Wall clock time and date at job start Wed Apr 1 2020 00:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47166 * 2 1 4 4 H 1.08998 * 109.46505 * 304.99766 * 3 2 1 5 5 C 1.52997 * 109.47127 * 64.99895 * 3 2 1 6 6 C 1.52992 * 109.47223 * 185.00400 * 3 2 1 7 7 C 1.53002 * 109.47278 * 175.00003 * 6 3 2 8 8 C 1.50701 * 109.47206 * 179.97438 * 7 6 3 9 9 O 1.21285 * 120.00127 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99814 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99913 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47304 * 180.02562 * 11 10 8 13 13 O 1.42899 * 112.93834 * 53.42668 * 12 11 10 14 14 C 1.53937 * 113.72853 * 281.72568 * 12 11 10 15 15 N 1.47960 * 86.17787 * 221.91633 * 14 12 11 16 16 C 1.46898 * 110.99913 * 137.58447 * 15 14 12 17 17 C 1.50693 * 109.47341 * 70.64253 * 16 15 14 18 18 O 1.21288 * 120.00066 * 359.97438 * 17 16 15 19 19 N 1.34781 * 120.00365 * 180.02562 * 17 16 15 20 20 C 1.37099 * 120.00274 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99624 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99863 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00082 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99701 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47107 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.46985 * 120.00465 * 24 22 20 27 27 H 1.48497 * 109.47154 * 240.00523 * 24 22 20 28 28 C 1.47969 * 90.76164 * 24.69031 * 15 14 12 29 29 H 1.08998 * 109.46865 * 300.00077 * 1 2 3 30 30 H 1.08997 * 109.47108 * 60.00222 * 1 2 3 31 31 H 1.09002 * 109.46738 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47132 * 239.99951 * 2 1 3 33 33 H 1.08996 * 109.47552 * 120.00073 * 2 1 3 34 34 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 36 36 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 37 37 H 1.09002 * 109.46906 * 294.99936 * 6 3 2 38 38 H 1.09006 * 109.47717 * 54.99311 * 6 3 2 39 39 H 1.09000 * 109.46593 * 299.99796 * 7 6 3 40 40 H 1.08998 * 109.46891 * 59.99794 * 7 6 3 41 41 H 0.97001 * 120.00047 * 0.02562 * 10 8 7 42 42 H 1.09002 * 109.46891 * 300.00089 * 11 10 8 43 43 H 1.08998 * 109.47407 * 59.99419 * 11 10 8 44 44 H 0.96707 * 113.99982 * 309.67459 * 13 12 11 45 45 H 1.08997 * 113.76286 * 336.23772 * 14 12 11 46 46 H 1.09003 * 113.76080 * 107.60571 * 14 12 11 47 47 H 1.08996 * 109.47257 * 190.64647 * 16 15 14 48 48 H 1.09004 * 109.47097 * 310.63723 * 16 15 14 49 49 H 0.97006 * 119.99575 * 359.97438 * 19 17 16 50 50 H 0.97002 * 119.99912 * 180.02562 * 23 22 20 51 51 H 1.08994 * 113.75692 * 220.98652 * 28 15 14 52 52 H 1.08996 * 113.85629 * 89.63986 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4444 -0.1258 7 6 4.0645 2.8851 -0.2512 8 6 5.5664 2.8869 -0.3745 9 8 6.1771 1.8391 -0.3637 10 7 6.2310 4.0530 -0.4979 11 6 7.6910 4.0547 -0.6183 12 6 8.1907 5.4954 -0.7436 13 8 7.7209 6.3413 0.3080 14 6 8.0102 6.0935 -2.1505 15 7 9.3632 6.6656 -1.9729 16 6 10.1582 6.5279 -3.2004 17 6 9.6190 7.4591 -4.2554 18 8 8.6658 8.1675 -4.0091 19 7 10.1952 7.5041 -5.4730 20 6 9.7043 8.3509 -6.4329 21 1 8.8560 8.9823 -6.2132 22 6 10.2987 8.3976 -7.6879 23 7 11.3311 7.6298 -7.9549 24 14 9.6293 9.5510 -8.9961 25 1 8.4710 10.3018 -8.4483 26 1 10.6904 10.5067 -9.4032 27 1 9.1946 8.7617 -10.1764 28 6 9.7048 5.6061 -0.9981 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.9982 3.1544 1.3071 35 1 2.0699 1.5876 2.1491 36 1 0.5489 2.1253 1.3969 37 1 4.0029 0.9836 0.7595 38 1 3.8571 0.8800 -1.0114 39 1 3.6263 3.3458 -1.1366 40 1 3.7723 3.4493 0.6344 41 1 5.7426 4.8910 -0.5069 42 1 8.1292 3.5943 0.2672 43 1 7.9833 3.4901 -1.5036 44 1 6.7657 6.2963 0.4519 45 1 7.9498 5.3458 -2.9412 46 1 7.2211 6.8430 -2.2111 47 1 11.1976 6.7798 -2.9903 48 1 10.0988 5.5000 -3.5583 49 1 10.9573 6.9372 -5.6701 50 1 11.7463 7.6626 -8.8310 51 1 10.2695 5.9661 -0.1383 52 1 10.1404 4.7151 -1.4501 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699922566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:59 Heat of formation + Delta-G solvation = -106.593993 kcal Electronic energy + Delta-G solvation = -29481.483819 eV Core-core repulsion = 25288.473387 eV Total energy + Delta-G solvation = -4193.010432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.77288 -39.76372 -37.98338 -37.48085 -35.85125 -34.47706 -33.90102 -32.71156 -31.31082 -30.39729 -29.25294 -27.58816 -26.20628 -25.99484 -24.84925 -23.11053 -22.24513 -20.71982 -20.24398 -19.99801 -19.22095 -18.00667 -17.74913 -16.70416 -16.46119 -16.20114 -15.78319 -15.54211 -15.41615 -15.20981 -14.79939 -14.68142 -14.33344 -14.10914 -13.80930 -13.77324 -13.58679 -13.42482 -13.13406 -13.07472 -12.81093 -12.37214 -12.29432 -12.12240 -12.07718 -11.99929 -11.89775 -11.51345 -11.33867 -11.30415 -11.06138 -10.97176 -10.91391 -10.82417 -10.77397 -10.36144 -10.24891 -10.07788 -9.96597 -9.53430 -9.41132 -8.68284 -8.25600 -7.98464 -6.43736 -3.84605 2.38185 2.79783 3.14624 3.25323 3.32358 3.65992 3.87116 3.97515 4.17888 4.20650 4.30797 4.36436 4.46710 4.52771 4.66868 4.79959 4.85460 4.93032 5.00460 5.09006 5.13194 5.16481 5.21685 5.23412 5.27337 5.37392 5.43147 5.47260 5.55924 5.61354 5.62617 5.64140 5.67408 5.69602 5.70623 5.76434 5.82266 5.86178 6.01563 6.03738 6.08819 6.11913 6.22792 6.56328 7.08963 7.14138 7.40973 7.53336 7.92919 8.03657 8.59093 9.15900 9.51850 10.03383 10.74059 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012669 B = 0.001841 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.575037 B =15201.915400 C =16577.021627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.094 4.094 4 H 0.071 0.929 5 C -0.152 4.152 6 C -0.099 4.099 7 C -0.143 4.143 8 C 0.513 3.487 9 O -0.539 6.539 10 N -0.732 5.732 11 C 0.101 3.899 12 C 0.088 3.912 13 O -0.521 6.521 14 C 0.000 4.000 15 N -0.440 5.440 16 C 0.007 3.993 17 C 0.444 3.556 18 O -0.579 6.579 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.017 3.983 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.399 0.601 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.371 0.629 45 H 0.073 0.927 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.055 0.945 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.100 0.900 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.311 -13.766 17.628 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.113 4.113 4 H 0.089 0.911 5 C -0.209 4.209 6 C -0.137 4.137 7 C -0.183 4.183 8 C 0.300 3.700 9 O -0.415 6.415 10 N -0.385 5.385 11 C -0.024 4.024 12 C 0.045 3.955 13 O -0.326 6.326 14 C -0.129 4.129 15 N -0.163 5.163 16 C -0.125 4.125 17 C 0.229 3.771 18 O -0.463 6.463 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.112 4.112 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.233 0.767 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.218 0.782 45 H 0.091 0.909 46 H 0.117 0.883 47 H 0.111 0.889 48 H 0.073 0.927 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.118 0.882 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.655 -13.205 17.815 26.580 hybrid contribution -0.437 -0.303 -1.365 1.465 sum -15.093 -13.508 16.449 26.093 Atomic orbital electron populations 1.21828 0.95926 1.01525 1.01871 1.21566 0.95802 0.96236 1.02176 1.21209 0.95102 0.96432 0.98528 0.91054 1.21958 1.01370 1.00416 0.97166 1.21400 0.94306 0.94530 1.03488 1.21772 0.91458 1.00532 1.04514 1.20805 0.90375 0.83284 0.75501 1.90717 1.70083 1.31349 1.49400 1.45960 1.07727 1.09198 1.75622 1.22020 0.80244 0.96793 1.03326 1.23052 0.96457 0.87502 0.88477 1.86638 1.27097 1.65475 1.53366 1.24515 0.95321 0.98450 0.94635 1.68476 1.02006 1.38141 1.07635 1.22512 0.99538 0.98630 0.91820 1.19650 0.86811 0.87228 0.83426 1.90519 1.29654 1.45803 1.80299 1.41877 1.30145 1.37854 1.10205 1.19747 1.14298 1.17880 0.90922 0.87883 1.25264 0.96135 0.98090 0.98465 1.69617 1.21979 1.39244 1.23414 0.85800 0.78863 0.79642 0.80040 1.19233 1.20710 1.20770 1.24118 0.93462 0.95406 0.98215 0.92531 0.92771 0.92918 0.91911 0.91970 0.92550 0.92659 0.92483 0.91181 0.91135 0.88686 0.88614 0.76651 0.90380 0.90179 0.78178 0.90852 0.88275 0.88904 0.92749 0.77492 0.91906 0.88152 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.67 37.16 0.36 -0.45 16 2 C -0.12 -0.71 5.40 -26.73 -0.14 -0.85 16 3 C -0.09 -0.54 2.39 -90.62 -0.22 -0.76 16 4 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 5 C -0.15 -0.77 8.70 37.16 0.32 -0.45 16 6 C -0.10 -0.72 3.97 -26.73 -0.11 -0.83 16 7 C -0.14 -0.92 5.46 -27.88 -0.15 -1.07 16 8 C 0.51 5.03 7.83 -10.98 -0.09 4.94 16 9 O -0.54 -7.51 15.98 5.55 0.09 -7.42 16 10 N -0.73 -6.11 5.34 -60.29 -0.32 -6.43 16 11 C 0.10 1.01 5.28 -4.04 -0.02 0.99 16 12 C 0.09 1.00 1.52 -89.69 -0.14 0.86 16 13 O -0.52 -6.00 13.50 -35.23 -0.48 -6.48 16 14 C 0.00 0.00 6.16 -2.77 -0.02 -0.02 16 15 N -0.44 -7.36 5.95 -239.66 -1.43 -8.79 16 16 C 0.01 0.12 5.31 -4.98 -0.03 0.10 16 17 C 0.44 10.51 7.59 -10.99 -0.08 10.42 16 18 O -0.58 -15.68 15.12 5.55 0.08 -15.59 16 19 N -0.56 -14.32 5.29 -10.97 -0.06 -14.38 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 24 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 C 0.02 0.22 7.37 -2.77 -0.02 0.20 16 29 H 0.06 0.28 6.56 -51.93 -0.34 -0.07 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.25 6.57 -51.93 -0.34 -0.09 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.27 6.57 -51.93 -0.34 -0.07 16 37 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 38 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.44 6.57 -51.93 -0.34 0.10 16 41 H 0.40 2.33 7.31 -40.82 -0.30 2.03 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 44 H 0.37 2.72 7.61 45.56 0.35 3.06 16 45 H 0.07 1.08 7.67 -51.93 -0.40 0.68 16 46 H 0.10 1.62 8.09 -51.93 -0.42 1.20 16 47 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 48 H 0.05 0.85 7.69 -51.93 -0.40 0.45 16 49 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 50 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 51 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 52 H 0.08 0.87 7.75 -51.93 -0.40 0.46 16 LS Contribution 418.34 15.07 6.30 6.30 Total: -1.00 -35.10 418.34 -8.93 -44.02 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -8.26 Total: 11.45 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -0.57 Total: 5.09 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -1.08 Total: -53.39 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.30 Total: -29.49 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.10 -8.93 -44.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699922566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.569 kcal (2) G-P(sol) polarization free energy of solvation -35.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds