Wall clock time and date at job start Wed Apr 1 2020 00:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47024 * 2 1 4 4 H 1.08999 * 109.47467 * 54.99685 * 3 2 1 5 5 C 1.53005 * 109.46708 * 294.99775 * 3 2 1 6 6 C 1.52997 * 109.47177 * 175.00260 * 3 2 1 7 7 H 1.08999 * 109.47599 * 56.18219 * 6 3 2 8 8 O 1.42898 * 109.46904 * 296.18028 * 6 3 2 9 9 C 1.42904 * 114.00032 * 150.00038 * 8 6 3 10 10 C 1.50697 * 109.47225 * 176.18688 * 6 3 2 11 11 O 1.21279 * 120.00746 * 90.80929 * 10 6 3 12 12 N 1.34780 * 119.99649 * 270.81300 * 10 6 3 13 13 C 1.46498 * 120.00094 * 354.63922 * 12 10 6 14 14 C 1.46502 * 120.00034 * 174.64190 * 12 10 6 15 15 C 1.53512 * 114.17125 * 120.00001 * 14 12 10 16 16 N 1.47481 * 87.93458 * 87.81006 * 15 14 12 17 17 C 1.46900 * 110.99999 * 138.70335 * 16 15 14 18 18 C 1.50696 * 109.47410 * 170.00108 * 17 16 15 19 19 O 1.21296 * 119.99920 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00440 * 179.72187 * 18 17 16 21 21 C 1.37092 * 120.00062 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00357 * 359.97438 * 21 20 18 23 23 C 1.38958 * 119.99738 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99991 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99766 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47207 * 90.00367 * 25 23 21 27 27 H 1.48502 * 109.47143 * 209.99893 * 25 23 21 28 28 H 1.48506 * 109.47309 * 329.99828 * 25 23 21 29 29 C 1.47484 * 87.83332 * 27.01161 * 16 15 14 30 30 H 1.08996 * 109.46450 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47202 * 300.00342 * 1 2 3 32 32 H 1.09000 * 109.46746 * 60.00525 * 1 2 3 33 33 H 1.09001 * 109.47416 * 240.00166 * 2 1 3 34 34 H 1.08996 * 109.47456 * 119.99470 * 2 1 3 35 35 H 1.09003 * 109.47149 * 183.72763 * 5 3 2 36 36 H 1.08999 * 109.47053 * 303.72243 * 5 3 2 37 37 H 1.08995 * 109.47290 * 63.72639 * 5 3 2 38 38 H 1.09011 * 109.46960 * 180.02562 * 9 8 6 39 39 H 1.08992 * 109.47108 * 300.00070 * 9 8 6 40 40 H 1.08995 * 109.46997 * 60.00614 * 9 8 6 41 41 H 1.09008 * 109.47456 * 264.54115 * 13 12 10 42 42 H 1.09004 * 109.47022 * 24.53834 * 13 12 10 43 43 H 1.09001 * 109.47547 * 144.54289 * 13 12 10 44 44 H 1.08995 * 113.25621 * 347.05115 * 14 12 10 45 45 H 1.09008 * 113.47512 * 333.04408 * 15 14 12 46 46 H 1.08998 * 113.47720 * 202.57867 * 15 14 12 47 47 H 1.08998 * 109.47027 * 49.99649 * 17 16 15 48 48 H 1.09004 * 109.47083 * 290.00352 * 17 16 15 49 49 H 0.97006 * 119.99670 * 359.97438 * 20 18 17 50 50 H 0.96995 * 119.99438 * 180.02562 * 24 23 21 51 51 H 1.09002 * 113.47621 * 87.75374 * 29 16 15 52 52 H 1.09000 * 113.47343 * 218.22569 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9817 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 3.9964 0.8484 -0.6784 8 8 3.9395 0.8860 1.3865 9 6 5.2052 0.2226 1.3753 10 6 4.0749 2.8593 0.0316 11 8 4.2081 3.5241 1.0372 12 7 4.3830 3.3861 -1.1701 13 6 4.3347 2.5486 -2.3711 14 6 4.7662 4.7961 -1.2754 15 6 6.1724 5.0243 -1.8475 16 7 5.5688 5.0120 -3.1931 17 6 6.1569 6.0555 -4.0434 18 6 5.7023 5.8592 -5.4667 19 8 4.9608 4.9405 -5.7453 20 7 6.1146 6.7078 -6.4291 21 6 5.7005 6.5295 -7.7237 22 1 5.0443 5.7086 -7.9726 23 6 6.1261 7.4042 -8.7160 24 7 6.9258 8.4021 -8.4135 25 14 5.5624 7.1607 -10.4802 26 1 4.3015 7.9122 -10.7052 27 1 6.6088 7.6609 -11.4077 28 1 5.3289 5.7157 -10.7304 29 6 4.3146 5.4794 -2.5738 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 2.0546 3.1322 -1.3364 36 1 2.0144 1.5503 -2.1514 37 1 0.5484 2.1843 -1.3659 38 1 5.4165 -0.1738 2.3686 39 1 5.1801 -0.5957 0.6558 40 1 5.9841 0.9308 1.0931 41 1 5.3310 2.1611 -2.5843 42 1 3.6490 1.7172 -2.2070 43 1 3.9882 3.1441 -3.2158 44 1 4.5535 5.3685 -0.3725 45 1 6.8538 4.1924 -1.6695 46 1 6.6017 5.9879 -1.5730 47 1 7.2441 5.9920 -3.9972 48 1 5.8350 7.0355 -3.6911 49 1 6.7037 7.4454 -6.2055 50 1 7.2225 9.0129 -9.1061 51 1 4.2483 6.5644 -2.4931 52 1 3.4217 5.0331 -3.0114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699717009.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:31 Heat of formation + Delta-G solvation = -65.543078 kcal Electronic energy + Delta-G solvation = -31247.469138 eV Core-core repulsion = 27056.238808 eV Total energy + Delta-G solvation = -4191.230331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.14600 -39.79941 -37.95268 -37.42720 -36.23828 -34.80603 -33.88793 -31.34231 -30.96873 -29.78148 -28.10976 -27.03422 -26.28317 -25.90068 -25.29787 -24.51127 -23.31954 -21.07234 -20.10344 -19.31576 -18.66817 -17.99309 -17.71100 -16.93880 -16.40984 -16.28816 -15.93279 -15.49562 -15.17108 -14.94823 -14.79385 -14.56583 -14.47306 -14.00968 -13.92043 -13.70894 -13.31926 -13.17717 -13.03369 -12.90488 -12.57925 -12.51006 -12.25024 -12.09458 -12.02669 -11.86910 -11.65622 -11.59769 -11.43651 -11.12162 -11.09513 -10.96244 -10.87984 -10.80187 -10.74022 -10.62061 -10.41290 -10.23188 -9.51641 -9.39112 -8.83968 -8.64773 -8.22846 -7.97816 -6.43275 -3.84065 2.40342 2.70832 3.15988 3.24742 3.30310 3.44082 3.88521 3.96809 4.20727 4.26673 4.38228 4.49154 4.55865 4.77560 4.80486 4.84378 4.98187 5.03785 5.09146 5.11362 5.17463 5.19323 5.26356 5.29803 5.34992 5.39145 5.40988 5.42410 5.53721 5.60874 5.63872 5.68288 5.70562 5.72724 5.77962 5.80086 5.85691 5.90420 6.02866 6.10338 6.14138 6.24070 6.45755 6.48116 6.74054 7.08721 7.32412 7.53349 8.04259 8.05064 8.60298 9.16751 9.53188 10.05115 10.74598 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017983 B = 0.002271 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.612649 B =12324.009138 C =13251.507117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.081 4.081 4 H 0.085 0.915 5 C -0.162 4.162 6 C 0.079 3.921 7 H 0.084 0.916 8 O -0.357 6.357 9 C 0.027 3.973 10 C 0.495 3.505 11 O -0.529 6.529 12 N -0.584 5.584 13 C 0.066 3.934 14 C 0.114 3.886 15 C -0.017 4.017 16 N -0.436 5.436 17 C 0.007 3.993 18 C 0.447 3.553 19 O -0.577 6.577 20 N -0.567 5.567 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C -0.005 4.005 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.060 0.940 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.080 0.920 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 -12.996 17.623 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.100 4.100 4 H 0.104 0.896 5 C -0.219 4.219 6 C 0.017 3.983 7 H 0.102 0.898 8 O -0.274 6.274 9 C -0.070 4.070 10 C 0.282 3.718 11 O -0.404 6.404 12 N -0.318 5.318 13 C -0.076 4.076 14 C 0.009 3.991 15 C -0.147 4.147 16 N -0.158 5.158 17 C -0.125 4.125 18 C 0.233 3.767 19 O -0.460 6.460 20 N -0.204 5.204 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.135 4.135 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.116 0.884 44 H 0.129 0.871 45 H 0.104 0.896 46 H 0.095 0.905 47 H 0.106 0.894 48 H 0.078 0.922 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.098 0.902 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.310 -13.724 17.562 23.164 hybrid contribution 0.697 1.357 -0.797 1.721 sum -5.612 -12.367 16.765 21.576 Atomic orbital electron populations 1.21807 0.95470 1.01657 1.02085 1.21528 0.96187 0.95099 1.02496 1.21158 0.90810 0.98106 0.99897 0.89641 1.22220 1.02471 1.01209 0.96036 1.22247 0.97030 0.91089 0.87914 0.89780 1.87993 1.36622 1.72559 1.30274 1.22884 0.85306 0.95830 1.02937 1.21334 0.77514 0.89991 0.82915 1.90682 1.52552 1.62002 1.35181 1.47532 1.66755 1.09875 1.07647 1.22251 1.02230 0.95172 0.87911 1.22040 0.95525 0.82644 0.98863 1.24328 0.97477 1.02131 0.90804 1.68860 1.02749 1.37663 1.06555 1.22514 1.00675 0.94122 0.95187 1.19640 0.85900 0.85326 0.85879 1.90502 1.39478 1.33486 1.82542 1.41881 1.44257 1.26845 1.07421 1.19677 1.27487 1.12724 0.82845 0.87974 1.25260 0.96719 0.95618 1.00412 1.69611 1.34074 1.15970 1.34764 0.85866 0.78128 0.78800 0.81545 1.20437 1.20938 1.19421 1.24283 0.96996 0.99277 0.92924 0.92715 0.92679 0.92339 0.91917 0.91073 0.91624 0.91407 0.91339 0.89151 0.93692 0.93977 0.92332 0.90915 0.88424 0.87125 0.89631 0.90492 0.89439 0.92171 0.77571 0.91896 0.90233 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.67 37.16 0.36 -0.68 16 2 C -0.12 -0.87 5.35 -26.73 -0.14 -1.01 16 3 C -0.08 -0.74 2.20 -90.62 -0.20 -0.94 16 4 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.16 -1.40 7.31 37.16 0.27 -1.13 16 6 C 0.08 0.82 1.65 -27.89 -0.05 0.77 16 7 H 0.08 0.73 5.97 -51.93 -0.31 0.42 16 8 O -0.36 -4.08 9.45 -53.20 -0.50 -4.59 16 9 C 0.03 0.23 10.81 101.05 1.09 1.32 16 10 C 0.50 6.44 5.90 -10.99 -0.06 6.37 16 11 O -0.53 -8.79 16.27 -12.41 -0.20 -8.99 16 12 N -0.58 -7.03 2.34 -173.61 -0.41 -7.44 16 13 C 0.07 0.74 7.94 59.85 0.48 1.22 16 14 C 0.11 1.42 4.64 -67.71 -0.31 1.11 16 15 C -0.02 -0.21 7.31 -7.55 -0.06 -0.27 16 16 N -0.44 -6.67 4.52 -246.10 -1.11 -7.78 16 17 C 0.01 0.12 5.30 -4.98 -0.03 0.09 16 18 C 0.45 10.28 7.85 -10.99 -0.09 10.19 16 19 O -0.58 -15.13 16.01 5.54 0.09 -15.05 16 20 N -0.57 -14.14 5.29 -10.97 -0.06 -14.20 16 21 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 24 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 25 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 C 0.00 -0.07 6.74 -7.55 -0.05 -0.12 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 6.65 -51.93 -0.35 0.04 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.57 7.66 -51.93 -0.40 0.17 16 35 H 0.06 0.67 5.93 -51.93 -0.31 0.36 16 36 H 0.07 0.53 6.25 -51.93 -0.32 0.20 16 37 H 0.07 0.53 6.75 -51.93 -0.35 0.18 16 38 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 40 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 42 H 0.07 0.64 3.22 -51.93 -0.17 0.47 16 43 H 0.10 1.32 5.92 -51.93 -0.31 1.01 16 44 H 0.11 1.40 7.33 -51.93 -0.38 1.02 16 45 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 46 H 0.08 0.84 7.91 -51.93 -0.41 0.43 16 47 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 48 H 0.06 0.91 7.30 -51.93 -0.38 0.53 16 49 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 50 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 51 H 0.08 0.99 7.42 -51.93 -0.39 0.61 16 52 H 0.09 1.34 7.19 -51.93 -0.37 0.96 16 LS Contribution 405.82 15.07 6.12 6.12 Total: -1.00 -33.20 405.82 -7.90 -41.10 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -8.49 Total: 9.60 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 0.97 Total: 9.06 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.85 Total: -53.09 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.62 Total: -28.63 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.20 -7.90 -41.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699717009.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.448 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds