Wall clock time and date at job start Wed Apr 1 2020 00:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.47047 * 2 1 4 4 C 1.50695 * 109.46781 * 119.99836 * 2 1 3 5 5 O 1.21282 * 120.00139 * 336.32032 * 4 2 1 6 6 N 1.34778 * 120.00004 * 156.32518 * 4 2 1 7 7 C 1.46927 * 120.62867 * 354.15018 * 6 4 2 8 8 C 1.53187 * 108.77334 * 126.41584 * 7 6 4 9 9 C 1.53037 * 109.31783 * 54.63676 * 8 7 6 10 10 C 1.53047 * 109.53477 * 298.63291 * 9 8 7 11 11 H 1.09001 * 109.49737 * 301.38413 * 10 9 8 12 12 N 1.46896 * 109.49729 * 181.31892 * 10 9 8 13 13 C 1.46894 * 111.00166 * 62.80532 * 12 10 9 14 14 C 1.53004 * 109.46884 * 65.35270 * 13 12 10 15 15 O 1.42895 * 109.47352 * 72.77023 * 14 13 12 16 16 C 1.46897 * 110.99952 * 186.76468 * 12 10 9 17 17 C 1.50697 * 109.47298 * 171.14672 * 16 12 10 18 18 O 1.21290 * 120.00032 * 0.02562 * 17 16 12 19 19 N 1.34779 * 120.00472 * 179.97438 * 17 16 12 20 20 C 1.37093 * 120.00406 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00032 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00382 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99757 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00478 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47238 * 179.97438 * 24 22 20 26 26 H 1.48496 * 109.47190 * 300.00339 * 24 22 20 27 27 H 1.48500 * 109.46841 * 60.00108 * 24 22 20 28 28 C 1.46928 * 120.63244 * 174.17148 * 6 4 2 29 29 H 1.08995 * 109.47097 * 185.00659 * 1 2 3 30 30 H 1.09004 * 109.46874 * 305.00345 * 1 2 3 31 31 H 1.08999 * 109.46850 * 65.00522 * 1 2 3 32 32 H 1.09000 * 109.46939 * 239.99761 * 2 1 3 33 33 H 1.09006 * 109.46841 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46919 * 299.99473 * 3 2 1 35 35 H 1.08997 * 109.47639 * 59.99570 * 3 2 1 36 36 H 1.09000 * 109.58518 * 6.62588 * 7 6 4 37 37 H 1.09008 * 109.58345 * 246.19877 * 7 6 4 38 38 H 1.09000 * 109.49932 * 294.67835 * 8 7 6 39 39 H 1.09002 * 109.49403 * 174.58711 * 8 7 6 40 40 H 1.08996 * 109.46352 * 178.61645 * 9 8 7 41 41 H 1.09003 * 109.46287 * 58.65063 * 9 8 7 42 42 H 1.09005 * 109.46991 * 185.34620 * 13 12 10 43 43 H 1.08996 * 109.47562 * 305.34761 * 13 12 10 44 44 H 1.09003 * 109.46979 * 192.76757 * 14 13 12 45 45 H 1.08994 * 109.46939 * 312.76635 * 14 13 12 46 46 H 0.96698 * 114.00070 * 184.96095 * 15 14 13 47 47 H 1.09005 * 109.47611 * 51.14513 * 16 12 10 48 48 H 1.09003 * 109.47016 * 291.14764 * 16 12 10 49 49 H 0.97008 * 119.99253 * 0.02562 * 19 17 16 50 50 H 0.97001 * 119.99857 * 359.97438 * 23 22 20 51 51 H 1.08997 * 109.58586 * 113.80015 * 28 6 4 52 52 H 1.09001 * 109.58760 * 353.37516 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.3276 -0.7912 2.2142 6 7 3.2648 -1.2558 1.2378 7 6 4.0805 -1.2789 0.0160 8 6 5.4428 -0.6480 0.3208 9 6 6.0776 -1.3659 1.5139 10 6 5.1832 -1.2019 2.7449 11 1 5.0531 -0.1416 2.9614 12 7 5.8087 -1.8644 3.8972 13 6 7.0941 -1.2368 4.2314 14 6 6.8532 0.1983 4.7043 15 8 6.2745 0.1786 6.0107 16 6 4.9066 -1.8668 5.0566 17 6 5.4863 -2.7364 6.1423 18 8 6.5468 -3.2986 5.9676 19 7 4.8268 -2.8888 7.3078 20 6 5.3544 -3.6795 8.2956 21 1 6.2987 -4.1801 8.1401 22 6 4.6743 -3.8371 9.4970 23 7 3.5250 -3.2284 9.6861 24 14 5.3927 -4.9151 10.8428 25 1 4.4811 -4.9170 12.0151 26 1 5.5501 -6.3017 10.3352 27 1 6.7185 -4.3829 11.2483 28 6 3.8180 -1.8391 2.4677 29 1 -0.3633 -1.0237 0.0897 30 1 -0.3633 0.5895 0.8418 31 1 -0.3633 0.4342 -0.9314 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 3.5810 -0.7092 -0.7676 37 1 4.2200 -2.3094 -0.3108 38 1 5.3098 0.4072 0.5597 39 1 6.0916 -0.7453 -0.5497 40 1 7.0579 -0.9350 1.7174 41 1 6.1876 -2.4256 1.2836 42 1 7.5798 -1.8042 5.0254 43 1 7.7336 -1.2261 3.3489 44 1 7.8016 0.7347 4.7351 45 1 6.1747 0.6992 4.0139 46 1 6.0245 1.0514 6.3433 47 1 3.9334 -2.2573 4.7590 48 1 4.7912 -0.8489 5.4292 49 1 3.9788 -2.4389 7.4476 50 1 3.1517 -2.6690 8.9872 51 1 3.9360 -2.9152 2.3408 52 1 3.1453 -1.6391 3.3017 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707208427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:51 Heat of formation + Delta-G solvation = -136.094698 kcal Electronic energy + Delta-G solvation = -32167.888848 eV Core-core repulsion = 27973.599169 eV Total energy + Delta-G solvation = -4194.289679 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.71618 -40.71371 -39.34421 -38.04690 -36.61102 -36.09302 -35.42455 -33.47151 -33.06353 -31.57695 -30.45441 -28.09847 -27.61177 -26.86313 -25.79149 -24.57300 -23.38480 -22.82997 -21.40374 -20.58964 -19.85283 -19.69136 -18.84155 -18.48254 -17.96752 -17.60424 -16.91913 -16.58440 -16.35967 -16.04528 -15.74818 -15.65358 -15.40690 -15.22782 -15.18752 -14.91843 -14.54696 -14.22259 -14.05473 -13.99369 -13.57758 -13.51460 -13.30928 -13.16601 -13.06758 -12.95005 -12.84242 -12.71466 -12.57642 -12.45083 -12.15007 -12.10322 -11.92305 -11.85305 -11.82154 -11.67282 -11.51045 -11.42040 -10.85084 -10.70772 -10.25891 -10.04902 -9.72406 -9.14179 -8.90107 -6.01840 1.51896 1.54043 1.54660 1.81281 1.86748 2.10530 2.41606 2.70700 3.19671 3.27860 3.36889 3.42083 3.68741 3.79065 3.88312 3.95797 4.01026 4.06499 4.08158 4.15608 4.17021 4.28309 4.36812 4.37687 4.42912 4.54546 4.57651 4.64198 4.70343 4.74113 4.76723 4.80145 4.85330 4.88344 4.98281 5.02069 5.03833 5.09151 5.21864 5.28985 5.30050 5.40657 5.44874 5.62002 5.90193 5.98566 6.18179 6.38229 6.62775 6.78829 6.82330 7.11982 7.50829 8.01439 8.57428 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014041 B = 0.002973 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.673583 B = 9416.699980 C =10480.201270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C -0.138 4.138 4 C 0.506 3.494 5 O -0.594 6.594 6 N -0.607 5.607 7 C 0.095 3.905 8 C -0.123 4.123 9 C -0.111 4.111 10 C 0.077 3.923 11 H 0.046 0.954 12 N -0.517 5.517 13 C 0.046 3.954 14 C 0.041 3.959 15 O -0.585 6.585 16 C 0.047 3.953 17 C 0.468 3.532 18 O -0.611 6.611 19 N -0.592 5.592 20 C -0.403 4.403 21 H 0.072 0.928 22 C -0.048 4.048 23 N -0.921 5.921 24 Si 1.135 2.865 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.272 1.272 28 C 0.116 3.884 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.114 0.886 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.386 0.614 47 H 0.081 0.919 48 H 0.090 0.910 49 H 0.378 0.622 50 H 0.255 0.745 51 H 0.065 0.935 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 13.315 -27.282 30.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.128 4.128 3 C -0.195 4.195 4 C 0.296 3.704 5 O -0.474 6.474 6 N -0.339 5.339 7 C -0.026 4.026 8 C -0.162 4.162 9 C -0.149 4.149 10 C -0.032 4.032 11 H 0.063 0.937 12 N -0.241 5.241 13 C -0.082 4.082 14 C -0.038 4.038 15 O -0.393 6.393 16 C -0.083 4.083 17 C 0.256 3.744 18 O -0.496 6.496 19 N -0.231 5.231 20 C -0.532 4.532 21 H 0.090 0.910 22 C -0.245 4.245 23 N -0.561 5.561 24 Si 0.955 3.045 25 H -0.197 1.197 26 H -0.198 1.198 27 H -0.198 1.198 28 C -0.007 4.007 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.144 0.856 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.060 0.940 36 H 0.137 0.863 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.132 0.868 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.235 0.765 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.211 0.789 50 H 0.066 0.934 51 H 0.083 0.917 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.054 11.177 -25.559 27.916 hybrid contribution -0.582 1.893 -0.437 2.029 sum 0.472 13.071 -25.996 29.101 Atomic orbital electron populations 1.21671 0.92930 1.01809 1.02871 1.21426 0.97897 0.98236 0.95281 1.21766 1.01968 0.92477 1.03316 1.21652 0.80543 0.77628 0.90554 1.90696 1.57100 1.61030 1.38555 1.48239 1.16012 1.58231 1.11440 1.22232 0.91781 1.03078 0.85540 1.21918 0.95828 0.99827 0.98602 1.21642 0.98420 1.02100 0.92735 1.22004 0.93850 0.95747 0.91561 0.93662 1.61755 1.03648 1.54588 1.04096 1.22502 0.91796 0.91900 1.01956 1.23000 0.98042 0.98737 0.84003 1.86767 1.82964 1.35561 1.34040 1.21973 0.95774 1.00163 0.90440 1.20469 0.85878 0.84514 0.83507 1.90406 1.24978 1.52827 1.81414 1.41943 1.21953 1.45000 1.14175 1.20484 1.08085 1.27722 0.96936 0.91011 1.27872 0.95139 1.00525 1.00959 1.70962 1.18600 1.30583 1.35970 0.82630 0.75169 0.74200 0.72534 1.19691 1.19790 1.19756 1.21467 0.94062 0.97558 0.87657 0.93741 0.93777 0.88891 0.85647 0.90978 0.88592 0.94026 0.86295 0.90215 0.90943 0.87086 0.90325 0.91336 0.91651 0.86831 0.91515 0.92202 0.76482 0.90147 0.89296 0.78876 0.93406 0.91687 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.62 71.99 0.62 -1.45 16 2 C -0.11 -1.46 2.42 -11.54 -0.03 -1.49 16 3 C -0.14 -1.38 9.06 71.98 0.65 -0.72 16 4 C 0.51 12.02 6.81 87.66 0.60 12.62 16 5 O -0.59 -20.71 15.62 -3.04 -0.05 -20.76 16 6 N -0.61 -12.47 2.97 -818.91 -2.43 -14.90 16 7 C 0.09 1.00 6.20 86.36 0.54 1.54 16 8 C -0.12 -1.14 6.08 30.67 0.19 -0.95 16 9 C -0.11 -1.86 5.06 30.62 0.15 -1.71 16 10 C 0.08 1.89 1.89 45.00 0.09 1.97 16 11 H 0.05 1.10 6.11 -2.39 -0.01 1.09 16 12 N -0.52 -17.26 4.34 -875.07 -3.80 -21.06 16 13 C 0.05 1.45 5.27 86.31 0.45 1.91 16 14 C 0.04 1.06 6.78 71.98 0.49 1.54 16 15 O -0.59 -18.91 10.24 -148.98 -1.53 -20.44 16 16 C 0.05 1.89 4.59 85.56 0.39 2.29 16 17 C 0.47 24.52 7.10 87.66 0.62 25.14 16 18 O -0.61 -35.91 13.79 -3.06 -0.04 -35.95 16 19 N -0.59 -33.32 5.28 -306.99 -1.62 -34.94 16 20 C -0.40 -24.74 9.68 84.04 0.81 -23.92 16 21 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.05 -2.79 5.50 84.93 0.47 -2.32 16 23 N -0.92 -55.31 13.68 21.66 0.30 -55.01 16 24 Si 1.14 51.67 29.92 68.60 2.05 53.72 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 C 0.12 3.19 5.06 86.36 0.44 3.62 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.04 0.86 8.04 -2.39 -0.02 0.84 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.13 0.87 6.30 -2.39 -0.02 0.86 16 33 H 0.07 0.56 7.87 -2.38 -0.02 0.54 16 34 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.12 0.54 5.20 -2.39 -0.01 0.52 16 37 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.08 1.19 6.29 -2.39 -0.02 1.17 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 2.80 5.80 -2.38 -0.01 2.79 16 43 H 0.11 2.77 6.10 -2.39 -0.01 2.76 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.06 1.30 5.99 -2.39 -0.01 1.28 16 46 H 0.39 8.76 9.12 -74.06 -0.68 8.09 16 47 H 0.08 3.20 5.83 -2.38 -0.01 3.19 16 48 H 0.09 3.43 5.14 -2.39 -0.01 3.42 16 49 H 0.38 20.29 6.73 -92.70 -0.62 19.67 16 50 H 0.26 15.11 6.78 -92.71 -0.63 14.48 16 51 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 52 H 0.06 2.08 5.39 -2.39 -0.01 2.07 16 Total: -1.00 -87.30 392.55 -0.84 -88.14 By element: Atomic # 1 Polarization: 43.33 SS G_CDS: -0.20 Total: 43.13 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 6.48 Total: 18.07 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -7.56 Total: -125.91 kcal Atomic # 8 Polarization: -75.53 SS G_CDS: -1.62 Total: -77.15 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.05 Total: 53.72 kcal Total: -87.30 -0.84 -88.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707208427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.958 kcal (2) G-P(sol) polarization free energy of solvation -87.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds