Wall clock time and date at job start Wed Apr 1 2020 00:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47024 * 2 1 4 4 H 1.08999 * 109.47467 * 54.99685 * 3 2 1 5 5 C 1.53005 * 109.46708 * 294.99775 * 3 2 1 6 6 C 1.52997 * 109.47177 * 175.00260 * 3 2 1 7 7 H 1.08999 * 109.47599 * 56.18219 * 6 3 2 8 8 O 1.42898 * 109.46904 * 296.18028 * 6 3 2 9 9 C 1.42904 * 114.00032 * 150.00038 * 8 6 3 10 10 C 1.50697 * 109.47225 * 176.18688 * 6 3 2 11 11 O 1.21279 * 120.00746 * 90.80929 * 10 6 3 12 12 N 1.34780 * 119.99649 * 270.81300 * 10 6 3 13 13 C 1.46498 * 120.00094 * 354.63922 * 12 10 6 14 14 C 1.46502 * 120.00034 * 174.64190 * 12 10 6 15 15 C 1.53512 * 114.17125 * 120.00001 * 14 12 10 16 16 N 1.47481 * 87.93458 * 87.81006 * 15 14 12 17 17 C 1.46900 * 110.99999 * 138.70335 * 16 15 14 18 18 C 1.50696 * 109.47410 * 170.00108 * 17 16 15 19 19 O 1.21296 * 119.99920 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00440 * 179.72187 * 18 17 16 21 21 C 1.37092 * 120.00062 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00357 * 359.97438 * 21 20 18 23 23 C 1.38958 * 119.99738 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99991 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99766 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47207 * 90.00367 * 25 23 21 27 27 H 1.48502 * 109.47143 * 209.99893 * 25 23 21 28 28 H 1.48506 * 109.47309 * 329.99828 * 25 23 21 29 29 C 1.47484 * 87.83332 * 27.01161 * 16 15 14 30 30 H 1.08996 * 109.46450 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47202 * 300.00342 * 1 2 3 32 32 H 1.09000 * 109.46746 * 60.00525 * 1 2 3 33 33 H 1.09001 * 109.47416 * 240.00166 * 2 1 3 34 34 H 1.08996 * 109.47456 * 119.99470 * 2 1 3 35 35 H 1.09003 * 109.47149 * 183.72763 * 5 3 2 36 36 H 1.08999 * 109.47053 * 303.72243 * 5 3 2 37 37 H 1.08995 * 109.47290 * 63.72639 * 5 3 2 38 38 H 1.09011 * 109.46960 * 180.02562 * 9 8 6 39 39 H 1.08992 * 109.47108 * 300.00070 * 9 8 6 40 40 H 1.08995 * 109.46997 * 60.00614 * 9 8 6 41 41 H 1.09008 * 109.47456 * 264.54115 * 13 12 10 42 42 H 1.09004 * 109.47022 * 24.53834 * 13 12 10 43 43 H 1.09001 * 109.47547 * 144.54289 * 13 12 10 44 44 H 1.08995 * 113.25621 * 347.05115 * 14 12 10 45 45 H 1.09008 * 113.47512 * 333.04408 * 15 14 12 46 46 H 1.08998 * 113.47720 * 202.57867 * 15 14 12 47 47 H 1.08998 * 109.47027 * 49.99649 * 17 16 15 48 48 H 1.09004 * 109.47083 * 290.00352 * 17 16 15 49 49 H 0.97006 * 119.99670 * 359.97438 * 20 18 17 50 50 H 0.96995 * 119.99438 * 180.02562 * 24 23 21 51 51 H 1.09002 * 113.47621 * 87.75374 * 29 16 15 52 52 H 1.09000 * 113.47343 * 218.22569 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9817 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 3.9964 0.8484 -0.6784 8 8 3.9395 0.8860 1.3865 9 6 5.2052 0.2226 1.3753 10 6 4.0749 2.8593 0.0316 11 8 4.2081 3.5241 1.0372 12 7 4.3830 3.3861 -1.1701 13 6 4.3347 2.5486 -2.3711 14 6 4.7662 4.7961 -1.2754 15 6 6.1724 5.0243 -1.8475 16 7 5.5688 5.0120 -3.1931 17 6 6.1569 6.0555 -4.0434 18 6 5.7023 5.8592 -5.4667 19 8 4.9608 4.9405 -5.7453 20 7 6.1146 6.7078 -6.4291 21 6 5.7005 6.5295 -7.7237 22 1 5.0443 5.7086 -7.9726 23 6 6.1261 7.4042 -8.7160 24 7 6.9258 8.4021 -8.4135 25 14 5.5624 7.1607 -10.4802 26 1 4.3015 7.9122 -10.7052 27 1 6.6088 7.6609 -11.4077 28 1 5.3289 5.7157 -10.7304 29 6 4.3146 5.4794 -2.5738 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 2.0546 3.1322 -1.3364 36 1 2.0144 1.5503 -2.1514 37 1 0.5484 2.1843 -1.3659 38 1 5.4165 -0.1738 2.3686 39 1 5.1801 -0.5957 0.6558 40 1 5.9841 0.9308 1.0931 41 1 5.3310 2.1611 -2.5843 42 1 3.6490 1.7172 -2.2070 43 1 3.9882 3.1441 -3.2158 44 1 4.5535 5.3685 -0.3725 45 1 6.8538 4.1924 -1.6695 46 1 6.6017 5.9879 -1.5730 47 1 7.2441 5.9920 -3.9972 48 1 5.8350 7.0355 -3.6911 49 1 6.7037 7.4454 -6.2055 50 1 7.2225 9.0129 -9.1061 51 1 4.2483 6.5644 -2.4931 52 1 3.4217 5.0331 -3.0114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699717009.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:31 Heat of formation + Delta-G solvation = -88.392083 kcal Electronic energy + Delta-G solvation = -31248.459946 eV Core-core repulsion = 27056.238808 eV Total energy + Delta-G solvation = -4192.221138 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.18312 -40.88005 -39.62117 -38.47591 -37.01181 -35.99355 -35.70191 -33.26781 -31.95323 -30.85333 -28.86979 -28.10066 -27.42502 -26.89588 -26.62227 -25.47236 -24.56098 -21.91773 -21.08727 -20.91299 -19.90498 -19.67414 -18.73034 -17.85317 -17.77603 -17.30195 -17.12473 -16.71632 -16.44249 -16.33759 -15.79784 -15.73760 -15.55379 -15.39226 -14.87202 -14.78520 -14.64792 -14.33678 -14.10709 -13.84266 -13.63277 -13.44593 -13.35802 -13.27606 -13.08227 -12.96238 -12.85395 -12.65521 -12.52808 -12.40911 -12.32391 -12.18203 -12.05015 -11.91714 -11.85287 -11.57669 -11.47965 -11.47374 -11.38981 -10.41821 -10.27872 -9.98833 -9.74229 -9.66684 -8.45256 -5.93428 1.38369 1.39587 1.42024 1.54467 1.76688 2.08803 2.29152 2.68589 2.80931 3.21236 3.35656 3.35822 3.47208 3.74565 3.76343 3.77247 4.09485 4.13892 4.15488 4.24080 4.28316 4.39466 4.40059 4.42336 4.48863 4.52326 4.55077 4.56534 4.59665 4.64952 4.68293 4.73343 4.80067 4.80737 4.82210 5.03000 5.05845 5.13466 5.17934 5.27259 5.29595 5.41225 5.42276 5.48071 5.53165 5.84498 5.97424 6.07188 6.34767 6.62570 7.04414 7.15136 7.59461 8.15303 8.72280 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017983 B = 0.002271 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.612649 B =12324.009138 C =13251.507117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.076 4.076 4 H 0.066 0.934 5 C -0.159 4.159 6 C 0.081 3.919 7 H 0.105 0.895 8 O -0.378 6.378 9 C 0.021 3.979 10 C 0.495 3.505 11 O -0.570 6.570 12 N -0.581 5.581 13 C 0.073 3.927 14 C 0.118 3.882 15 C -0.007 4.007 16 N -0.458 5.458 17 C 0.020 3.980 18 C 0.446 3.554 19 O -0.613 6.613 20 N -0.578 5.578 21 C -0.329 4.329 22 H 0.079 0.921 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.272 1.272 29 C -0.003 4.003 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.031 0.969 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.084 0.916 49 H 0.395 0.605 50 H 0.276 0.724 51 H 0.093 0.907 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.786 -13.764 17.644 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.096 4.096 4 H 0.085 0.915 5 C -0.216 4.216 6 C 0.019 3.981 7 H 0.123 0.877 8 O -0.295 6.295 9 C -0.075 4.075 10 C 0.284 3.716 11 O -0.449 6.449 12 N -0.313 5.313 13 C -0.069 4.069 14 C 0.013 3.987 15 C -0.136 4.136 16 N -0.180 5.180 17 C -0.112 4.112 18 C 0.233 3.767 19 O -0.498 6.498 20 N -0.216 5.216 21 C -0.459 4.459 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.197 1.197 29 C -0.133 4.133 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.093 0.907 44 H 0.128 0.872 45 H 0.105 0.895 46 H 0.117 0.883 47 H 0.124 0.876 48 H 0.102 0.898 49 H 0.228 0.772 50 H 0.086 0.914 51 H 0.111 0.889 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.198 -14.489 17.588 23.615 hybrid contribution 0.658 1.565 -0.744 1.854 sum -5.540 -12.924 16.844 21.942 Atomic orbital electron populations 1.21807 0.94918 1.02278 1.01976 1.21495 0.96616 0.93725 1.02936 1.21139 0.89934 0.99154 0.99330 0.91542 1.22194 1.03068 1.00217 0.96142 1.22351 0.97725 0.89565 0.88411 0.87709 1.87974 1.37842 1.72795 1.30892 1.23071 0.83889 0.96020 1.04524 1.21857 0.76607 0.90840 0.82345 1.90656 1.54456 1.63271 1.36485 1.47586 1.66081 1.09867 1.07779 1.22216 1.02680 0.95270 0.86689 1.21984 0.95615 0.82903 0.98228 1.24345 0.97262 1.03380 0.88661 1.68839 1.03830 1.37445 1.07912 1.22397 1.01675 0.95828 0.91313 1.20706 0.84341 0.83802 0.87861 1.90474 1.40846 1.34777 1.83744 1.41965 1.44858 1.27594 1.07218 1.19633 1.28539 1.13003 0.84676 0.90308 1.26021 0.96482 0.95058 1.03881 1.69673 1.34387 1.16289 1.36037 0.84952 0.78094 0.78504 0.76953 1.19707 1.19732 1.19690 1.24304 0.95883 1.00074 0.93038 0.91727 0.93224 0.92054 0.90551 0.91497 0.93463 0.90300 0.90439 0.87854 0.91439 0.95014 0.92407 0.88522 0.90651 0.87151 0.89536 0.88252 0.87610 0.89809 0.77152 0.91425 0.88900 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.67 71.98 0.70 -1.14 16 2 C -0.11 -1.47 5.35 30.60 0.16 -1.30 16 3 C -0.08 -1.33 2.20 -10.79 -0.02 -1.35 16 4 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 5 C -0.16 -2.59 7.31 71.98 0.53 -2.06 16 6 C 0.08 1.60 1.65 29.85 0.05 1.65 16 7 H 0.11 1.59 5.97 -2.39 -0.01 1.58 16 8 O -0.38 -8.29 9.45 -131.80 -1.25 -9.53 16 9 C 0.02 0.33 10.81 113.37 1.23 1.55 16 10 C 0.49 12.67 5.90 87.66 0.52 13.19 16 11 O -0.57 -19.09 16.27 14.15 0.23 -18.86 16 12 N -0.58 -13.62 2.34 -821.58 -1.92 -15.54 16 13 C 0.07 1.57 7.94 127.77 1.01 2.58 16 14 C 0.12 2.83 4.64 45.45 0.21 3.04 16 15 C -0.01 -0.15 7.31 83.57 0.61 0.46 16 16 N -0.46 -13.47 4.52 -932.51 -4.22 -17.69 16 17 C 0.02 0.63 5.30 85.56 0.45 1.09 16 18 C 0.45 20.50 7.85 87.66 0.69 21.19 16 19 O -0.61 -32.71 16.01 -3.08 -0.05 -32.76 16 20 N -0.58 -29.11 5.29 -306.99 -1.62 -30.73 16 21 C -0.33 -18.40 9.68 84.04 0.81 -17.59 16 22 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 23 C -0.02 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.92 -49.48 13.05 21.67 0.28 -49.20 16 25 Si 0.99 42.52 29.55 68.60 2.03 44.55 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 29 C 0.00 -0.09 6.74 83.57 0.56 0.48 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.70 6.65 -2.39 -0.02 0.68 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 35 H 0.05 0.95 5.93 -2.39 -0.01 0.93 16 36 H 0.08 1.09 6.25 -2.39 -0.01 1.07 16 37 H 0.08 1.12 6.75 -2.39 -0.02 1.10 16 38 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 40 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.10 1.55 3.22 -2.38 -0.01 1.55 16 43 H 0.07 2.03 5.92 -2.39 -0.01 2.01 16 44 H 0.11 2.71 7.33 -2.39 -0.02 2.69 16 45 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.10 1.87 7.91 -2.39 -0.02 1.85 16 47 H 0.11 3.06 8.08 -2.39 -0.02 3.04 16 48 H 0.08 2.34 7.30 -2.38 -0.02 2.32 16 49 H 0.39 18.92 7.90 -92.70 -0.73 18.19 16 50 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 51 H 0.09 2.18 7.42 -2.39 -0.02 2.16 16 52 H 0.08 2.28 7.19 -2.39 -0.02 2.26 16 Total: -1.00 -72.55 405.82 1.66 -70.89 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: 0.20 Total: 37.43 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 7.98 Total: 21.44 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -7.48 Total: -113.16 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -1.06 Total: -61.16 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -72.55 1.66 -70.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699717009.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.500 kcal (2) G-P(sol) polarization free energy of solvation -72.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds