Wall clock time and date at job start Wed Apr 1 2020 00:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47011 * 2 1 4 4 H 1.08996 * 109.47439 * 59.08232 * 3 2 1 5 5 N 1.46501 * 109.47038 * 299.08037 * 3 2 1 6 6 C 1.34772 * 120.00216 * 85.00199 * 5 3 2 7 7 C 1.50702 * 120.00598 * 180.02562 * 6 5 3 8 8 O 1.21289 * 119.99601 * 0.02562 * 6 5 3 9 9 C 1.50699 * 109.46946 * 179.08395 * 3 2 1 10 10 O 1.21281 * 120.00381 * 97.73749 * 9 3 2 11 11 N 1.34777 * 119.99840 * 277.73527 * 9 3 2 12 12 C 1.46922 * 120.63364 * 4.05125 * 11 9 3 13 13 C 1.53190 * 108.77566 * 233.61254 * 12 11 9 14 14 C 1.53044 * 109.30937 * 305.35872 * 13 12 11 15 15 C 1.53037 * 109.53654 * 61.37009 * 14 13 12 16 16 H 1.09003 * 109.50082 * 58.61692 * 15 14 13 17 17 N 1.46502 * 109.49887 * 178.68196 * 15 14 13 18 18 C 1.36933 * 119.99907 * 59.92822 * 17 15 14 19 19 H 1.07999 * 120.00558 * 327.57478 * 18 17 15 20 20 C 1.38811 * 119.99566 * 147.57136 * 18 17 15 21 21 N 1.31620 * 120.00265 * 338.10421 * 20 18 17 22 22 Si 1.86801 * 120.00087 * 158.11018 * 20 18 17 23 23 H 1.48507 * 109.46797 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47363 * 119.99379 * 22 20 18 25 25 H 1.48502 * 109.47222 * 239.99982 * 22 20 18 26 26 C 1.46498 * 119.99807 * 239.93915 * 17 15 14 27 27 C 1.52994 * 109.47540 * 83.77310 * 26 17 15 28 28 O 1.42901 * 109.47369 * 64.99691 * 27 26 17 29 29 C 1.46933 * 120.60474 * 184.07262 * 11 9 3 30 30 H 1.08997 * 109.47220 * 300.00225 * 1 2 3 31 31 H 1.08998 * 109.47479 * 60.00322 * 1 2 3 32 32 H 1.09007 * 109.47486 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47220 * 239.99775 * 2 1 3 34 34 H 1.09000 * 109.46764 * 119.99873 * 2 1 3 35 35 H 0.97007 * 120.00115 * 265.00091 * 5 3 2 36 36 H 1.09002 * 109.46904 * 89.99566 * 7 6 5 37 37 H 1.08994 * 109.47315 * 210.00406 * 7 6 5 38 38 H 1.09003 * 109.46711 * 329.99952 * 7 6 5 39 39 H 1.09001 * 109.58951 * 113.81919 * 12 11 9 40 40 H 1.09010 * 109.58121 * 353.39570 * 12 11 9 41 41 H 1.09003 * 109.49507 * 185.41313 * 13 12 11 42 42 H 1.08999 * 109.53009 * 65.33008 * 13 12 11 43 43 H 1.08994 * 109.46420 * 301.34891 * 14 13 12 44 44 H 1.09003 * 109.44705 * 181.38377 * 14 13 12 45 45 H 0.97004 * 120.00018 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.47026 * 323.76675 * 26 17 15 47 47 H 1.09007 * 109.46538 * 203.77452 * 26 17 15 48 48 H 1.09005 * 109.47087 * 185.00272 * 27 26 17 49 49 H 1.09005 * 109.47137 * 304.99417 * 27 26 17 50 50 H 0.96697 * 113.99969 * 180.02562 * 28 27 26 51 51 H 1.09006 * 109.61561 * 6.62048 * 29 11 9 52 52 H 1.09004 * 109.56452 * 246.19756 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6632 1.9611 0.8816 5 7 1.5697 2.1267 -1.2071 6 6 0.3480 2.6952 -1.2269 7 6 -0.1360 3.3985 -2.4688 8 8 -0.3621 2.6407 -0.2451 9 6 3.5467 1.4425 0.0227 10 8 4.1688 1.5784 -1.0095 11 7 4.2031 1.2916 1.1902 12 6 3.4664 1.0377 2.4357 13 6 3.8873 2.0781 3.4784 14 6 5.4098 2.0530 3.6323 15 6 6.0652 2.4145 2.2975 16 1 5.7287 3.4023 1.9826 17 7 7.5218 2.4210 2.4538 18 6 8.1735 1.2821 2.8456 19 1 7.6889 0.5852 3.5133 20 6 9.4569 1.0235 2.3844 21 7 9.8870 1.5952 1.2797 22 14 10.5737 -0.1363 3.3316 23 1 9.8582 -0.6437 4.5300 24 1 10.9542 -1.2779 2.4615 25 1 11.7965 0.5911 3.7568 26 6 8.2812 3.6460 2.1912 27 6 8.2638 4.5339 3.4371 28 8 8.9595 3.8781 4.4992 29 6 5.6690 1.3785 1.2409 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 2.1378 2.1705 -1.9922 36 1 -0.6570 2.6870 -3.1095 37 1 -0.8170 4.2022 -2.1891 38 1 0.7162 3.8148 -3.0059 39 1 3.7009 0.0380 2.8017 40 1 2.3954 1.1192 2.2499 41 1 3.4210 1.8434 4.4353 42 1 3.5708 3.0690 3.1527 43 1 5.7279 1.0553 3.9347 44 1 5.7097 2.7754 4.3916 45 1 10.7841 1.4147 0.9576 46 1 7.8290 4.1819 1.3567 47 1 9.3109 3.3888 1.9427 48 1 8.7520 5.4826 3.2140 49 1 7.2323 4.7181 3.7376 50 1 8.9879 4.3846 5.3224 51 1 6.0513 1.6851 0.2672 52 1 6.0832 0.4065 1.5088 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707209423.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:16 Heat of formation + Delta-G solvation = -98.441271 kcal Electronic energy + Delta-G solvation = -32166.693819 eV Core-core repulsion = 27974.036915 eV Total energy + Delta-G solvation = -4192.656903 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.68956 -39.36518 -37.60678 -36.21766 -35.43338 -34.64206 -32.85874 -32.14245 -31.25476 -29.98244 -29.69385 -27.67634 -26.90796 -24.77817 -24.00227 -22.42790 -22.11036 -20.87165 -20.48666 -19.85026 -18.93533 -17.57862 -16.85299 -16.60307 -16.41735 -16.05927 -15.94388 -15.19709 -14.92436 -14.61470 -14.43318 -14.19124 -13.95719 -13.72755 -13.63097 -13.46207 -13.37202 -12.79930 -12.74842 -12.72024 -12.57349 -12.39836 -12.22484 -12.04865 -11.83065 -11.64536 -11.35530 -11.23180 -11.05774 -10.88190 -10.74820 -10.63426 -10.47812 -10.15596 -10.03760 -10.02333 -9.87328 -9.62576 -9.57192 -9.17689 -9.08986 -8.44807 -8.27847 -6.60461 -5.72460 -3.23660 2.43640 2.65487 2.89350 3.38882 3.43583 3.51798 3.54058 4.38340 4.54569 4.64005 4.79489 4.83362 4.96394 5.02048 5.15298 5.17443 5.20383 5.23353 5.29750 5.37742 5.42744 5.48149 5.59194 5.64929 5.69117 5.79418 5.81856 5.90665 5.94563 6.02125 6.07133 6.16079 6.21597 6.25714 6.27714 6.30375 6.50940 6.60518 6.64342 6.72360 6.84107 7.04088 7.04282 7.36854 7.63919 7.73139 7.86385 8.05846 8.28506 8.43459 8.61039 9.21907 9.87749 10.39164 11.29868 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.002968 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.616802 B = 9432.222382 C = 9695.619988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.126 3.874 4 H 0.109 0.891 5 N -0.712 5.712 6 C 0.513 3.487 7 C -0.172 4.172 8 O -0.546 6.546 9 C 0.507 3.493 10 O -0.542 6.542 11 N -0.598 5.598 12 C 0.102 3.898 13 C -0.133 4.133 14 C -0.126 4.126 15 C 0.166 3.834 16 H 0.048 0.952 17 N -0.567 5.567 18 C -0.238 4.238 19 H 0.061 0.939 20 C 0.012 3.988 21 N -0.892 5.892 22 Si 0.900 3.100 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.290 1.290 26 C 0.138 3.862 27 C 0.061 3.939 28 O -0.544 6.544 29 C 0.106 3.894 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.411 0.589 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.252 0.748 46 H 0.035 0.965 47 H 0.114 0.886 48 H 0.020 0.980 49 H 0.020 0.980 50 H 0.349 0.651 51 H 0.087 0.913 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.526 2.590 -1.799 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.017 3.983 4 H 0.127 0.873 5 N -0.366 5.366 6 C 0.300 3.700 7 C -0.232 4.232 8 O -0.423 6.423 9 C 0.293 3.707 10 O -0.419 6.419 11 N -0.331 5.331 12 C -0.021 4.021 13 C -0.171 4.171 14 C -0.166 4.166 15 C 0.057 3.943 16 H 0.066 0.934 17 N -0.286 5.286 18 C -0.367 4.367 19 H 0.078 0.922 20 C -0.186 4.186 21 N -0.536 5.536 22 Si 0.730 3.270 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.216 1.216 26 C 0.012 3.988 27 C -0.020 4.020 28 O -0.345 6.345 29 C -0.017 4.017 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.248 0.752 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.131 0.869 48 H 0.038 0.962 49 H 0.039 0.961 50 H 0.192 0.808 51 H 0.106 0.894 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.423 2.138 -2.211 17.693 hybrid contribution 0.911 -0.018 0.637 1.111 sum -16.513 2.120 -1.574 16.723 Atomic orbital electron populations 1.21785 0.94086 1.00878 1.03012 1.21885 0.97458 0.94110 1.03356 1.20923 0.91613 0.95256 0.90516 0.87287 1.45910 1.17885 1.56385 1.16456 1.20750 0.80922 0.78096 0.90235 1.21876 1.03268 1.01966 0.96077 1.90723 1.55366 1.59918 1.36338 1.20437 0.89187 0.77074 0.83972 1.90689 1.68856 1.50339 1.32047 1.48301 1.08810 1.69378 1.06609 1.21867 0.95857 0.99615 0.84752 1.21937 0.98276 0.98788 0.98147 1.21981 0.92096 1.02718 0.99769 1.20638 0.86278 0.95462 0.91872 0.93369 1.43735 0.99221 1.07767 1.77904 1.18872 0.97801 0.99328 1.20713 0.92153 1.24948 0.99683 0.98653 0.95361 1.69943 1.17951 1.46244 1.19467 0.86285 0.81107 0.79906 0.79669 1.20362 1.22212 1.21626 1.21151 1.02198 0.85362 0.90132 1.23067 0.92958 0.94759 0.91186 1.86849 1.78193 1.47343 1.22097 1.22428 0.75202 1.01929 1.02106 0.91725 0.92768 0.93139 0.91103 0.90379 0.75238 0.88872 0.88820 0.90013 0.90925 0.90268 0.91205 0.92113 0.91476 0.92237 0.93756 0.94709 0.86861 0.96218 0.96139 0.80838 0.89425 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.45 37.16 0.31 -1.14 16 2 C -0.13 -1.39 5.39 -26.73 -0.14 -1.54 16 3 C 0.13 1.54 1.84 -69.08 -0.13 1.42 16 4 H 0.11 1.36 6.04 -51.93 -0.31 1.05 16 5 N -0.71 -7.99 4.95 -54.93 -0.27 -8.27 16 6 C 0.51 5.55 6.33 -10.99 -0.07 5.48 16 7 C -0.17 -1.18 10.30 36.01 0.37 -0.81 16 8 O -0.55 -7.56 14.23 5.55 0.08 -7.48 16 9 C 0.51 7.92 6.93 -10.99 -0.08 7.84 16 10 O -0.54 -10.24 15.38 5.56 0.09 -10.16 16 11 N -0.60 -9.37 2.97 -172.76 -0.51 -9.89 16 12 C 0.10 1.26 5.68 -3.71 -0.02 1.24 16 13 C -0.13 -1.71 6.08 -26.61 -0.16 -1.87 16 14 C -0.13 -2.12 5.11 -26.69 -0.14 -2.26 16 15 C 0.17 3.27 2.78 -67.81 -0.19 3.08 16 16 H 0.05 0.95 7.88 -51.93 -0.41 0.54 16 17 N -0.57 -13.31 2.36 -165.53 -0.39 -13.70 16 18 C -0.24 -6.20 8.00 -15.06 -0.12 -6.32 16 19 H 0.06 1.58 6.85 -52.49 -0.36 1.22 16 20 C 0.01 0.34 4.94 -17.43 -0.09 0.26 16 21 N -0.89 -25.43 11.22 55.49 0.62 -24.80 16 22 Si 0.90 22.05 29.61 -169.99 -5.03 17.01 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 C 0.14 3.19 5.56 -4.05 -0.02 3.17 16 27 C 0.06 1.18 7.38 37.15 0.27 1.46 16 28 O -0.54 -11.23 13.43 -35.23 -0.47 -11.70 16 29 C 0.11 2.09 5.75 -3.71 -0.02 2.06 16 30 H 0.06 0.72 7.59 -51.93 -0.39 0.33 16 31 H 0.05 0.60 5.75 -51.93 -0.30 0.30 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.78 7.11 -51.93 -0.37 0.41 16 35 H 0.41 4.42 7.76 -40.82 -0.32 4.10 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.81 5.04 -51.92 -0.26 0.55 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.22 7.02 -51.93 -0.36 0.86 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.03 0.77 8.05 -51.93 -0.42 0.35 16 47 H 0.11 3.05 5.23 -51.93 -0.27 2.77 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.35 5.23 9.12 45.56 0.42 5.64 16 51 H 0.09 2.00 7.03 -51.93 -0.37 1.63 16 52 H 0.08 1.66 7.50 -51.93 -0.39 1.27 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -32.87 401.84 -7.96 -40.83 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -7.90 Total: 10.02 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -0.22 Total: 12.08 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.55 Total: -56.65 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.31 Total: -29.35 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.87 -7.96 -40.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707209423.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.616 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds