Wall clock time and date at job start Wed Apr 1 2020 00:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47533 * 2 1 4 4 H 1.08999 * 110.27595 * 52.90769 * 3 2 1 5 5 O 1.43654 * 110.39094 * 290.76330 * 3 2 1 6 6 C 1.43236 * 109.97052 * 216.61470 * 5 3 2 7 7 C 1.54389 * 107.58944 * 1.70912 * 6 5 3 8 8 C 1.54947 * 110.31127 * 175.00101 * 3 2 1 9 9 H 1.09001 * 111.12572 * 37.49628 * 8 3 2 10 10 C 1.50701 * 111.12436 * 273.37809 * 8 3 2 11 11 O 1.21280 * 119.99781 * 359.97438 * 10 8 3 12 12 N 1.34771 * 119.99622 * 180.02562 * 10 8 3 13 13 C 1.46505 * 119.99622 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 16 16 N 1.46901 * 109.47859 * 179.97438 * 15 14 13 17 17 C 1.46896 * 110.99661 * 66.04215 * 16 15 14 18 18 C 1.46888 * 111.00648 * 190.00261 * 16 15 14 19 19 C 1.50698 * 109.47466 * 169.99695 * 18 16 15 20 20 O 1.21297 * 119.99979 * 0.02562 * 19 18 16 21 21 N 1.34780 * 120.00290 * 179.97438 * 19 18 16 22 22 C 1.37098 * 120.00260 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99642 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00299 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99701 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00165 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46942 * 90.00176 * 26 24 22 28 28 H 1.48494 * 109.47013 * 210.00425 * 26 24 22 29 29 H 1.48499 * 109.46878 * 330.00116 * 26 24 22 30 30 H 1.09000 * 109.46956 * 59.99764 * 1 2 3 31 31 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46764 * 300.00572 * 1 2 3 33 33 H 1.09004 * 109.47448 * 239.99721 * 2 1 3 34 34 H 1.09002 * 109.47648 * 119.99958 * 2 1 3 35 35 H 1.08998 * 109.83209 * 121.22417 * 6 5 3 36 36 H 1.08999 * 109.82530 * 242.11091 * 6 5 3 37 37 H 1.09003 * 110.84735 * 263.17228 * 7 6 5 38 38 H 1.08993 * 110.84970 * 139.54864 * 7 6 5 39 39 H 0.96996 * 120.00772 * 359.97438 * 12 10 8 40 40 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 41 41 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 42 42 H 1.09002 * 109.47153 * 300.00008 * 14 13 12 43 43 H 1.08998 * 109.47533 * 59.99637 * 14 13 12 44 44 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 45 45 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 46 46 H 1.09000 * 109.47279 * 60.00622 * 17 16 15 47 47 H 1.09005 * 109.47207 * 180.02562 * 17 16 15 48 48 H 1.09004 * 109.47798 * 300.00405 * 17 16 15 49 49 H 1.09003 * 109.46911 * 289.99990 * 18 16 15 50 50 H 1.09002 * 109.47379 * 49.99612 * 18 16 15 51 51 H 0.96996 * 119.99721 * 0.02562 * 21 19 18 52 52 H 0.96999 * 119.99831 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5847 2.0042 0.8156 5 8 1.7569 2.0735 -1.2591 6 6 2.8318 2.9485 -1.6204 7 6 3.9115 2.8395 -0.5222 8 6 3.5842 1.4670 0.1266 9 1 4.0373 0.6489 -0.4334 10 6 4.0112 1.4335 1.5715 11 8 3.1759 1.3937 2.4499 12 7 5.3213 1.4488 1.8874 13 6 5.7364 1.4169 3.2920 14 6 7.2641 1.4422 3.3730 15 6 7.6977 1.4095 4.8399 16 7 9.1644 1.4332 4.9177 17 6 9.6971 2.7101 4.4242 18 6 9.6234 1.1653 6.2871 19 6 11.1155 0.9541 6.2846 20 8 11.7357 1.0208 5.2443 21 7 11.7611 0.6922 7.4384 22 6 13.1186 0.5007 7.4362 23 1 13.6707 0.5600 6.5099 24 6 13.7840 0.2302 8.6255 25 7 13.1122 0.1585 9.7527 26 14 15.6338 -0.0302 8.6226 27 1 16.3173 1.2725 8.8256 28 1 16.0045 -0.9600 9.7194 29 1 16.0500 -0.6099 7.3203 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.2490 2.6449 -2.5805 36 1 2.4684 3.9743 -1.6830 37 1 3.8091 3.6460 0.2039 38 1 4.9100 2.8338 -0.9591 39 1 5.9893 1.4810 1.1849 40 1 5.3303 2.2853 3.8108 41 1 5.3632 0.5063 3.7606 42 1 7.6699 0.5736 2.8544 43 1 7.6378 2.3525 2.9043 44 1 7.2919 2.2783 5.3582 45 1 7.3240 0.4993 5.3090 46 1 9.3019 3.5266 5.0286 47 1 10.7850 2.7006 4.4926 48 1 9.4000 2.8505 3.3849 49 1 9.3776 2.0141 6.9253 50 1 9.1305 0.2704 6.6670 51 1 11.2652 0.6393 8.2703 52 1 13.5767 -0.0308 10.5830 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707392300.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:13 Heat of formation + Delta-G solvation = -152.567336 kcal Electronic energy + Delta-G solvation = -29108.562377 eV Core-core repulsion = 24913.558391 eV Total energy + Delta-G solvation = -4195.003986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.53525 -40.38353 -39.67565 -38.25070 -36.29923 -35.78296 -34.52185 -33.69590 -33.26678 -32.25141 -29.53329 -29.26990 -27.64051 -26.61393 -25.05576 -23.96478 -23.20082 -22.08724 -21.83724 -20.97917 -20.95917 -19.84172 -18.70986 -17.86383 -17.48974 -17.06757 -16.91276 -16.58607 -16.55560 -16.31269 -16.07129 -15.77692 -15.55236 -15.25475 -14.98956 -14.91285 -14.75401 -14.40404 -14.29212 -13.95825 -13.74029 -13.47460 -13.44294 -13.15984 -13.01728 -12.84781 -12.71212 -12.68772 -12.51083 -12.42212 -12.38262 -12.31712 -12.11332 -11.92886 -11.79015 -11.64436 -11.63397 -11.44472 -10.96650 -10.47469 -10.26535 -10.13300 -9.98664 -9.19100 -8.45352 -5.93958 1.38688 1.42448 1.51968 1.55122 2.03574 2.07153 2.29876 2.74830 2.83687 3.21672 3.38273 3.44257 3.57091 3.68986 3.97218 4.02235 4.08624 4.13833 4.14962 4.19764 4.22119 4.33871 4.40759 4.41477 4.49079 4.51765 4.55986 4.61513 4.64916 4.76486 4.78132 4.80179 4.82003 4.85486 4.96723 5.05332 5.07409 5.10289 5.20209 5.24257 5.29199 5.36904 5.41971 5.42682 5.89587 6.03257 6.08488 6.24082 6.48790 6.62242 7.14496 7.17073 7.58307 8.14094 8.72044 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032370 B = 0.001414 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.791363 B =19803.246619 C =20229.321557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.099 3.901 4 H 0.061 0.939 5 O -0.395 6.395 6 C 0.045 3.955 7 C -0.138 4.138 8 C -0.140 4.140 9 H 0.136 0.864 10 C 0.524 3.476 11 O -0.578 6.578 12 N -0.713 5.713 13 C 0.127 3.873 14 C -0.113 4.113 15 C 0.057 3.943 16 N -0.537 5.537 17 C 0.025 3.975 18 C 0.057 3.943 19 C 0.441 3.559 20 O -0.614 6.614 21 N -0.576 5.576 22 C -0.332 4.332 23 H 0.080 0.920 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.273 1.273 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.417 0.583 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.044 0.956 45 H 0.082 0.918 46 H 0.027 0.973 47 H 0.053 0.947 48 H 0.085 0.915 49 H 0.066 0.934 50 H 0.109 0.891 51 H 0.395 0.605 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.860 4.319 -19.691 29.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C 0.041 3.959 4 H 0.079 0.921 5 O -0.315 6.315 6 C -0.031 4.031 7 C -0.175 4.175 8 C -0.161 4.161 9 H 0.153 0.847 10 C 0.311 3.689 11 O -0.458 6.458 12 N -0.365 5.365 13 C 0.002 3.998 14 C -0.151 4.151 15 C -0.071 4.071 16 N -0.261 5.261 17 C -0.123 4.123 18 C -0.075 4.075 19 C 0.229 3.771 20 O -0.500 6.500 21 N -0.213 5.213 22 C -0.462 4.462 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.816 3.184 27 H -0.197 1.197 28 H -0.197 1.197 29 H -0.198 1.198 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.138 0.862 39 H 0.253 0.747 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.101 0.899 46 H 0.045 0.955 47 H 0.072 0.928 48 H 0.104 0.896 49 H 0.083 0.917 50 H 0.127 0.873 51 H 0.229 0.771 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.967 3.895 -19.971 29.943 hybrid contribution 0.907 0.548 1.265 1.650 sum -21.060 4.444 -18.707 28.517 Atomic orbital electron populations 1.21678 0.95036 1.02090 1.01613 1.21637 0.97258 0.94096 1.02667 1.22767 0.92275 0.94755 0.86081 0.92147 1.88419 1.43936 1.60987 1.38167 1.23306 0.86653 0.94702 0.98447 1.23133 1.02083 0.94351 0.97962 1.23064 0.97780 1.02249 0.93021 0.84667 1.20494 0.82418 0.75061 0.90906 1.90719 1.52574 1.51158 1.51306 1.45893 1.07084 1.74272 1.09298 1.21202 0.94476 1.01993 0.82090 1.21617 0.92989 1.03998 0.96523 1.22094 0.85734 1.01998 0.97270 1.61506 1.09590 1.34463 1.20565 1.22467 1.00941 0.88236 1.00668 1.21740 0.91794 1.02916 0.91009 1.20790 0.90545 0.82238 0.83562 1.90457 1.69693 1.57129 1.32695 1.41950 1.07820 1.62920 1.08626 1.19665 0.84010 1.47297 0.95229 0.90249 1.26027 1.04721 0.96473 0.94060 1.69677 1.38286 1.49233 0.99048 0.84930 0.76994 0.78424 0.78008 1.19669 1.19656 1.19751 0.92522 0.91662 0.93510 0.90275 0.91213 0.89145 0.90649 0.90707 0.86156 0.74653 0.91946 0.91947 0.90373 0.90249 0.93739 0.89918 0.95487 0.92845 0.89640 0.91652 0.87335 0.77090 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.85 71.98 0.71 -1.50 16 2 C -0.12 -1.81 5.67 30.59 0.17 -1.64 16 3 C 0.10 1.62 2.55 31.26 0.08 1.70 16 4 H 0.06 1.29 7.38 -2.39 -0.02 1.27 16 5 O -0.39 -6.55 10.81 -148.98 -1.61 -8.16 16 6 C 0.04 0.44 7.79 72.45 0.56 1.00 16 7 C -0.14 -1.06 6.49 31.86 0.21 -0.86 16 8 C -0.14 -1.63 2.90 -10.08 -0.03 -1.65 16 9 H 0.14 1.00 8.06 -2.39 -0.02 0.98 16 10 C 0.52 8.86 7.15 87.66 0.63 9.48 16 11 O -0.58 -14.90 15.72 -3.03 -0.05 -14.95 16 12 N -0.71 -9.08 5.56 -463.06 -2.57 -11.65 16 13 C 0.13 1.96 5.67 86.38 0.49 2.45 16 14 C -0.11 -1.79 5.25 30.59 0.16 -1.63 16 15 C 0.06 1.19 4.96 86.30 0.43 1.61 16 16 N -0.54 -16.13 4.50 -927.09 -4.17 -20.31 16 17 C 0.02 0.73 8.96 127.69 1.14 1.88 16 18 C 0.06 1.91 5.45 85.56 0.47 2.38 16 19 C 0.44 20.71 7.48 87.66 0.66 21.37 16 20 O -0.61 -33.21 13.91 -3.08 -0.04 -33.26 16 21 N -0.58 -29.36 5.29 -306.98 -1.62 -30.98 16 22 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 23 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 24 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 25 N -0.92 -49.59 13.05 21.66 0.28 -49.31 16 26 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 28 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 29 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 30 H 0.06 0.88 7.99 -2.39 -0.02 0.86 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.72 8.03 -2.39 -0.02 0.70 16 38 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.42 2.92 8.47 -92.71 -0.79 2.14 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.15 6.55 -2.39 -0.02 1.13 16 44 H 0.04 0.85 8.12 -2.39 -0.02 0.83 16 45 H 0.08 1.63 7.93 -2.39 -0.02 1.61 16 46 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.05 2.06 5.82 -2.38 -0.01 2.04 16 48 H 0.09 2.04 6.47 -2.38 -0.02 2.02 16 49 H 0.07 1.99 8.12 -2.39 -0.02 1.97 16 50 H 0.11 3.23 7.93 -2.39 -0.02 3.21 16 51 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 52 H 0.28 13.97 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -73.74 418.86 -1.40 -75.14 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: -0.60 Total: 32.38 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 6.96 Total: 16.39 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -8.08 Total: -112.25 kcal Atomic # 8 Polarization: -54.67 SS G_CDS: -1.70 Total: -56.37 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -73.74 -1.40 -75.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707392300.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.428 kcal (2) G-P(sol) polarization free energy of solvation -73.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds