Wall clock time and date at job start Wed Apr 1 2020 01:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47347 * 2 1 4 4 H 1.08998 * 109.47292 * 305.47679 * 3 2 1 5 5 O 1.42899 * 109.47174 * 65.47787 * 3 2 1 6 6 C 1.42905 * 113.99952 * 257.83825 * 5 3 2 7 7 C 1.50700 * 109.47238 * 185.47417 * 3 2 1 8 8 O 1.21280 * 120.00230 * 245.00088 * 7 3 2 9 9 N 1.34779 * 119.99927 * 65.00169 * 7 3 2 10 10 C 1.46498 * 120.00166 * 180.02562 * 9 7 3 11 11 C 1.52996 * 109.46935 * 180.02562 * 10 9 7 12 12 H 1.08991 * 109.50924 * 54.92070 * 11 10 9 13 13 C 1.53123 * 109.50461 * 294.79822 * 11 10 9 14 14 C 1.53113 * 109.16126 * 182.40881 * 13 11 10 15 15 C 1.53039 * 109.27993 * 57.65442 * 14 13 11 16 16 N 1.46843 * 109.52572 * 300.81991 * 15 14 13 17 17 C 1.46900 * 111.00109 * 185.83646 * 16 15 14 18 18 C 1.50701 * 109.46726 * 65.79138 * 17 16 15 19 19 O 1.21289 * 120.00206 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99671 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99757 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00264 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00026 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99725 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00262 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46847 * 59.99740 * 25 23 21 27 27 H 1.48493 * 109.47041 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46807 * 300.00007 * 25 23 21 29 29 C 1.46849 * 111.19460 * 61.74074 * 16 15 14 30 30 H 1.09003 * 109.47277 * 175.08998 * 1 2 3 31 31 H 1.08994 * 109.46914 * 295.09586 * 1 2 3 32 32 H 1.09002 * 109.46689 * 55.09843 * 1 2 3 33 33 H 1.09001 * 109.46916 * 120.00223 * 2 1 3 34 34 H 1.09006 * 109.46793 * 239.99538 * 2 1 3 35 35 H 1.09004 * 109.46642 * 65.44942 * 6 5 3 36 36 H 1.08998 * 109.47312 * 185.44666 * 6 5 3 37 37 H 1.09003 * 109.47076 * 305.45126 * 6 5 3 38 38 H 0.97003 * 119.99684 * 359.97438 * 9 7 3 39 39 H 1.09002 * 109.46762 * 299.99828 * 10 9 7 40 40 H 1.09000 * 109.46865 * 59.99529 * 10 9 7 41 41 H 1.09002 * 109.52159 * 302.31596 * 13 11 10 42 42 H 1.08996 * 109.51781 * 62.49924 * 13 11 10 43 43 H 1.09000 * 109.50293 * 297.71445 * 14 13 11 44 44 H 1.09004 * 109.50071 * 177.59446 * 14 13 11 45 45 H 1.09002 * 109.45919 * 180.80001 * 15 14 13 46 46 H 1.09003 * 109.45016 * 60.83279 * 15 14 13 47 47 H 1.09002 * 109.46945 * 185.78833 * 17 16 15 48 48 H 1.08993 * 109.47129 * 305.79068 * 17 16 15 49 49 H 0.97003 * 120.00118 * 0.02562 * 20 18 17 50 50 H 0.97006 * 119.99761 * 180.02562 * 24 23 21 51 51 H 1.08998 * 109.46233 * 178.24434 * 29 16 15 52 52 H 1.08993 * 109.46328 * 58.27515 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5989 1.9838 -0.8369 5 8 1.6717 2.0779 1.2257 6 6 0.5495 2.9553 1.1112 7 6 3.5410 1.4445 -0.1355 8 8 4.2312 1.8587 0.7716 9 7 4.1163 0.9861 -1.2649 10 6 5.5753 0.9876 -1.3965 11 6 5.9646 0.4214 -2.7634 12 1 5.4562 0.9818 -3.5478 13 6 5.5572 -1.0526 -2.8411 14 6 6.0040 -1.6272 -4.1881 15 6 7.5171 -1.4516 -4.3355 16 7 7.8558 -0.0250 -4.2552 17 6 9.2821 0.1938 -4.5305 18 6 9.5789 -0.1706 -5.9623 19 8 8.6897 -0.5726 -6.6826 20 7 10.8323 -0.0489 -6.4426 21 6 11.1024 -0.3809 -7.7451 22 1 10.3109 -0.7397 -8.3863 23 6 12.3947 -0.2559 -8.2402 24 7 13.3580 0.1800 -7.4599 25 14 12.7628 -0.7077 -10.0150 26 1 11.9478 0.1410 -10.9210 27 1 14.2044 -0.4859 -10.2935 28 1 12.4284 -2.1367 -10.2416 29 6 7.4789 0.5375 -2.9521 30 1 -0.3634 -1.0239 -0.0880 31 1 -0.3633 0.4358 0.9306 32 1 -0.3633 0.5880 -0.8429 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 -0.3399 2.3767 0.8613 36 1 0.3932 3.4708 2.0587 37 1 0.7392 3.6873 0.3262 38 1 3.5642 0.6545 -1.9903 39 1 5.9471 2.0084 -1.3072 40 1 6.0117 0.3720 -0.6100 41 1 6.0351 -1.6057 -2.0325 42 1 4.4742 -1.1363 -2.7504 43 1 5.4961 -1.0995 -4.9954 44 1 5.7547 -2.6875 -4.2322 45 1 7.8363 -1.8470 -5.2998 46 1 8.0247 -1.9911 -3.5358 47 1 9.5274 1.2427 -4.3641 48 1 9.8802 -0.4291 -3.8655 49 1 11.5433 0.2729 -5.8666 50 1 14.2601 0.2676 -7.8056 51 1 7.7705 1.5870 -2.9116 52 1 7.9869 -0.0112 -2.1591 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713211339.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:00 Heat of formation + Delta-G solvation = -126.076851 kcal Electronic energy + Delta-G solvation = -29947.445806 eV Core-core repulsion = 25753.590533 eV Total energy + Delta-G solvation = -4193.855272 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.44078 -39.35368 -38.17713 -37.61478 -35.37998 -34.04054 -33.77390 -32.82798 -31.37701 -31.15590 -28.90748 -27.51686 -26.62728 -25.29315 -24.63885 -22.88715 -22.59076 -21.70766 -20.74608 -19.66059 -19.15609 -17.92069 -17.72326 -17.44533 -16.35227 -16.03539 -15.69942 -15.52805 -15.16164 -15.01041 -14.81074 -14.61813 -14.41610 -14.18364 -14.04406 -13.75890 -13.66406 -13.40124 -13.34238 -12.99362 -12.69599 -12.58159 -12.39484 -12.21951 -12.09632 -11.87300 -11.82076 -11.49923 -11.41270 -11.30142 -11.06641 -11.01852 -10.68142 -10.47727 -10.45026 -10.34238 -10.30545 -10.20508 -9.68503 -9.45214 -9.32429 -8.42439 -7.97228 -7.83326 -6.41212 -3.82058 2.32417 2.56976 3.19936 3.25788 3.29862 3.53352 3.90663 3.96726 4.23020 4.24120 4.32495 4.44947 4.61657 4.69364 4.72119 4.79317 4.82566 4.90796 5.01725 5.05613 5.17613 5.23239 5.25097 5.25506 5.32553 5.41326 5.42243 5.49052 5.54066 5.56983 5.62062 5.71432 5.71878 5.75942 5.86968 5.93696 5.99686 6.06144 6.07777 6.19106 6.28930 6.45259 6.54576 6.58761 7.19628 7.31230 7.43815 7.55275 7.94787 8.06708 8.62427 9.18451 9.55142 10.06988 10.76417 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030819 B = 0.001682 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.322057 B =16644.829555 C =17076.854104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.137 4.137 3 C 0.073 3.927 4 H 0.088 0.912 5 O -0.357 6.357 6 C 0.024 3.976 7 C 0.507 3.493 8 O -0.520 6.520 9 N -0.725 5.725 10 C 0.126 3.874 11 C -0.095 4.095 12 H 0.088 0.912 13 C -0.115 4.115 14 C -0.113 4.113 15 C 0.050 3.950 16 N -0.514 5.514 17 C 0.046 3.954 18 C 0.444 3.556 19 O -0.578 6.578 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.063 3.937 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.400 0.600 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.020 0.980 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.076 0.924 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.163 1.118 15.370 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.175 4.175 3 C 0.011 3.989 4 H 0.106 0.894 5 O -0.274 6.274 6 C -0.072 4.072 7 C 0.292 3.708 8 O -0.395 6.395 9 N -0.379 5.379 10 C 0.002 3.998 11 C -0.114 4.114 12 H 0.106 0.894 13 C -0.152 4.152 14 C -0.150 4.150 15 C -0.077 4.077 16 N -0.238 5.238 17 C -0.085 4.085 18 C 0.229 3.771 19 O -0.462 6.462 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.066 4.066 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.235 0.765 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.122 0.878 46 H 0.039 0.961 47 H 0.107 0.893 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.094 0.906 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -23.198 1.405 15.331 27.841 hybrid contribution 0.845 -0.430 -0.471 1.059 sum -22.353 0.975 14.859 26.859 Atomic orbital electron populations 1.21837 0.94695 1.02465 1.02122 1.21947 0.97198 0.94616 1.03754 1.22058 0.92094 0.95492 0.89242 0.89396 1.88039 1.49192 1.60953 1.29236 1.23020 0.88380 0.92875 1.02941 1.20594 0.90093 0.77808 0.82354 1.90732 1.64458 1.45077 1.39206 1.45966 1.08212 1.65459 1.18268 1.21394 0.79306 1.01705 0.97390 1.21402 0.96999 0.97031 0.95953 0.89390 1.21668 1.00208 0.94964 0.98379 1.21537 0.96289 1.00291 0.96923 1.22277 0.95195 0.87508 1.02725 1.61457 1.17232 1.16543 1.28569 1.21833 0.88289 1.01826 0.96533 1.19732 0.83648 0.84999 0.88677 1.90476 1.45323 1.50954 1.59448 1.41867 1.07831 1.57998 1.12386 1.19644 0.94933 1.40942 0.87387 0.87978 1.25258 0.95268 0.97308 1.00091 1.69606 1.01756 1.46391 1.36553 0.85921 0.77129 0.79140 0.82036 1.19918 1.20999 1.19948 1.21987 0.93979 1.00259 0.90330 0.91914 0.91990 0.92580 0.90260 0.90342 0.93437 0.89217 0.93783 0.76481 0.91151 0.91324 0.92166 0.92301 0.90884 0.91824 0.87833 0.96140 0.89346 0.93513 0.77492 0.91837 0.90575 0.94911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 8.95 37.16 0.33 -0.37 16 2 C -0.14 -0.82 5.61 -26.73 -0.15 -0.97 16 3 C 0.07 0.57 2.67 -27.89 -0.07 0.49 16 4 H 0.09 0.47 7.60 -51.93 -0.39 0.08 16 5 O -0.36 -3.51 9.65 -55.09 -0.53 -4.04 16 6 C 0.02 0.15 10.48 101.05 1.06 1.20 16 7 C 0.51 5.39 7.18 -10.98 -0.08 5.31 16 8 O -0.52 -8.03 16.51 -14.30 -0.24 -8.27 16 9 N -0.72 -6.01 5.20 -60.30 -0.31 -6.32 16 10 C 0.13 1.20 5.07 -4.04 -0.02 1.18 16 11 C -0.09 -0.94 2.39 -90.54 -0.22 -1.16 16 12 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 13 C -0.11 -1.10 5.13 -26.61 -0.14 -1.23 16 14 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 15 C 0.05 0.79 5.10 -3.83 -0.02 0.77 16 16 N -0.51 -8.24 4.40 -236.11 -1.04 -9.27 16 17 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 18 C 0.44 10.32 7.46 -10.98 -0.08 10.23 16 19 O -0.58 -15.20 13.90 5.55 0.08 -15.12 16 20 N -0.56 -14.18 5.29 -10.96 -0.06 -14.23 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 25 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 C 0.06 0.78 4.74 -3.83 -0.02 0.76 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.31 6.60 -51.93 -0.34 -0.03 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.35 7.76 -51.93 -0.40 -0.05 16 35 H 0.05 0.20 6.12 -51.93 -0.32 -0.12 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.04 0.23 8.00 -51.93 -0.42 -0.19 16 38 H 0.40 2.29 7.38 -40.82 -0.30 1.99 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.44 7.26 -51.93 -0.38 0.07 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 2.01 5.78 -51.93 -0.30 1.71 16 46 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.09 1.42 7.99 -51.93 -0.41 1.00 16 48 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 49 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 50 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 51 H 0.08 0.89 8.02 -51.93 -0.42 0.47 16 52 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 412.07 15.07 6.21 6.21 Total: -1.00 -34.18 412.07 -9.04 -43.22 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -9.01 Total: 8.07 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 0.17 Total: 7.55 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.69 Total: -53.55 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.69 Total: -27.43 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.18 -9.04 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713211339.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.861 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds