Wall clock time and date at job start Wed Apr 1 2020 00:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42900 * 109.47748 * 2 1 4 4 C 1.42898 * 114.00573 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46707 * 30.00293 * 4 3 2 6 6 C 1.53000 * 109.47088 * 270.00688 * 4 3 2 7 7 C 1.50699 * 109.47101 * 150.00453 * 4 3 2 8 8 O 1.21275 * 119.99994 * 5.00184 * 7 4 3 9 9 N 1.34781 * 119.99873 * 185.00487 * 7 4 3 10 10 C 1.46495 * 119.99768 * 179.72385 * 9 7 4 11 11 H 1.08996 * 110.29320 * 324.59970 * 10 9 7 12 12 C 1.54261 * 110.32622 * 86.72797 * 10 9 7 13 13 C 1.54379 * 105.06269 * 118.89094 * 12 10 9 14 14 N 1.48564 * 104.59336 * 23.85846 * 13 12 10 15 15 C 1.46902 * 110.99998 * 200.95816 * 14 13 12 16 16 C 1.50695 * 109.47093 * 284.03870 * 15 14 13 17 17 O 1.21293 * 120.00264 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00093 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99999 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99788 * 0.02562 * 19 18 16 21 21 C 1.38944 * 119.99819 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99920 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 120.00276 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47269 * 89.99342 * 23 21 19 25 25 H 1.48494 * 109.46960 * 209.99702 * 23 21 19 26 26 H 1.48502 * 109.46873 * 329.99454 * 23 21 19 27 27 C 1.48561 * 104.21697 * 320.51309 * 14 13 12 28 28 H 1.09000 * 110.41454 * 280.70524 * 27 14 13 29 29 C 1.53005 * 110.40740 * 158.26403 * 27 14 13 30 30 C 1.53003 * 109.47099 * 179.15496 * 29 27 14 31 31 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46760 * 299.99953 * 1 2 3 33 33 H 1.08998 * 109.47197 * 59.99211 * 1 2 3 34 34 H 1.09003 * 109.47065 * 240.00483 * 2 1 3 35 35 H 1.08994 * 109.47627 * 120.00581 * 2 1 3 36 36 H 1.09001 * 109.47032 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.47024 * 299.99410 * 6 4 3 38 38 H 1.08998 * 109.47281 * 59.99969 * 6 4 3 39 39 H 0.97000 * 120.00109 * 359.97438 * 9 7 4 40 40 H 1.08999 * 110.32507 * 237.79033 * 12 10 9 41 41 H 1.09009 * 110.32155 * 359.89727 * 12 10 9 42 42 H 1.09000 * 110.40949 * 142.63440 * 13 12 10 43 43 H 1.08992 * 110.41473 * 264.95781 * 13 12 10 44 44 H 1.09008 * 109.46626 * 44.03394 * 15 14 13 45 45 H 1.08994 * 109.47130 * 164.03626 * 15 14 13 46 46 H 0.96999 * 120.00038 * 0.02562 * 18 16 15 47 47 H 0.97006 * 119.99965 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.47210 * 299.15598 * 29 27 14 49 49 H 1.09003 * 109.46945 * 59.15549 * 29 27 14 50 50 H 1.08993 * 109.47376 * 185.27663 * 30 29 27 51 51 H 1.09006 * 109.46760 * 305.27425 * 30 29 27 52 52 H 1.09004 * 109.46917 * 65.27105 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8631 0.6016 -0.5148 6 6 3.9400 1.4999 1.4417 7 6 3.8343 2.7265 -0.7109 8 8 2.9857 3.5049 -1.0913 9 7 5.1380 2.9939 -0.9234 10 6 5.5298 4.2221 -1.6193 11 1 4.8028 4.4661 -2.3938 12 6 5.6569 5.3883 -0.6175 13 6 7.1310 5.8376 -0.7098 14 7 7.5730 5.3966 -2.0579 15 6 9.0369 5.2943 -2.1246 16 6 9.6329 6.6748 -2.2246 17 8 8.9093 7.6481 -2.2394 18 7 10.9699 6.8279 -2.2976 19 6 11.5121 8.0839 -2.3891 20 1 10.8677 8.9505 -2.4023 21 6 12.8905 8.2418 -2.4639 22 7 13.4102 9.4456 -2.5511 23 14 14.0050 6.7428 -2.4404 24 1 14.2328 6.2734 -3.8307 25 1 15.3054 7.1025 -1.8201 26 1 13.3628 5.6608 -1.6516 27 6 6.9378 4.0650 -2.2326 28 1 7.5024 3.3013 -1.6978 29 6 6.8364 3.7131 -3.7182 30 6 6.1992 2.3307 -3.8725 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8898 36 1 5.0266 1.5855 1.4413 37 1 3.5078 2.3584 1.9559 38 1 3.6483 0.5839 1.9554 39 1 5.8168 2.3715 -0.6189 40 1 4.9936 6.2053 -0.9014 41 1 5.4260 5.0472 0.3918 42 1 7.2042 6.9215 -0.6215 43 1 7.7254 5.3529 0.0646 44 1 9.4081 4.8026 -1.2253 45 1 9.3209 4.7116 -3.0008 46 1 11.5486 6.0496 -2.2862 47 1 14.3725 9.5558 -2.6037 48 1 6.2210 4.4556 -4.2263 49 1 7.8335 3.7049 -4.1585 50 1 6.2123 2.0398 -4.9228 51 1 6.7624 1.6037 -3.2872 52 1 5.1692 2.3636 -3.5173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692166153.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:29 Heat of formation + Delta-G solvation = -139.317551 kcal Electronic energy + Delta-G solvation = -30695.415267 eV Core-core repulsion = 26500.985835 eV Total energy + Delta-G solvation = -4194.429432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.53582 -40.54473 -39.56189 -38.53817 -36.06060 -35.47980 -34.30923 -33.76059 -33.47878 -32.13655 -30.88592 -28.67947 -28.11791 -26.00971 -25.28109 -23.89269 -23.50253 -22.57706 -21.47469 -21.22412 -20.89987 -20.15824 -18.39377 -18.17896 -17.65884 -17.29409 -16.80225 -16.68580 -16.46088 -16.23717 -16.03762 -15.56598 -15.35032 -15.16056 -14.91555 -14.67690 -14.36379 -14.24037 -14.20210 -14.03348 -13.93602 -13.55155 -13.39209 -13.18879 -13.01072 -12.94458 -12.86897 -12.71372 -12.47580 -12.37472 -12.36161 -12.26894 -12.02910 -11.97439 -11.96529 -11.81371 -11.50877 -11.46557 -10.96782 -10.45144 -10.40950 -10.22025 -10.11361 -9.38339 -8.39100 -6.00078 1.30682 1.37566 1.46034 1.56724 1.77368 1.99879 2.24994 2.62579 2.95583 3.15954 3.23165 3.39057 3.69199 3.71643 3.93703 4.00261 4.04661 4.06855 4.17029 4.21525 4.28014 4.30715 4.34047 4.36540 4.46140 4.50616 4.55533 4.60058 4.62109 4.64760 4.80046 4.89082 4.90259 4.98534 5.01929 5.02924 5.10137 5.20606 5.22202 5.27847 5.29673 5.40563 5.43804 5.55133 5.86346 5.94601 6.04711 6.14871 6.56159 6.62566 6.91526 7.24184 7.42943 8.01806 8.78806 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.002041 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.217585 B =13718.495179 C =13858.493339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.395 6.395 4 C 0.073 3.927 5 H 0.120 0.880 6 C -0.166 4.166 7 C 0.512 3.488 8 O -0.573 6.573 9 N -0.699 5.699 10 C 0.159 3.841 11 H 0.076 0.924 12 C -0.126 4.126 13 C 0.042 3.958 14 N -0.509 5.509 15 C 0.046 3.954 16 C 0.452 3.548 17 O -0.608 6.608 18 N -0.593 5.593 19 C -0.327 4.327 20 H 0.052 0.948 21 C -0.018 4.018 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.228 1.228 27 C 0.067 3.933 28 H 0.092 0.908 29 C -0.111 4.111 30 C -0.141 4.141 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.417 0.583 40 H 0.055 0.945 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.122 0.878 46 H 0.390 0.610 47 H 0.278 0.722 48 H 0.049 0.951 49 H 0.071 0.929 50 H 0.060 0.940 51 H 0.075 0.925 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.572 -31.453 6.786 35.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.315 6.315 4 C 0.012 3.988 5 H 0.137 0.863 6 C -0.224 4.224 7 C 0.298 3.702 8 O -0.450 6.450 9 N -0.354 5.354 10 C 0.054 3.946 11 H 0.094 0.906 12 C -0.165 4.165 13 C -0.086 4.086 14 N -0.233 5.233 15 C -0.085 4.085 16 C 0.239 3.761 17 O -0.492 6.492 18 N -0.235 5.235 19 C -0.456 4.456 20 H 0.070 0.930 21 C -0.216 4.216 22 N -0.578 5.578 23 Si 0.786 3.214 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.151 1.151 27 C -0.041 4.041 28 H 0.109 0.891 29 C -0.149 4.149 30 C -0.198 4.198 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.256 0.744 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.140 0.860 46 H 0.225 0.775 47 H 0.088 0.912 48 H 0.068 0.932 49 H 0.090 0.910 50 H 0.079 0.921 51 H 0.094 0.906 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.790 -29.573 6.075 34.545 hybrid contribution 1.441 -0.213 0.543 1.554 sum -15.349 -29.786 6.618 34.155 Atomic orbital electron populations 1.21776 0.93566 1.03380 1.02277 1.22809 0.96046 0.82271 1.01610 1.88043 1.19658 1.28584 1.95171 1.22026 0.83381 0.95573 0.97819 0.86270 1.22242 1.02856 1.03830 0.93433 1.21052 0.82402 0.88062 0.78650 1.90729 1.51713 1.50762 1.51836 1.45821 1.07037 1.23440 1.59096 1.21405 0.95820 0.83845 0.93579 0.90617 1.22653 0.95508 0.98162 1.00211 1.23022 0.95342 1.00711 0.89525 1.64918 1.06241 1.23261 1.28896 1.22012 0.88812 0.92915 1.04786 1.20927 0.81806 0.92266 0.81067 1.90555 1.60738 1.43294 1.54612 1.42009 1.06394 1.07158 1.67947 1.18978 0.91859 0.84893 1.49895 0.93016 1.26146 0.98044 1.01250 0.96127 1.69819 1.13372 1.24309 1.50303 0.85343 0.77913 0.78027 0.80071 1.18168 1.20202 1.15099 1.22945 0.92954 0.90486 0.97703 0.89064 1.21476 1.01873 0.97855 0.93717 1.21694 1.00252 0.95521 1.02374 0.88653 0.92547 0.93257 0.92024 0.91077 0.88628 0.93193 0.89391 0.74429 0.92583 0.89652 0.92839 0.92079 0.89343 0.86014 0.77481 0.91238 0.93220 0.91000 0.92105 0.90560 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 71.98 0.74 -0.92 16 2 C 0.05 0.53 6.47 71.98 0.47 0.99 16 3 O -0.40 -7.52 9.53 -129.99 -1.24 -8.76 16 4 C 0.07 0.95 3.13 29.85 0.09 1.04 16 5 H 0.12 0.70 7.79 -2.39 -0.02 0.68 16 6 C -0.17 -1.41 9.48 71.98 0.68 -0.72 16 7 C 0.51 10.29 7.17 87.66 0.63 10.92 16 8 O -0.57 -18.38 16.20 15.98 0.26 -18.12 16 9 N -0.70 -10.17 4.62 -438.31 -2.02 -12.19 16 10 C 0.16 3.40 2.16 45.89 0.10 3.50 16 11 H 0.08 2.07 7.31 -2.39 -0.02 2.06 16 12 C -0.13 -3.18 6.78 31.49 0.21 -2.97 16 13 C 0.04 1.22 5.96 86.45 0.51 1.73 16 14 N -0.51 -14.81 4.63 -861.23 -3.99 -18.80 16 15 C 0.05 1.34 5.27 85.56 0.45 1.79 16 16 C 0.45 20.21 7.64 87.66 0.67 20.88 16 17 O -0.61 -34.17 14.92 -3.07 -0.05 -34.21 16 18 N -0.59 -27.58 5.09 -306.99 -1.56 -29.14 16 19 C -0.33 -19.19 10.16 84.04 0.85 -18.34 16 20 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 21 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 22 N -0.94 -56.77 13.96 21.66 0.30 -56.47 16 23 Si 0.97 38.14 27.74 68.60 1.90 40.05 16 24 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 25 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.23 -7.37 6.52 99.48 0.65 -6.72 16 27 C 0.07 1.31 2.02 45.06 0.09 1.40 16 28 H 0.09 1.16 7.59 -2.39 -0.02 1.14 16 29 C -0.11 -2.11 5.55 30.60 0.17 -1.94 16 30 C -0.14 -1.89 9.56 71.98 0.69 -1.20 16 31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.50 8.08 -2.39 -0.02 0.48 16 35 H 0.07 0.45 7.87 -2.39 -0.02 0.44 16 36 H 0.10 0.35 7.92 -2.39 -0.02 0.33 16 37 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.09 0.45 7.87 -2.39 -0.02 0.43 16 39 H 0.42 2.74 8.13 -92.71 -0.75 1.99 16 40 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.08 1.88 7.95 -2.38 -0.02 1.86 16 42 H 0.05 2.03 7.34 -2.39 -0.02 2.02 16 43 H 0.06 1.49 7.73 -2.39 -0.02 1.47 16 44 H 0.09 1.98 7.74 -2.38 -0.02 1.96 16 45 H 0.12 2.82 7.12 -2.39 -0.02 2.80 16 46 H 0.39 14.71 5.76 -92.71 -0.53 14.18 16 47 H 0.28 15.39 8.31 -92.70 -0.77 14.62 16 48 H 0.05 1.20 8.07 -2.39 -0.02 1.18 16 49 H 0.07 1.32 7.25 -2.39 -0.02 1.30 16 50 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 52 H 0.04 0.70 7.38 -2.38 -0.02 0.68 16 Total: -1.00 -89.01 416.15 0.00 -89.00 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: -0.43 Total: 32.98 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 6.83 Total: 15.66 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -7.27 Total: -116.60 kcal Atomic # 8 Polarization: -60.07 SS G_CDS: -1.03 Total: -61.10 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 1.90 Total: 40.05 kcal Total: -89.01 0.00 -89.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692166153.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.313 kcal (2) G-P(sol) polarization free energy of solvation -89.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds