04 0.56 5.96 -2.18 -0.01 0.54 16 14 N -0.48 -7.27 4.63 -223.57 -1.04 -8.31 16 15 C 0.03 0.52 5.27 -4.98 -0.03 0.50 16 16 C 0.45 10.19 7.64 -10.99 -0.08 10.11 16 17 O -0.56 -14.79 14.92 5.55 0.08 -14.71 16 18 N -0.59 -13.98 5.09 -10.97 -0.06 -14.04 16 19 C -0.30 -8.54 10.16 -14.93 -0.15 -8.69 16 20 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.75 13.96 55.50 0.77 -24.97 16 23 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 27 C 0.06 0.64 2.02 -66.07 -0.13 0.50 16 28 H 0.05 0.51 7.59 -51.93 -0.39 0.12 16 29 C -0.11 -1.18 5.55 -26.73 -0.15 -1.33 16 30 C -0.15 -1.26 9.56 37.16 0.36 -0.91 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.27 8.08 -51.93 -0.42 -0.15 16 35 H 0.05 0.24 7.87 -51.93 -0.41 -0.16 16 36 H 0.07 0.31 7.92 -51.93 -0.41 -0.10 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 39 H 0.40 2.30 8.13 -40.82 -0.33 1.97 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 0.81 7.95 -51.92 -0.41 0.40 16 42 H 0.10 1.77 7.34 -51.93 -0.38 1.38 16 43 H 0.04 0.53 7.73 -51.93 -0.40 0.12 16 44 H 0.05 0.72 7.74 -51.92 -0.40 0.32 16 45 H 0.09 1.27 7.12 -51.93 -0.37 0.90 16 46 H 0.37 7.60 5.76 -40.82 -0.24 7.37 16 47 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 49 H 0.07 0.74 7.25 -51.93 -0.38 0.36 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 52 H 0.05 0.50 7.38 -51.93 -0.38 0.11 16 LS Contribution 416.15 15.07 6.27 6.27 Total: -1.00 -35.71 416.15 -8.54 -44.25 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -9.05 Total: 9.14 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 0.20 Total: 6.82 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.56 Total: -53.81 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.67 Total: -27.16 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.71 -8.54 -44.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692166153.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.766 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds