Wall clock time and date at job start Wed Apr 1 2020 00:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.47047 * 2 1 4 4 C 1.50695 * 109.46781 * 119.99836 * 2 1 3 5 5 O 1.21282 * 120.00139 * 336.32032 * 4 2 1 6 6 N 1.34778 * 120.00004 * 156.32518 * 4 2 1 7 7 C 1.46927 * 120.62867 * 354.15018 * 6 4 2 8 8 C 1.53187 * 108.77334 * 126.41584 * 7 6 4 9 9 C 1.53037 * 109.31783 * 54.63676 * 8 7 6 10 10 C 1.53047 * 109.53477 * 298.63291 * 9 8 7 11 11 H 1.09001 * 109.49737 * 301.38413 * 10 9 8 12 12 N 1.46896 * 109.49729 * 181.31892 * 10 9 8 13 13 C 1.46894 * 111.00166 * 62.80532 * 12 10 9 14 14 C 1.53004 * 109.46884 * 65.35270 * 13 12 10 15 15 O 1.42895 * 109.47352 * 72.77023 * 14 13 12 16 16 C 1.46897 * 110.99952 * 186.76468 * 12 10 9 17 17 C 1.50697 * 109.47298 * 171.14672 * 16 12 10 18 18 O 1.21290 * 120.00032 * 0.02562 * 17 16 12 19 19 N 1.34779 * 120.00472 * 179.97438 * 17 16 12 20 20 C 1.37093 * 120.00406 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00032 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00382 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99757 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00478 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47238 * 179.97438 * 24 22 20 26 26 H 1.48496 * 109.47190 * 300.00339 * 24 22 20 27 27 H 1.48500 * 109.46841 * 60.00108 * 24 22 20 28 28 C 1.46928 * 120.63244 * 174.17148 * 6 4 2 29 29 H 1.08995 * 109.47097 * 185.00659 * 1 2 3 30 30 H 1.09004 * 109.46874 * 305.00345 * 1 2 3 31 31 H 1.08999 * 109.46850 * 65.00522 * 1 2 3 32 32 H 1.09000 * 109.46939 * 239.99761 * 2 1 3 33 33 H 1.09006 * 109.46841 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46919 * 299.99473 * 3 2 1 35 35 H 1.08997 * 109.47639 * 59.99570 * 3 2 1 36 36 H 1.09000 * 109.58518 * 6.62588 * 7 6 4 37 37 H 1.09008 * 109.58345 * 246.19877 * 7 6 4 38 38 H 1.09000 * 109.49932 * 294.67835 * 8 7 6 39 39 H 1.09002 * 109.49403 * 174.58711 * 8 7 6 40 40 H 1.08996 * 109.46352 * 178.61645 * 9 8 7 41 41 H 1.09003 * 109.46287 * 58.65063 * 9 8 7 42 42 H 1.09005 * 109.46991 * 185.34620 * 13 12 10 43 43 H 1.08996 * 109.47562 * 305.34761 * 13 12 10 44 44 H 1.09003 * 109.46979 * 192.76757 * 14 13 12 45 45 H 1.08994 * 109.46939 * 312.76635 * 14 13 12 46 46 H 0.96698 * 114.00070 * 184.96095 * 15 14 13 47 47 H 1.09005 * 109.47611 * 51.14513 * 16 12 10 48 48 H 1.09003 * 109.47016 * 291.14764 * 16 12 10 49 49 H 0.97008 * 119.99253 * 0.02562 * 19 17 16 50 50 H 0.97001 * 119.99857 * 359.97438 * 23 22 20 51 51 H 1.08997 * 109.58586 * 113.80015 * 28 6 4 52 52 H 1.09001 * 109.58760 * 353.37516 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.3276 -0.7912 2.2142 6 7 3.2648 -1.2558 1.2378 7 6 4.0805 -1.2789 0.0160 8 6 5.4428 -0.6480 0.3208 9 6 6.0776 -1.3659 1.5139 10 6 5.1832 -1.2019 2.7449 11 1 5.0531 -0.1416 2.9614 12 7 5.8087 -1.8644 3.8972 13 6 7.0941 -1.2368 4.2314 14 6 6.8532 0.1983 4.7043 15 8 6.2745 0.1786 6.0107 16 6 4.9066 -1.8668 5.0566 17 6 5.4863 -2.7364 6.1423 18 8 6.5468 -3.2986 5.9676 19 7 4.8268 -2.8888 7.3078 20 6 5.3544 -3.6795 8.2956 21 1 6.2987 -4.1801 8.1401 22 6 4.6743 -3.8371 9.4970 23 7 3.5250 -3.2284 9.6861 24 14 5.3927 -4.9151 10.8428 25 1 4.4811 -4.9170 12.0151 26 1 5.5501 -6.3017 10.3352 27 1 6.7185 -4.3829 11.2483 28 6 3.8180 -1.8391 2.4677 29 1 -0.3633 -1.0237 0.0897 30 1 -0.3633 0.5895 0.8418 31 1 -0.3633 0.4342 -0.9314 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 3.5810 -0.7092 -0.7676 37 1 4.2200 -2.3094 -0.3108 38 1 5.3098 0.4072 0.5597 39 1 6.0916 -0.7453 -0.5497 40 1 7.0579 -0.9350 1.7174 41 1 6.1876 -2.4256 1.2836 42 1 7.5798 -1.8042 5.0254 43 1 7.7336 -1.2261 3.3489 44 1 7.8016 0.7347 4.7351 45 1 6.1747 0.6992 4.0139 46 1 6.0245 1.0514 6.3433 47 1 3.9334 -2.2573 4.7590 48 1 4.7912 -0.8489 5.4292 49 1 3.9788 -2.4389 7.4476 50 1 3.1517 -2.6690 8.9872 51 1 3.9360 -2.9152 2.3408 52 1 3.1453 -1.6391 3.3017 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707208427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:52 Heat of formation + Delta-G solvation = -105.507762 kcal Electronic energy + Delta-G solvation = -32166.562499 eV Core-core repulsion = 27973.599169 eV Total energy + Delta-G solvation = -4192.963330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.74020 -39.30419 -37.72576 -36.90015 -35.34223 -34.71225 -33.99323 -32.57854 -30.94147 -30.53412 -29.05440 -27.51538 -26.27854 -25.73379 -23.96684 -23.63560 -22.48178 -21.78678 -19.89581 -19.10948 -18.86722 -17.85987 -17.66933 -17.39282 -16.53695 -16.24899 -15.60764 -15.47447 -15.17695 -14.75326 -14.62179 -14.24800 -14.13605 -13.96939 -13.77436 -13.61060 -13.43130 -13.41641 -13.05857 -12.76234 -12.68237 -12.43894 -12.24223 -12.16524 -11.91335 -11.65600 -11.54451 -11.44240 -11.40655 -11.20072 -11.08649 -11.03846 -10.96349 -10.79092 -10.42892 -10.11893 -9.80254 -9.73518 -9.67794 -9.31681 -8.81576 -8.31662 -7.85722 -7.70948 -6.58458 -3.69832 2.45012 2.74065 3.41834 3.42833 3.63645 3.93424 4.09229 4.16384 4.39319 4.43290 4.46657 4.54843 4.59487 4.66710 4.69397 4.82366 4.93877 5.01567 5.13847 5.17175 5.24916 5.28945 5.30387 5.36023 5.38982 5.42584 5.44781 5.50199 5.51945 5.54641 5.59513 5.73942 5.76584 5.81320 5.82869 5.89854 5.95644 6.00635 6.11524 6.23119 6.30192 6.34885 6.56974 7.20721 7.25496 7.40155 7.75809 7.98672 8.02117 8.25446 8.80771 9.01398 9.68498 10.12067 10.85534 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014041 B = 0.002973 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.673583 B = 9416.699980 C =10480.201270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C -0.141 4.141 4 C 0.516 3.484 5 O -0.536 6.536 6 N -0.611 5.611 7 C 0.103 3.897 8 C -0.133 4.133 9 C -0.114 4.114 10 C 0.068 3.932 11 H 0.042 0.958 12 N -0.502 5.502 13 C 0.046 3.954 14 C 0.037 3.963 15 O -0.550 6.550 16 C 0.030 3.970 17 C 0.468 3.532 18 O -0.579 6.579 19 N -0.578 5.578 20 C -0.375 4.375 21 H 0.096 0.904 22 C -0.013 4.013 23 N -0.906 5.906 24 Si 1.091 2.909 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.286 1.286 28 C 0.114 3.886 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.038 0.962 46 H 0.368 0.632 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.374 0.626 50 H 0.261 0.739 51 H 0.079 0.921 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.094 11.745 -24.045 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.137 4.137 3 C -0.199 4.199 4 C 0.304 3.696 5 O -0.412 6.412 6 N -0.345 5.345 7 C -0.020 4.020 8 C -0.171 4.171 9 C -0.152 4.152 10 C -0.041 4.041 11 H 0.060 0.940 12 N -0.225 5.225 13 C -0.082 4.082 14 C -0.043 4.043 15 O -0.355 6.355 16 C -0.101 4.101 17 C 0.255 3.745 18 O -0.463 6.463 19 N -0.216 5.216 20 C -0.505 4.505 21 H 0.114 0.886 22 C -0.215 4.215 23 N -0.546 5.546 24 Si 0.917 3.083 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.212 1.212 28 C -0.009 4.009 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.135 0.865 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.214 0.786 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.206 0.794 50 H 0.072 0.928 51 H 0.097 0.903 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.175 9.570 -22.255 24.226 hybrid contribution -0.335 2.378 -1.348 2.754 sum -0.160 11.948 -23.603 26.455 Atomic orbital electron populations 1.21651 0.92442 1.02898 1.02237 1.21335 0.98321 0.97445 0.96551 1.21749 1.01249 0.93856 1.03033 1.20731 0.80824 0.78145 0.89870 1.90721 1.55465 1.58829 1.36144 1.48123 1.15877 1.59283 1.11194 1.21860 0.91717 1.01760 0.86682 1.21926 0.96050 1.00130 0.99032 1.21616 0.98471 1.01909 0.93175 1.21962 0.93900 0.96364 0.91894 0.94005 1.61805 1.03619 1.52772 1.04332 1.22581 0.92146 0.91241 1.02185 1.22989 0.96493 1.00130 0.84664 1.86836 1.82563 1.33498 1.32602 1.22213 0.95627 1.01271 0.90989 1.19461 0.86675 0.85205 0.83194 1.90428 1.23551 1.51641 1.80710 1.41847 1.21517 1.44583 1.13661 1.20471 1.08276 1.26365 0.95371 0.88618 1.26419 0.95601 1.00245 0.99212 1.70878 1.17928 1.29906 1.35929 0.83146 0.75147 0.75150 0.74843 1.20555 1.21164 1.21215 1.21734 0.94102 0.98017 0.87013 0.92226 0.91523 0.91995 0.88985 0.92168 0.91310 0.91856 0.89508 0.90950 0.91665 0.90301 0.91307 0.90491 0.86486 0.89978 0.93814 0.94376 0.78593 0.90289 0.90210 0.79352 0.92799 0.90312 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 8.62 37.16 0.32 -0.80 16 2 C -0.12 -0.93 2.42 -91.77 -0.22 -1.15 16 3 C -0.14 -0.94 9.06 37.16 0.34 -0.60 16 4 C 0.52 6.29 6.81 -10.99 -0.07 6.22 16 5 O -0.54 -8.92 15.62 5.56 0.09 -8.83 16 6 N -0.61 -6.70 2.97 -172.77 -0.51 -7.21 16 7 C 0.10 0.74 6.20 -3.71 -0.02 0.72 16 8 C -0.13 -0.92 6.08 -26.62 -0.16 -1.08 16 9 C -0.11 -1.12 5.06 -26.69 -0.13 -1.25 16 10 C 0.07 0.87 1.89 -67.59 -0.13 0.75 16 11 H 0.04 0.55 6.11 -51.93 -0.32 0.23 16 12 N -0.50 -8.32 4.34 -227.94 -0.99 -9.31 16 13 C 0.05 0.74 5.27 -3.83 -0.02 0.72 16 14 C 0.04 0.50 6.78 37.16 0.25 0.75 16 15 O -0.55 -8.88 10.24 -35.23 -0.36 -9.24 16 16 C 0.03 0.57 4.59 -4.98 -0.02 0.55 16 17 C 0.47 11.71 7.10 -10.99 -0.08 11.63 16 18 O -0.58 -16.24 13.79 5.55 0.08 -16.17 16 19 N -0.58 -15.53 5.28 -10.96 -0.06 -15.59 16 20 C -0.38 -11.08 9.68 -14.94 -0.14 -11.23 16 21 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 22 C -0.01 -0.37 5.50 -17.47 -0.10 -0.47 16 23 N -0.91 -26.72 13.68 55.50 0.76 -25.96 16 24 Si 1.09 25.49 29.92 -169.99 -5.09 20.41 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 28 C 0.11 1.54 5.06 -3.71 -0.02 1.52 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.54 6.30 -51.93 -0.33 0.21 16 33 H 0.06 0.37 7.87 -51.93 -0.41 -0.04 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.44 5.20 -51.93 -0.27 0.17 16 37 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.65 6.29 -51.93 -0.33 0.32 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.12 2.42 5.80 -51.93 -0.30 2.12 16 43 H 0.08 1.08 6.10 -51.93 -0.32 0.76 16 44 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.04 0.46 5.99 -51.93 -0.31 0.15 16 46 H 0.37 4.25 9.12 45.56 0.42 4.66 16 47 H 0.08 1.48 5.83 -51.93 -0.30 1.18 16 48 H 0.08 1.49 5.14 -51.93 -0.27 1.23 16 49 H 0.37 9.53 6.73 -40.82 -0.27 9.26 16 50 H 0.26 7.48 6.78 -40.82 -0.28 7.20 16 51 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 52 H 0.09 1.51 5.39 -51.93 -0.28 1.23 16 LS Contribution 392.55 15.07 5.92 5.92 Total: -1.00 -37.23 392.55 -7.77 -45.00 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -7.38 Total: 14.73 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -0.22 Total: 6.27 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.80 Total: -58.07 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.20 Total: -34.24 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.09 Total: 20.41 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.23 -7.77 -45.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707208427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.509 kcal (2) G-P(sol) polarization free energy of solvation -37.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds