Wall clock time and date at job start Wed Apr 1 2020 00:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47011 * 2 1 4 4 H 1.08996 * 109.47439 * 59.08232 * 3 2 1 5 5 N 1.46501 * 109.47038 * 299.08037 * 3 2 1 6 6 C 1.34772 * 120.00216 * 85.00199 * 5 3 2 7 7 C 1.50702 * 120.00598 * 180.02562 * 6 5 3 8 8 O 1.21289 * 119.99601 * 0.02562 * 6 5 3 9 9 C 1.50699 * 109.46946 * 179.08395 * 3 2 1 10 10 O 1.21281 * 120.00381 * 97.73749 * 9 3 2 11 11 N 1.34777 * 119.99840 * 277.73527 * 9 3 2 12 12 C 1.46922 * 120.63364 * 4.05125 * 11 9 3 13 13 C 1.53190 * 108.77566 * 233.61254 * 12 11 9 14 14 C 1.53044 * 109.30937 * 305.35872 * 13 12 11 15 15 C 1.53037 * 109.53654 * 61.37009 * 14 13 12 16 16 H 1.09003 * 109.50082 * 58.61692 * 15 14 13 17 17 N 1.46502 * 109.49887 * 178.68196 * 15 14 13 18 18 C 1.36933 * 119.99907 * 59.92822 * 17 15 14 19 19 H 1.07999 * 120.00558 * 327.57478 * 18 17 15 20 20 C 1.38811 * 119.99566 * 147.57136 * 18 17 15 21 21 N 1.31620 * 120.00265 * 338.10421 * 20 18 17 22 22 Si 1.86801 * 120.00087 * 158.11018 * 20 18 17 23 23 H 1.48507 * 109.46797 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47363 * 119.99379 * 22 20 18 25 25 H 1.48502 * 109.47222 * 239.99982 * 22 20 18 26 26 C 1.46498 * 119.99807 * 239.93915 * 17 15 14 27 27 C 1.52994 * 109.47540 * 83.77310 * 26 17 15 28 28 O 1.42901 * 109.47369 * 64.99691 * 27 26 17 29 29 C 1.46933 * 120.60474 * 184.07262 * 11 9 3 30 30 H 1.08997 * 109.47220 * 300.00225 * 1 2 3 31 31 H 1.08998 * 109.47479 * 60.00322 * 1 2 3 32 32 H 1.09007 * 109.47486 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47220 * 239.99775 * 2 1 3 34 34 H 1.09000 * 109.46764 * 119.99873 * 2 1 3 35 35 H 0.97007 * 120.00115 * 265.00091 * 5 3 2 36 36 H 1.09002 * 109.46904 * 89.99566 * 7 6 5 37 37 H 1.08994 * 109.47315 * 210.00406 * 7 6 5 38 38 H 1.09003 * 109.46711 * 329.99952 * 7 6 5 39 39 H 1.09001 * 109.58951 * 113.81919 * 12 11 9 40 40 H 1.09010 * 109.58121 * 353.39570 * 12 11 9 41 41 H 1.09003 * 109.49507 * 185.41313 * 13 12 11 42 42 H 1.08999 * 109.53009 * 65.33008 * 13 12 11 43 43 H 1.08994 * 109.46420 * 301.34891 * 14 13 12 44 44 H 1.09003 * 109.44705 * 181.38377 * 14 13 12 45 45 H 0.97004 * 120.00018 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.47026 * 323.76675 * 26 17 15 47 47 H 1.09007 * 109.46538 * 203.77452 * 26 17 15 48 48 H 1.09005 * 109.47087 * 185.00272 * 27 26 17 49 49 H 1.09005 * 109.47137 * 304.99417 * 27 26 17 50 50 H 0.96697 * 113.99969 * 180.02562 * 28 27 26 51 51 H 1.09006 * 109.61561 * 6.62048 * 29 11 9 52 52 H 1.09004 * 109.56452 * 246.19756 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6632 1.9611 0.8816 5 7 1.5697 2.1267 -1.2071 6 6 0.3480 2.6952 -1.2269 7 6 -0.1360 3.3985 -2.4688 8 8 -0.3621 2.6407 -0.2451 9 6 3.5467 1.4425 0.0227 10 8 4.1688 1.5784 -1.0095 11 7 4.2031 1.2916 1.1902 12 6 3.4664 1.0377 2.4357 13 6 3.8873 2.0781 3.4784 14 6 5.4098 2.0530 3.6323 15 6 6.0652 2.4145 2.2975 16 1 5.7287 3.4023 1.9826 17 7 7.5218 2.4210 2.4538 18 6 8.1735 1.2821 2.8456 19 1 7.6889 0.5852 3.5133 20 6 9.4569 1.0235 2.3844 21 7 9.8870 1.5952 1.2797 22 14 10.5737 -0.1363 3.3316 23 1 9.8582 -0.6437 4.5300 24 1 10.9542 -1.2779 2.4615 25 1 11.7965 0.5911 3.7568 26 6 8.2812 3.6460 2.1912 27 6 8.2638 4.5339 3.4371 28 8 8.9595 3.8781 4.4992 29 6 5.6690 1.3785 1.2409 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 2.1378 2.1705 -1.9922 36 1 -0.6570 2.6870 -3.1095 37 1 -0.8170 4.2022 -2.1891 38 1 0.7162 3.8148 -3.0059 39 1 3.7009 0.0380 2.8017 40 1 2.3954 1.1192 2.2499 41 1 3.4210 1.8434 4.4353 42 1 3.5708 3.0690 3.1527 43 1 5.7279 1.0553 3.9347 44 1 5.7097 2.7754 4.3916 45 1 10.7841 1.4147 0.9576 46 1 7.8290 4.1819 1.3567 47 1 9.3109 3.3888 1.9427 48 1 8.7520 5.4826 3.2140 49 1 7.2323 4.7181 3.7376 50 1 8.9879 4.3846 5.3224 51 1 6.0513 1.6851 0.2672 52 1 6.0832 0.4065 1.5088 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707209423.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:15 Heat of formation + Delta-G solvation = -123.329316 kcal Electronic energy + Delta-G solvation = -32167.773045 eV Core-core repulsion = 27974.036915 eV Total energy + Delta-G solvation = -4193.736130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.81927 -40.45274 -39.08163 -37.74203 -36.50358 -36.22728 -34.03426 -33.42806 -32.86399 -31.35558 -30.58836 -29.24767 -28.14171 -26.15992 -25.69878 -23.82664 -23.05933 -22.20454 -21.70409 -21.28271 -20.20997 -18.65940 -18.31731 -18.18118 -17.80195 -17.20705 -16.91426 -16.73332 -16.40739 -16.01133 -15.86597 -15.43437 -15.26228 -15.02294 -14.93661 -14.77002 -14.42605 -14.23240 -14.09057 -13.92243 -13.57205 -13.49121 -13.31471 -13.10374 -13.06455 -12.91658 -12.82881 -12.77967 -12.48555 -12.41589 -12.25556 -11.92753 -11.89786 -11.79641 -11.69022 -11.61313 -11.28737 -10.90957 -10.86965 -10.65054 -10.42850 -10.13651 -9.68531 -8.54591 -7.75408 -5.28552 1.38571 1.45924 1.50369 1.57920 1.64804 1.77257 2.36943 2.57425 3.26920 3.36570 3.53729 3.79034 3.81937 3.87183 3.99571 4.05001 4.07054 4.12071 4.28042 4.34558 4.43666 4.47218 4.52968 4.55696 4.58859 4.65863 4.67575 4.78082 4.81507 4.88320 4.92000 4.98364 4.99807 5.03059 5.06104 5.07543 5.11803 5.18890 5.33468 5.41934 5.43492 5.49041 5.58457 5.75075 5.84104 6.37495 6.51292 6.51588 7.00925 7.18718 7.21408 7.24888 7.93762 8.41418 9.23426 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.002968 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.616802 B = 9432.222382 C = 9695.619988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.125 4.125 3 C 0.136 3.864 4 H 0.114 0.886 5 N -0.714 5.714 6 C 0.510 3.490 7 C -0.166 4.166 8 O -0.577 6.577 9 C 0.505 3.495 10 O -0.581 6.581 11 N -0.598 5.598 12 C 0.098 3.902 13 C -0.123 4.123 14 C -0.115 4.115 15 C 0.166 3.834 16 H 0.048 0.952 17 N -0.581 5.581 18 C -0.224 4.224 19 H 0.059 0.941 20 C -0.040 4.040 21 N -0.924 5.924 22 Si 0.950 3.050 23 H -0.269 1.269 24 H -0.298 1.298 25 H -0.298 1.298 26 C 0.132 3.868 27 C 0.072 3.928 28 O -0.573 6.573 29 C 0.124 3.876 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.413 0.587 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.245 0.755 46 H 0.034 0.966 47 H 0.077 0.923 48 H 0.044 0.956 49 H 0.037 0.963 50 H 0.375 0.625 51 H 0.047 0.953 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.305 2.789 -0.492 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.164 4.164 3 C 0.027 3.973 4 H 0.132 0.868 5 N -0.368 5.368 6 C 0.300 3.700 7 C -0.225 4.225 8 O -0.456 6.456 9 C 0.293 3.707 10 O -0.461 6.461 11 N -0.330 5.330 12 C -0.023 4.023 13 C -0.162 4.162 14 C -0.154 4.154 15 C 0.058 3.942 16 H 0.067 0.933 17 N -0.300 5.300 18 C -0.354 4.354 19 H 0.076 0.924 20 C -0.236 4.236 21 N -0.571 5.571 22 Si 0.781 3.219 23 H -0.193 1.193 24 H -0.226 1.226 25 H -0.225 1.225 26 C 0.005 3.995 27 C -0.007 4.007 28 O -0.378 6.378 29 C -0.001 4.001 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.250 0.750 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.095 0.905 48 H 0.062 0.938 49 H 0.056 0.944 50 H 0.221 0.779 51 H 0.065 0.935 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.250 2.347 -0.865 20.404 hybrid contribution 1.719 -0.039 0.211 1.732 sum -18.532 2.308 -0.655 18.686 Atomic orbital electron populations 1.21699 0.93331 1.01615 1.02278 1.21886 0.97868 0.92892 1.03751 1.20849 0.88499 0.96564 0.91373 0.86798 1.46009 1.18253 1.56431 1.16109 1.21436 0.80165 0.77415 0.91026 1.21912 1.04018 1.02162 0.94456 1.90706 1.56037 1.61115 1.37789 1.21083 0.90637 0.75820 0.83158 1.90672 1.70004 1.51924 1.33481 1.48293 1.07158 1.69277 1.08233 1.22165 0.97039 1.00153 0.82979 1.21899 0.95025 0.99280 0.99961 1.21807 0.94896 1.01491 0.97232 1.20776 0.84381 0.95422 0.93581 0.93345 1.43910 1.00745 1.07317 1.78071 1.19012 0.97678 0.99434 1.19297 0.92382 1.25529 1.01152 1.00642 0.96258 1.70085 1.17727 1.48259 1.20995 0.85470 0.79377 0.78257 0.78812 1.19330 1.22582 1.22544 1.21072 1.00102 0.86024 0.92262 1.22796 0.94175 0.94338 0.89437 1.86761 1.78440 1.48900 1.23660 1.21880 0.78001 1.00370 0.99831 0.92317 0.93606 0.91638 0.91640 0.89156 0.75006 0.86982 0.88255 0.88554 0.89820 0.87259 0.87848 0.91622 0.92948 0.92579 0.94546 0.94799 0.90541 0.93814 0.94440 0.77857 0.93455 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.45 71.98 0.61 -1.82 16 2 C -0.13 -2.44 5.39 30.59 0.16 -2.27 16 3 C 0.14 3.12 1.84 44.24 0.08 3.20 16 4 H 0.11 2.55 6.04 -2.39 -0.01 2.53 16 5 N -0.71 -15.08 4.95 -446.10 -2.21 -17.29 16 6 C 0.51 10.14 6.33 87.66 0.55 10.69 16 7 C -0.17 -1.88 10.30 71.24 0.73 -1.15 16 8 O -0.58 -14.94 14.23 -3.06 -0.04 -14.98 16 9 C 0.51 15.54 6.93 87.66 0.61 16.15 16 10 O -0.58 -22.47 15.38 -3.03 -0.05 -22.52 16 11 N -0.60 -18.32 2.97 -818.88 -2.43 -20.75 16 12 C 0.10 2.15 5.68 86.36 0.49 2.64 16 13 C -0.12 -2.76 6.08 30.67 0.19 -2.57 16 14 C -0.11 -3.68 5.11 30.62 0.16 -3.52 16 15 C 0.17 6.54 2.78 45.07 0.13 6.67 16 16 H 0.05 1.90 7.88 -2.39 -0.02 1.88 16 17 N -0.58 -27.72 2.36 -677.62 -1.60 -29.32 16 18 C -0.22 -11.88 8.00 84.03 0.67 -11.20 16 19 H 0.06 3.07 6.85 -2.91 -0.02 3.05 16 20 C -0.04 -2.26 4.94 84.86 0.42 -1.84 16 21 N -0.92 -54.89 11.22 21.65 0.24 -54.64 16 22 Si 0.95 46.29 29.61 68.60 2.03 48.32 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 25 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 26 C 0.13 6.22 5.56 86.38 0.48 6.70 16 27 C 0.07 2.74 7.38 71.98 0.53 3.27 16 28 O -0.57 -22.98 13.43 -148.98 -2.00 -24.99 16 29 C 0.12 5.00 5.75 86.36 0.50 5.50 16 30 H 0.06 1.16 7.59 -2.39 -0.02 1.15 16 31 H 0.04 0.92 5.75 -2.39 -0.01 0.91 16 32 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.54 7.11 -2.39 -0.02 1.52 16 35 H 0.41 8.54 7.76 -92.70 -0.72 7.82 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.11 1.81 5.04 -2.38 -0.01 1.80 16 41 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 42 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.05 1.84 7.02 -2.39 -0.02 1.82 16 44 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 46 H 0.03 1.55 8.05 -2.39 -0.02 1.53 16 47 H 0.08 4.27 5.23 -2.38 -0.01 4.26 16 48 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 49 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 50 H 0.38 10.47 9.12 -74.06 -0.68 9.80 16 51 H 0.05 2.28 7.03 -2.38 -0.02 2.26 16 52 H 0.05 2.41 7.50 -2.39 -0.02 2.39 16 Total: -1.00 -74.56 401.84 -0.20 -74.77 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.45 Total: 30.94 kcal Atomic # 6 Polarization: 24.14 SS G_CDS: 6.31 Total: 30.45 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -6.00 Total: -122.00 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: -2.09 Total: -62.48 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -74.56 -0.20 -74.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707209423.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.563 kcal (2) G-P(sol) polarization free energy of solvation -74.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds