Wall clock time and date at job start Wed Apr 1 2020 00:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47347 * 2 1 4 4 H 1.08998 * 109.47292 * 305.47679 * 3 2 1 5 5 O 1.42899 * 109.47174 * 65.47787 * 3 2 1 6 6 C 1.42905 * 113.99952 * 257.83825 * 5 3 2 7 7 C 1.50700 * 109.47238 * 185.47417 * 3 2 1 8 8 O 1.21280 * 120.00230 * 245.00088 * 7 3 2 9 9 N 1.34779 * 119.99927 * 65.00169 * 7 3 2 10 10 C 1.46498 * 120.00166 * 180.02562 * 9 7 3 11 11 C 1.52996 * 109.46935 * 180.02562 * 10 9 7 12 12 H 1.08991 * 109.50924 * 54.92070 * 11 10 9 13 13 C 1.53123 * 109.50461 * 294.79822 * 11 10 9 14 14 C 1.53113 * 109.16126 * 182.40881 * 13 11 10 15 15 C 1.53039 * 109.27993 * 57.65442 * 14 13 11 16 16 N 1.46843 * 109.52572 * 300.81991 * 15 14 13 17 17 C 1.46900 * 111.00109 * 185.83646 * 16 15 14 18 18 C 1.50701 * 109.46726 * 65.79138 * 17 16 15 19 19 O 1.21289 * 120.00206 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99671 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99757 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00264 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00026 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99725 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00262 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46847 * 59.99740 * 25 23 21 27 27 H 1.48493 * 109.47041 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46807 * 300.00007 * 25 23 21 29 29 C 1.46849 * 111.19460 * 61.74074 * 16 15 14 30 30 H 1.09003 * 109.47277 * 175.08998 * 1 2 3 31 31 H 1.08994 * 109.46914 * 295.09586 * 1 2 3 32 32 H 1.09002 * 109.46689 * 55.09843 * 1 2 3 33 33 H 1.09001 * 109.46916 * 120.00223 * 2 1 3 34 34 H 1.09006 * 109.46793 * 239.99538 * 2 1 3 35 35 H 1.09004 * 109.46642 * 65.44942 * 6 5 3 36 36 H 1.08998 * 109.47312 * 185.44666 * 6 5 3 37 37 H 1.09003 * 109.47076 * 305.45126 * 6 5 3 38 38 H 0.97003 * 119.99684 * 359.97438 * 9 7 3 39 39 H 1.09002 * 109.46762 * 299.99828 * 10 9 7 40 40 H 1.09000 * 109.46865 * 59.99529 * 10 9 7 41 41 H 1.09002 * 109.52159 * 302.31596 * 13 11 10 42 42 H 1.08996 * 109.51781 * 62.49924 * 13 11 10 43 43 H 1.09000 * 109.50293 * 297.71445 * 14 13 11 44 44 H 1.09004 * 109.50071 * 177.59446 * 14 13 11 45 45 H 1.09002 * 109.45919 * 180.80001 * 15 14 13 46 46 H 1.09003 * 109.45016 * 60.83279 * 15 14 13 47 47 H 1.09002 * 109.46945 * 185.78833 * 17 16 15 48 48 H 1.08993 * 109.47129 * 305.79068 * 17 16 15 49 49 H 0.97003 * 120.00118 * 0.02562 * 20 18 17 50 50 H 0.97006 * 119.99761 * 180.02562 * 24 23 21 51 51 H 1.08998 * 109.46233 * 178.24434 * 29 16 15 52 52 H 1.08993 * 109.46328 * 58.27515 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5989 1.9838 -0.8369 5 8 1.6717 2.0779 1.2257 6 6 0.5495 2.9553 1.1112 7 6 3.5410 1.4445 -0.1355 8 8 4.2312 1.8587 0.7716 9 7 4.1163 0.9861 -1.2649 10 6 5.5753 0.9876 -1.3965 11 6 5.9646 0.4214 -2.7634 12 1 5.4562 0.9818 -3.5478 13 6 5.5572 -1.0526 -2.8411 14 6 6.0040 -1.6272 -4.1881 15 6 7.5171 -1.4516 -4.3355 16 7 7.8558 -0.0250 -4.2552 17 6 9.2821 0.1938 -4.5305 18 6 9.5789 -0.1706 -5.9623 19 8 8.6897 -0.5726 -6.6826 20 7 10.8323 -0.0489 -6.4426 21 6 11.1024 -0.3809 -7.7451 22 1 10.3109 -0.7397 -8.3863 23 6 12.3947 -0.2559 -8.2402 24 7 13.3580 0.1800 -7.4599 25 14 12.7628 -0.7077 -10.0150 26 1 11.9478 0.1410 -10.9210 27 1 14.2044 -0.4859 -10.2935 28 1 12.4284 -2.1367 -10.2416 29 6 7.4789 0.5375 -2.9521 30 1 -0.3634 -1.0239 -0.0880 31 1 -0.3633 0.4358 0.9306 32 1 -0.3633 0.5880 -0.8429 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 -0.3399 2.3767 0.8613 36 1 0.3932 3.4708 2.0587 37 1 0.7392 3.6873 0.3262 38 1 3.5642 0.6545 -1.9903 39 1 5.9471 2.0084 -1.3072 40 1 6.0117 0.3720 -0.6100 41 1 6.0351 -1.6057 -2.0325 42 1 4.4742 -1.1363 -2.7504 43 1 5.4961 -1.0995 -4.9954 44 1 5.7547 -2.6875 -4.2322 45 1 7.8363 -1.8470 -5.2998 46 1 8.0247 -1.9911 -3.5358 47 1 9.5274 1.2427 -4.3641 48 1 9.8802 -0.4291 -3.8655 49 1 11.5433 0.2729 -5.8666 50 1 14.2601 0.2676 -7.8056 51 1 7.7705 1.5870 -2.9116 52 1 7.9869 -0.0112 -2.1591 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713211339.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:59 Heat of formation + Delta-G solvation = -151.411537 kcal Electronic energy + Delta-G solvation = -29948.544400 eV Core-core repulsion = 25753.590533 eV Total energy + Delta-G solvation = -4194.953867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.23895 -40.63183 -39.42041 -38.62682 -36.45944 -35.82170 -34.51785 -33.83354 -33.20654 -32.24867 -29.50455 -28.94384 -27.31107 -26.49666 -25.95228 -24.00619 -23.18990 -22.70329 -21.49724 -20.95410 -20.60679 -19.84744 -18.51632 -18.06891 -17.74364 -16.96527 -16.71979 -16.53686 -16.37561 -16.25206 -16.02264 -15.71062 -15.65743 -15.23473 -14.99394 -14.89074 -14.83811 -14.53652 -14.12290 -13.92876 -13.65122 -13.49961 -13.44445 -13.30956 -13.04766 -12.95937 -12.86672 -12.64118 -12.63014 -12.42170 -12.28567 -12.12525 -12.03137 -11.73930 -11.61016 -11.57135 -11.32395 -11.24936 -11.12145 -10.38122 -10.21348 -10.11706 -9.98253 -9.17382 -8.45062 -5.93705 1.40330 1.41967 1.52917 1.54469 1.88659 2.07216 2.29375 2.76364 3.01774 3.21725 3.40318 3.63006 3.77117 3.81784 3.85457 3.91211 3.96368 4.21906 4.30237 4.33680 4.39320 4.42368 4.43985 4.50565 4.51778 4.52811 4.56886 4.59684 4.66420 4.73718 4.81281 4.82249 4.85941 4.96044 5.06111 5.08328 5.10516 5.17106 5.20504 5.30338 5.38796 5.39372 5.42045 5.52848 5.91970 6.07128 6.11760 6.27684 6.54351 6.62298 7.14377 7.21272 7.58282 8.14035 8.72088 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030819 B = 0.001682 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.322057 B =16644.829555 C =17076.854104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C 0.074 3.926 4 H 0.116 0.884 5 O -0.392 6.392 6 C 0.019 3.981 7 C 0.503 3.497 8 O -0.576 6.576 9 N -0.709 5.709 10 C 0.134 3.866 11 C -0.082 4.082 12 H 0.088 0.912 13 C -0.107 4.107 14 C -0.106 4.106 15 C 0.050 3.950 16 N -0.529 5.529 17 C 0.057 3.943 18 C 0.442 3.558 19 O -0.612 6.612 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.272 1.272 29 C 0.061 3.939 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.416 0.584 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.027 0.973 47 H 0.109 0.891 48 H 0.063 0.937 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.083 0.917 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.813 1.051 15.528 29.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.013 3.987 4 H 0.134 0.866 5 O -0.310 6.310 6 C -0.077 4.077 7 C 0.290 3.710 8 O -0.455 6.455 9 N -0.363 5.363 10 C 0.010 3.990 11 C -0.101 4.101 12 H 0.106 0.894 13 C -0.145 4.145 14 C -0.144 4.144 15 C -0.078 4.078 16 N -0.254 5.254 17 C -0.074 4.074 18 C 0.230 3.770 19 O -0.497 6.497 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.067 4.067 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.254 0.746 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.077 0.923 46 H 0.045 0.955 47 H 0.127 0.873 48 H 0.081 0.919 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.102 0.898 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -24.874 1.331 15.480 29.328 hybrid contribution 1.320 -0.407 -0.501 1.469 sum -23.554 0.923 14.979 27.929 Atomic orbital electron populations 1.21827 0.93470 1.03166 1.02420 1.21948 0.98201 0.93227 1.03743 1.22202 0.89960 0.96906 0.89642 0.86606 1.87997 1.50580 1.61778 1.30627 1.23197 0.88056 0.92936 1.03534 1.21224 0.91323 0.76636 0.81834 1.90706 1.65866 1.47743 1.41183 1.45827 1.07864 1.64464 1.18189 1.21207 0.80036 1.01075 0.96706 1.21263 0.95319 0.97499 0.96044 0.89367 1.21637 1.02062 0.94185 0.96593 1.21484 0.93475 1.01281 0.98168 1.22201 0.97789 0.87380 1.00422 1.61441 1.15925 1.16888 1.31129 1.21714 0.90035 1.03148 0.92548 1.20739 0.82503 0.83078 0.90717 1.90454 1.46188 1.51928 1.61176 1.41945 1.08715 1.58779 1.11877 1.19626 0.95118 1.42817 0.88625 0.90227 1.26037 0.94624 0.96708 1.03976 1.69673 1.02066 1.46459 1.38044 0.84988 0.77422 0.78771 0.77148 1.19732 1.19604 1.19690 1.22100 0.95679 1.00471 0.88470 0.91244 0.92702 0.91063 0.92193 0.88421 0.91539 0.88991 0.92992 0.74613 0.91939 0.91951 0.91829 0.89341 0.92068 0.90518 0.92312 0.95471 0.87342 0.91929 0.77131 0.91377 0.89845 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.95 71.98 0.64 -0.34 16 2 C -0.13 -1.28 5.61 30.59 0.17 -1.11 16 3 C 0.07 1.01 2.67 29.85 0.08 1.09 16 4 H 0.12 0.88 7.60 -2.39 -0.02 0.87 16 5 O -0.39 -7.35 9.65 -129.99 -1.25 -8.60 16 6 C 0.02 0.19 10.48 113.37 1.19 1.38 16 7 C 0.50 10.05 7.18 87.66 0.63 10.68 16 8 O -0.58 -17.82 16.51 15.96 0.26 -17.55 16 9 N -0.71 -10.08 5.20 -463.06 -2.41 -12.49 16 10 C 0.13 2.30 5.07 86.38 0.44 2.74 16 11 C -0.08 -1.44 2.39 -10.74 -0.03 -1.47 16 12 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 13 C -0.11 -1.74 5.13 30.67 0.16 -1.59 16 14 C -0.11 -2.43 6.09 30.64 0.19 -2.25 16 15 C 0.05 1.55 5.10 86.33 0.44 1.99 16 16 N -0.53 -16.54 4.40 -900.93 -3.96 -20.50 16 17 C 0.06 1.98 5.45 85.56 0.47 2.44 16 18 C 0.44 21.01 7.46 87.66 0.65 21.67 16 19 O -0.61 -33.30 13.90 -3.06 -0.04 -33.34 16 20 N -0.58 -29.65 5.29 -306.98 -1.62 -31.28 16 21 C -0.33 -18.88 9.68 84.04 0.81 -18.06 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 24 N -0.92 -49.97 13.05 21.66 0.28 -49.68 16 25 Si 0.99 42.97 29.55 68.60 2.03 44.99 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 C 0.06 1.38 4.74 86.33 0.41 1.79 16 30 H 0.07 0.37 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.44 6.60 -2.39 -0.02 0.43 16 32 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.10 0.53 7.76 -2.38 -0.02 0.51 16 35 H 0.07 0.42 6.12 -2.39 -0.01 0.40 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.44 8.00 -2.39 -0.02 0.42 16 38 H 0.42 3.30 7.38 -92.71 -0.68 2.61 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 0.96 7.26 -2.39 -0.02 0.94 16 43 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.06 2.37 5.78 -2.39 -0.01 2.35 16 46 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.11 3.34 7.99 -2.39 -0.02 3.32 16 48 H 0.06 1.99 8.12 -2.39 -0.02 1.97 16 49 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 50 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 51 H 0.08 1.78 8.02 -2.39 -0.02 1.76 16 52 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -77.14 412.07 -0.49 -77.64 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -0.49 Total: 32.12 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 6.72 Total: 18.69 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -7.71 Total: -113.95 kcal Atomic # 8 Polarization: -58.46 SS G_CDS: -1.03 Total: -59.49 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -77.14 -0.49 -77.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713211339.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.775 kcal (2) G-P(sol) polarization free energy of solvation -77.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds