Wall clock time and date at job start Wed Apr 1 2020 00:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47166 * 2 1 4 4 H 1.08998 * 109.46505 * 304.99766 * 3 2 1 5 5 C 1.52997 * 109.47127 * 64.99895 * 3 2 1 6 6 C 1.52992 * 109.47223 * 185.00400 * 3 2 1 7 7 C 1.53002 * 109.47278 * 175.00003 * 6 3 2 8 8 C 1.50701 * 109.47206 * 179.97438 * 7 6 3 9 9 O 1.21285 * 120.00127 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99814 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99913 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47304 * 180.02562 * 11 10 8 13 13 O 1.42899 * 112.93834 * 53.42668 * 12 11 10 14 14 C 1.53937 * 113.72853 * 281.72568 * 12 11 10 15 15 N 1.47960 * 86.17787 * 221.91633 * 14 12 11 16 16 C 1.46898 * 110.99913 * 137.58447 * 15 14 12 17 17 C 1.50693 * 109.47341 * 70.64253 * 16 15 14 18 18 O 1.21288 * 120.00066 * 359.97438 * 17 16 15 19 19 N 1.34781 * 120.00365 * 180.02562 * 17 16 15 20 20 C 1.37099 * 120.00274 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99624 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99863 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00082 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99701 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47107 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.46985 * 120.00465 * 24 22 20 27 27 H 1.48497 * 109.47154 * 240.00523 * 24 22 20 28 28 C 1.47969 * 90.76164 * 24.69031 * 15 14 12 29 29 H 1.08998 * 109.46865 * 300.00077 * 1 2 3 30 30 H 1.08997 * 109.47108 * 60.00222 * 1 2 3 31 31 H 1.09002 * 109.46738 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47132 * 239.99951 * 2 1 3 33 33 H 1.08996 * 109.47552 * 120.00073 * 2 1 3 34 34 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 36 36 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 37 37 H 1.09002 * 109.46906 * 294.99936 * 6 3 2 38 38 H 1.09006 * 109.47717 * 54.99311 * 6 3 2 39 39 H 1.09000 * 109.46593 * 299.99796 * 7 6 3 40 40 H 1.08998 * 109.46891 * 59.99794 * 7 6 3 41 41 H 0.97001 * 120.00047 * 0.02562 * 10 8 7 42 42 H 1.09002 * 109.46891 * 300.00089 * 11 10 8 43 43 H 1.08998 * 109.47407 * 59.99419 * 11 10 8 44 44 H 0.96707 * 113.99982 * 309.67459 * 13 12 11 45 45 H 1.08997 * 113.76286 * 336.23772 * 14 12 11 46 46 H 1.09003 * 113.76080 * 107.60571 * 14 12 11 47 47 H 1.08996 * 109.47257 * 190.64647 * 16 15 14 48 48 H 1.09004 * 109.47097 * 310.63723 * 16 15 14 49 49 H 0.97006 * 119.99575 * 359.97438 * 19 17 16 50 50 H 0.97002 * 119.99912 * 180.02562 * 23 22 20 51 51 H 1.08994 * 113.75692 * 220.98652 * 28 15 14 52 52 H 1.08996 * 113.85629 * 89.63986 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4444 -0.1258 7 6 4.0645 2.8851 -0.2512 8 6 5.5664 2.8869 -0.3745 9 8 6.1771 1.8391 -0.3637 10 7 6.2310 4.0530 -0.4979 11 6 7.6910 4.0547 -0.6183 12 6 8.1907 5.4954 -0.7436 13 8 7.7209 6.3413 0.3080 14 6 8.0102 6.0935 -2.1505 15 7 9.3632 6.6656 -1.9729 16 6 10.1582 6.5279 -3.2004 17 6 9.6190 7.4591 -4.2554 18 8 8.6658 8.1675 -4.0091 19 7 10.1952 7.5041 -5.4730 20 6 9.7043 8.3509 -6.4329 21 1 8.8560 8.9823 -6.2132 22 6 10.2987 8.3976 -7.6879 23 7 11.3311 7.6298 -7.9549 24 14 9.6293 9.5510 -8.9961 25 1 8.4710 10.3018 -8.4483 26 1 10.6904 10.5067 -9.4032 27 1 9.1946 8.7617 -10.1764 28 6 9.7048 5.6061 -0.9981 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.9982 3.1544 1.3071 35 1 2.0699 1.5876 2.1491 36 1 0.5489 2.1253 1.3969 37 1 4.0029 0.9836 0.7595 38 1 3.8571 0.8800 -1.0114 39 1 3.6263 3.3458 -1.1366 40 1 3.7723 3.4493 0.6344 41 1 5.7426 4.8910 -0.5069 42 1 8.1292 3.5943 0.2672 43 1 7.9833 3.4901 -1.5036 44 1 6.7657 6.2963 0.4519 45 1 7.9498 5.3458 -2.9412 46 1 7.2211 6.8430 -2.2111 47 1 11.1976 6.7798 -2.9903 48 1 10.0988 5.5000 -3.5583 49 1 10.9573 6.9372 -5.6701 50 1 11.7463 7.6626 -8.8310 51 1 10.2695 5.9661 -0.1383 52 1 10.1404 4.7151 -1.4501 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699922566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:58 Heat of formation + Delta-G solvation = -135.982255 kcal Electronic energy + Delta-G solvation = -29482.758190 eV Core-core repulsion = 25288.473387 eV Total energy + Delta-G solvation = -4194.284803 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.82265 -40.67806 -39.72437 -38.02949 -36.93744 -35.90754 -35.31907 -33.33007 -33.25706 -31.57628 -29.88448 -28.59362 -27.27805 -26.97620 -26.27471 -24.10221 -23.12648 -21.46775 -21.04107 -20.95068 -20.72566 -19.90727 -18.66119 -17.89693 -17.55873 -17.10638 -16.87079 -16.72205 -16.56141 -16.28555 -16.00478 -15.66524 -15.53156 -15.23129 -15.15864 -14.65690 -14.48193 -14.30132 -14.13485 -14.07701 -13.70342 -13.51628 -13.45225 -13.25540 -12.97615 -12.94340 -12.78580 -12.63167 -12.48189 -12.47307 -12.42410 -12.13436 -11.85513 -11.81997 -11.52584 -11.46469 -11.38674 -11.28893 -10.97664 -10.88487 -10.36249 -10.20990 -10.03358 -9.69815 -8.48550 -5.97355 1.35097 1.40522 1.54612 1.62638 2.02378 2.07278 2.27166 2.66693 2.92332 3.18054 3.24284 3.32727 3.56167 3.73768 3.82233 3.97831 4.00530 4.16819 4.19625 4.27292 4.32771 4.39979 4.43327 4.46019 4.54660 4.57602 4.61036 4.65375 4.70157 4.74098 4.76664 4.80287 4.91971 4.96656 5.09925 5.13107 5.20146 5.24418 5.26464 5.27345 5.35478 5.37642 5.39905 5.59051 5.60165 5.83707 6.03407 6.43894 6.57943 6.68643 7.10756 7.20525 7.53610 8.09154 8.69052 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012669 B = 0.001841 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.575037 B =15201.915400 C =16577.021627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.089 4.089 4 H 0.077 0.923 5 C -0.151 4.151 6 C -0.096 4.096 7 C -0.136 4.136 8 C 0.510 3.490 9 O -0.585 6.585 10 N -0.722 5.722 11 C 0.110 3.890 12 C 0.114 3.886 13 O -0.535 6.535 14 C -0.005 4.005 15 N -0.474 5.474 16 C 0.019 3.981 17 C 0.440 3.560 18 O -0.618 6.618 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.270 1.270 28 C 0.020 3.980 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.413 0.587 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.389 0.611 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.109 0.891 48 H 0.080 0.920 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.106 0.894 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.915 -13.869 18.204 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.107 4.107 4 H 0.095 0.905 5 C -0.208 4.208 6 C -0.134 4.134 7 C -0.175 4.175 8 C 0.299 3.701 9 O -0.465 6.465 10 N -0.376 5.376 11 C -0.015 4.015 12 C 0.071 3.929 13 O -0.342 6.342 14 C -0.134 4.134 15 N -0.197 5.197 16 C -0.112 4.112 17 C 0.228 3.772 18 O -0.504 6.504 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.109 4.109 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.250 0.750 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.239 0.761 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.127 0.873 48 H 0.098 0.902 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.125 0.875 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.267 -13.300 18.407 27.364 hybrid contribution -0.261 -0.264 -1.488 1.533 sum -15.528 -13.565 16.919 26.672 Atomic orbital electron populations 1.21813 0.95216 1.01748 1.02179 1.21582 0.96422 0.96392 1.01637 1.21164 0.93827 0.96442 0.99296 0.90501 1.21956 1.01737 1.00776 0.96348 1.21339 0.95364 0.94846 1.01882 1.21810 0.88884 1.00363 1.06481 1.21391 0.91634 0.82699 0.74371 1.90701 1.71189 1.32972 1.51621 1.45883 1.07212 1.09692 1.74798 1.21828 0.81174 0.95368 1.03118 1.22693 0.95855 0.87819 0.86511 1.86605 1.28978 1.65663 1.52916 1.24495 0.93991 0.97936 0.96966 1.68454 1.02838 1.40775 1.07647 1.22402 1.00072 0.98106 0.90628 1.20708 0.85773 0.87004 0.83761 1.90486 1.31321 1.47503 1.81048 1.41947 1.30536 1.37941 1.10673 1.19692 1.14754 1.19271 0.92551 0.90358 1.26040 0.96151 0.99266 0.99806 1.69675 1.22382 1.39833 1.24198 0.84870 0.78181 0.77820 0.77455 1.19799 1.19631 1.19534 1.24246 0.94333 0.95078 0.97229 0.91986 0.92642 0.92807 0.92688 0.92360 0.91522 0.93081 0.91951 0.92612 0.93082 0.86897 0.86085 0.75027 0.90163 0.90825 0.76089 0.90990 0.90569 0.87264 0.90206 0.77028 0.91293 0.87548 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.67 71.98 0.70 -0.74 16 2 C -0.12 -1.39 5.40 30.60 0.17 -1.22 16 3 C -0.09 -0.92 2.39 -10.79 -0.03 -0.95 16 4 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 5 C -0.15 -1.25 8.70 71.98 0.63 -0.62 16 6 C -0.10 -1.34 3.97 30.59 0.12 -1.22 16 7 C -0.14 -1.50 5.46 29.85 0.16 -1.34 16 8 C 0.51 9.39 7.83 87.66 0.69 10.07 16 9 O -0.58 -16.18 15.98 -3.05 -0.05 -16.23 16 10 N -0.72 -10.81 5.34 -463.05 -2.47 -13.28 16 11 C 0.11 2.01 5.28 86.38 0.46 2.47 16 12 C 0.11 2.40 1.52 -10.15 -0.02 2.39 16 13 O -0.53 -11.27 13.50 -148.98 -2.01 -13.28 16 14 C 0.00 -0.13 6.16 86.41 0.53 0.40 16 15 N -0.47 -15.37 5.95 -915.36 -5.44 -20.81 16 16 C 0.02 0.67 5.31 85.56 0.45 1.13 16 17 C 0.44 21.09 7.59 87.65 0.67 21.76 16 18 O -0.62 -34.31 15.12 -3.06 -0.05 -34.36 16 19 N -0.57 -29.57 5.29 -306.99 -1.62 -31.20 16 20 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 21 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 23 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 24 Si 0.99 42.97 29.55 68.60 2.03 45.00 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 C 0.02 0.45 7.37 86.40 0.64 1.08 16 29 H 0.06 0.52 6.56 -2.39 -0.02 0.50 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.41 6.57 -2.39 -0.02 0.40 16 35 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.06 0.46 6.57 -2.38 -0.02 0.45 16 37 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 38 H 0.05 0.90 8.10 -2.38 -0.02 0.88 16 39 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.12 0.75 6.57 -2.39 -0.02 0.74 16 41 H 0.41 3.92 7.31 -92.71 -0.68 3.24 16 42 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.49 8.05 -2.39 -0.02 1.47 16 44 H 0.39 4.83 7.61 -74.05 -0.56 4.27 16 45 H 0.07 2.07 7.67 -2.39 -0.02 2.05 16 46 H 0.08 2.52 8.09 -2.39 -0.02 2.51 16 47 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 48 H 0.08 2.34 7.69 -2.38 -0.02 2.33 16 49 H 0.40 19.37 7.90 -92.70 -0.73 18.64 16 50 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 51 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 52 H 0.11 1.92 7.75 -2.39 -0.02 1.90 16 Total: -1.00 -77.29 418.34 -3.93 -81.21 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -1.03 Total: 37.55 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 6.44 Total: 14.80 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -9.26 Total: -114.68 kcal Atomic # 8 Polarization: -61.77 SS G_CDS: -2.11 Total: -63.88 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -77.29 -3.93 -81.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699922566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.768 kcal (2) G-P(sol) polarization free energy of solvation -77.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds