Wall clock time and date at job start Wed Apr 1 2020 00:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47533 * 2 1 4 4 H 1.08999 * 110.27595 * 52.90769 * 3 2 1 5 5 O 1.43654 * 110.39094 * 290.76330 * 3 2 1 6 6 C 1.43236 * 109.97052 * 216.61470 * 5 3 2 7 7 C 1.54389 * 107.58944 * 1.70912 * 6 5 3 8 8 C 1.54947 * 110.31127 * 175.00101 * 3 2 1 9 9 H 1.09001 * 111.12572 * 37.49628 * 8 3 2 10 10 C 1.50701 * 111.12436 * 273.37809 * 8 3 2 11 11 O 1.21280 * 119.99781 * 359.97438 * 10 8 3 12 12 N 1.34771 * 119.99622 * 180.02562 * 10 8 3 13 13 C 1.46505 * 119.99622 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 16 16 N 1.46901 * 109.47859 * 179.97438 * 15 14 13 17 17 C 1.46896 * 110.99661 * 66.04215 * 16 15 14 18 18 C 1.46888 * 111.00648 * 190.00261 * 16 15 14 19 19 C 1.50698 * 109.47466 * 169.99695 * 18 16 15 20 20 O 1.21297 * 119.99979 * 0.02562 * 19 18 16 21 21 N 1.34780 * 120.00290 * 179.97438 * 19 18 16 22 22 C 1.37098 * 120.00260 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99642 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00299 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99701 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00165 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46942 * 90.00176 * 26 24 22 28 28 H 1.48494 * 109.47013 * 210.00425 * 26 24 22 29 29 H 1.48499 * 109.46878 * 330.00116 * 26 24 22 30 30 H 1.09000 * 109.46956 * 59.99764 * 1 2 3 31 31 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46764 * 300.00572 * 1 2 3 33 33 H 1.09004 * 109.47448 * 239.99721 * 2 1 3 34 34 H 1.09002 * 109.47648 * 119.99958 * 2 1 3 35 35 H 1.08998 * 109.83209 * 121.22417 * 6 5 3 36 36 H 1.08999 * 109.82530 * 242.11091 * 6 5 3 37 37 H 1.09003 * 110.84735 * 263.17228 * 7 6 5 38 38 H 1.08993 * 110.84970 * 139.54864 * 7 6 5 39 39 H 0.96996 * 120.00772 * 359.97438 * 12 10 8 40 40 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 41 41 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 42 42 H 1.09002 * 109.47153 * 300.00008 * 14 13 12 43 43 H 1.08998 * 109.47533 * 59.99637 * 14 13 12 44 44 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 45 45 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 46 46 H 1.09000 * 109.47279 * 60.00622 * 17 16 15 47 47 H 1.09005 * 109.47207 * 180.02562 * 17 16 15 48 48 H 1.09004 * 109.47798 * 300.00405 * 17 16 15 49 49 H 1.09003 * 109.46911 * 289.99990 * 18 16 15 50 50 H 1.09002 * 109.47379 * 49.99612 * 18 16 15 51 51 H 0.96996 * 119.99721 * 0.02562 * 21 19 18 52 52 H 0.96999 * 119.99831 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5847 2.0042 0.8156 5 8 1.7569 2.0735 -1.2591 6 6 2.8318 2.9485 -1.6204 7 6 3.9115 2.8395 -0.5222 8 6 3.5842 1.4670 0.1266 9 1 4.0373 0.6489 -0.4334 10 6 4.0112 1.4335 1.5715 11 8 3.1759 1.3937 2.4499 12 7 5.3213 1.4488 1.8874 13 6 5.7364 1.4169 3.2920 14 6 7.2641 1.4422 3.3730 15 6 7.6977 1.4095 4.8399 16 7 9.1644 1.4332 4.9177 17 6 9.6971 2.7101 4.4242 18 6 9.6234 1.1653 6.2871 19 6 11.1155 0.9541 6.2846 20 8 11.7357 1.0208 5.2443 21 7 11.7611 0.6922 7.4384 22 6 13.1186 0.5007 7.4362 23 1 13.6707 0.5600 6.5099 24 6 13.7840 0.2302 8.6255 25 7 13.1122 0.1585 9.7527 26 14 15.6338 -0.0302 8.6226 27 1 16.3173 1.2725 8.8256 28 1 16.0045 -0.9600 9.7194 29 1 16.0500 -0.6099 7.3203 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.2490 2.6449 -2.5805 36 1 2.4684 3.9743 -1.6830 37 1 3.8091 3.6460 0.2039 38 1 4.9100 2.8338 -0.9591 39 1 5.9893 1.4810 1.1849 40 1 5.3303 2.2853 3.8108 41 1 5.3632 0.5063 3.7606 42 1 7.6699 0.5736 2.8544 43 1 7.6378 2.3525 2.9043 44 1 7.2919 2.2783 5.3582 45 1 7.3240 0.4993 5.3090 46 1 9.3019 3.5266 5.0286 47 1 10.7850 2.7006 4.4926 48 1 9.4000 2.8505 3.3849 49 1 9.3776 2.0141 6.9253 50 1 9.1305 0.2704 6.6670 51 1 11.2652 0.6393 8.2703 52 1 13.5767 -0.0308 10.5830 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707392300.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:14 Heat of formation + Delta-G solvation = -127.371877 kcal Electronic energy + Delta-G solvation = -29107.469820 eV Core-core repulsion = 24913.558391 eV Total energy + Delta-G solvation = -4193.911429 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.89991 -39.07346 -38.65550 -36.96971 -35.34095 -33.94156 -33.87060 -33.05673 -31.47431 -31.20263 -28.91674 -27.89160 -26.62276 -24.96989 -24.17320 -23.18898 -22.44306 -21.31281 -21.12281 -20.24701 -19.16605 -18.10059 -17.83803 -16.95789 -16.46426 -16.13194 -16.01793 -15.68796 -15.26293 -15.24734 -14.76070 -14.61328 -14.46033 -14.28148 -13.89762 -13.78074 -13.59438 -13.46051 -13.40447 -13.34740 -12.72873 -12.34899 -12.19924 -12.15819 -11.91739 -11.88094 -11.75859 -11.49868 -11.42526 -11.28340 -11.27306 -11.21248 -11.07941 -10.93949 -10.77443 -10.40140 -10.24176 -10.21590 -9.89202 -9.48971 -9.42979 -8.47551 -7.99278 -7.87867 -6.42748 -3.83638 2.20264 2.70108 3.16706 3.25532 3.30138 3.31361 3.86552 3.89164 3.95843 4.12479 4.20617 4.22846 4.52404 4.64890 4.67181 4.76225 4.80439 4.89901 4.94275 5.00303 5.05482 5.06620 5.19039 5.23999 5.24273 5.35918 5.38854 5.45445 5.49415 5.54868 5.55227 5.66672 5.67939 5.70772 5.84234 5.88584 5.93469 5.96013 5.98789 6.03312 6.10523 6.27070 6.52275 6.57164 7.08452 7.23513 7.36018 7.54136 7.81054 8.05334 8.60798 9.17072 9.53464 10.05252 10.74976 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032370 B = 0.001414 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.791363 B =19803.246619 C =20229.321557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.101 3.899 4 H 0.087 0.913 5 O -0.377 6.377 6 C 0.053 3.947 7 C -0.145 4.145 8 C -0.147 4.147 9 H 0.114 0.886 10 C 0.525 3.475 11 O -0.534 6.534 12 N -0.725 5.725 13 C 0.119 3.881 14 C -0.127 4.127 15 C 0.058 3.942 16 N -0.519 5.519 17 C 0.020 3.980 18 C 0.046 3.954 19 C 0.444 3.556 20 O -0.579 6.579 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.402 0.598 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.033 0.967 45 H 0.076 0.924 46 H 0.013 0.987 47 H 0.096 0.904 48 H 0.060 0.940 49 H 0.047 0.953 50 H 0.088 0.912 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.839 4.216 -18.651 29.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C 0.043 3.957 4 H 0.104 0.896 5 O -0.296 6.296 6 C -0.024 4.024 7 C -0.183 4.183 8 C -0.168 4.168 9 H 0.132 0.868 10 C 0.311 3.689 11 O -0.411 6.411 12 N -0.377 5.377 13 C -0.005 4.005 14 C -0.165 4.165 15 C -0.071 4.071 16 N -0.243 5.243 17 C -0.128 4.128 18 C -0.086 4.086 19 C 0.229 3.771 20 O -0.463 6.463 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.236 0.764 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.094 0.906 46 H 0.032 0.968 47 H 0.114 0.886 48 H 0.078 0.922 49 H 0.065 0.935 50 H 0.106 0.894 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.946 3.781 -18.916 29.219 hybrid contribution 0.964 0.544 0.996 1.489 sum -20.982 4.325 -17.920 27.930 Atomic orbital electron populations 1.21691 0.94971 1.01614 1.02259 1.21651 0.97227 0.94273 1.02619 1.22871 0.91056 0.94966 0.86762 0.89568 1.88440 1.42434 1.60406 1.38347 1.23089 0.87001 0.94806 0.97476 1.23117 1.00830 0.95851 0.98518 1.23089 0.99000 1.00391 0.94361 0.86841 1.20110 0.82504 0.76018 0.90317 1.90733 1.51366 1.49055 1.49911 1.46011 1.07144 1.75238 1.09296 1.21375 0.95011 1.02594 0.81478 1.21774 0.92941 1.03700 0.98128 1.22001 0.88582 1.01109 0.95419 1.61539 1.06934 1.34054 1.21745 1.22577 1.03614 0.87811 0.98758 1.21863 0.96273 1.01217 0.89205 1.19736 0.88124 0.84448 0.84778 1.90479 1.68047 1.56217 1.31536 1.41871 1.08370 1.62028 1.07813 1.19697 0.82541 1.45133 0.95526 0.87915 1.25260 1.00574 0.97354 0.94736 1.69614 1.36734 1.49295 0.98658 0.85857 0.82203 0.78187 0.78037 1.20444 1.20927 1.19416 0.92159 0.92706 0.92621 0.91374 0.90427 0.90906 0.91045 0.89901 0.89028 0.76364 0.91428 0.91123 0.90131 0.91103 0.94884 0.90576 0.96801 0.88603 0.92156 0.93451 0.89367 0.77488 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.85 37.16 0.37 -0.75 16 2 C -0.12 -0.94 5.67 -26.73 -0.15 -1.09 16 3 C 0.10 0.85 2.55 -25.70 -0.07 0.78 16 4 H 0.09 0.87 7.38 -51.93 -0.38 0.49 16 5 O -0.38 -3.28 10.81 -35.23 -0.38 -3.67 16 6 C 0.05 0.31 7.79 37.89 0.30 0.60 16 7 C -0.15 -0.73 6.49 -24.78 -0.16 -0.89 16 8 C -0.15 -0.98 2.90 -89.52 -0.26 -1.24 16 9 H 0.11 0.59 8.06 -51.93 -0.42 0.17 16 10 C 0.53 4.75 7.15 -10.99 -0.08 4.67 16 11 O -0.53 -6.88 15.72 5.56 0.09 -6.79 16 12 N -0.73 -5.39 5.56 -60.29 -0.33 -5.73 16 13 C 0.12 1.04 5.67 -4.04 -0.02 1.01 16 14 C -0.13 -1.18 5.25 -26.74 -0.14 -1.32 16 15 C 0.06 0.67 4.96 -3.83 -0.02 0.66 16 16 N -0.52 -8.24 4.50 -244.38 -1.10 -9.34 16 17 C 0.02 0.31 8.96 60.06 0.54 0.85 16 18 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 19 C 0.44 10.32 7.48 -10.98 -0.08 10.24 16 20 O -0.58 -15.30 13.91 5.54 0.08 -15.22 16 21 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 22 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 26 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 29 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 30 H 0.06 0.47 7.99 -51.93 -0.42 0.05 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.47 8.03 -51.93 -0.42 0.05 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.40 2.03 8.47 -40.82 -0.35 1.68 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.63 6.55 -51.93 -0.34 0.29 16 44 H 0.03 0.37 8.12 -51.93 -0.42 -0.06 16 45 H 0.08 0.85 7.93 -51.93 -0.41 0.43 16 46 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.10 1.84 5.82 -51.93 -0.30 1.54 16 48 H 0.06 0.79 6.47 -51.93 -0.34 0.45 16 49 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 50 H 0.09 1.40 7.93 -51.93 -0.41 0.98 16 51 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 52 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 418.86 15.07 6.31 6.31 Total: -1.00 -33.22 418.86 -8.85 -42.07 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -9.11 Total: 8.00 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -0.05 Total: 6.38 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.77 Total: -52.94 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.22 Total: -25.68 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.22 -8.85 -42.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707392300.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.300 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds