Wall clock time and date at job start Wed Apr 1 2020 00:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08998 * 110.43886 * 52.45282 * 3 2 1 5 5 C 1.54813 * 110.48764 * 289.76441 * 3 2 1 6 6 C 1.54992 * 102.09101 * 220.44309 * 5 3 2 7 7 O 1.44378 * 103.49214 * 37.02450 * 6 5 3 8 8 C 1.43747 * 106.97476 * 319.93921 * 7 6 5 9 9 H 1.09007 * 109.99843 * 267.01873 * 8 7 6 10 10 C 1.50694 * 109.88082 * 145.93716 * 8 7 6 11 11 O 1.21284 * 119.99934 * 357.17064 * 10 8 7 12 12 N 1.34778 * 120.00066 * 177.16648 * 10 8 7 13 13 C 1.46500 * 119.99618 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.46578 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47136 * 179.97438 * 14 13 12 16 16 H 1.09004 * 109.47253 * 305.00705 * 15 14 13 17 17 C 1.52992 * 109.47273 * 184.99958 * 15 14 13 18 18 N 1.46904 * 109.46768 * 64.99984 * 15 14 13 19 19 C 1.46900 * 110.99915 * 204.99738 * 18 15 14 20 20 C 1.50703 * 109.46995 * 180.02562 * 19 18 15 21 21 O 1.21287 * 120.00146 * 0.02562 * 20 19 18 22 22 N 1.34774 * 119.99793 * 180.02562 * 20 19 18 23 23 C 1.37102 * 119.99724 * 180.02562 * 22 20 19 24 24 H 1.07996 * 120.00226 * 359.97438 * 23 22 20 25 25 C 1.38948 * 119.99708 * 180.02562 * 23 22 20 26 26 N 1.31417 * 120.00378 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99911 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.46942 * 60.00141 * 27 25 23 29 29 H 1.48495 * 109.47136 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47097 * 300.00016 * 27 25 23 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 33 33 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 34 34 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 35 35 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 36 36 H 1.08998 * 110.90641 * 338.64027 * 5 3 2 37 37 H 1.09005 * 110.90802 * 102.24577 * 5 3 2 38 38 H 1.08995 * 110.61920 * 278.51856 * 6 5 3 39 39 H 1.09003 * 110.61961 * 155.52438 * 6 5 3 40 40 H 0.96998 * 120.00005 * 359.97438 * 12 10 8 41 41 H 1.08996 * 109.47272 * 299.99743 * 13 12 10 42 42 H 1.08994 * 109.47257 * 60.00437 * 13 12 10 43 43 H 1.08996 * 109.47209 * 299.99904 * 14 13 12 44 44 H 1.09004 * 109.46859 * 60.00309 * 14 13 12 45 45 H 1.09001 * 109.47302 * 180.02562 * 17 15 14 46 46 H 1.08995 * 109.47729 * 300.00305 * 17 15 14 47 47 H 1.09010 * 109.47349 * 60.00692 * 17 15 14 48 48 H 1.00895 * 111.00360 * 328.95894 * 18 15 14 49 49 H 1.08997 * 109.47623 * 300.00590 * 19 18 15 50 50 H 1.08996 * 109.46956 * 60.00675 * 19 18 15 51 51 H 0.97002 * 120.00623 * 359.97438 * 22 20 19 52 52 H 0.96999 * 120.00383 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5801 2.0088 0.8098 5 6 1.7583 2.1168 -1.3648 6 6 3.0604 2.9230 -1.6035 7 8 4.0921 2.0592 -1.0800 8 6 3.5756 1.4716 0.1259 9 1 3.8656 2.0731 0.9875 10 6 4.1039 0.0687 0.2794 11 8 4.8095 -0.4113 -0.5824 12 7 3.7923 -0.6527 1.3744 13 6 4.3063 -2.0164 1.5238 14 6 3.8085 -2.6072 2.8444 15 6 4.3447 -4.0316 3.0003 16 1 4.0663 -4.6222 2.1274 17 6 3.7476 -4.6667 4.2575 18 7 5.8085 -3.9934 3.1189 19 6 6.4052 -5.2635 2.6844 20 6 7.9041 -5.1869 2.8206 21 8 8.4241 -4.1742 3.2389 22 7 8.6667 -6.2438 2.4776 23 6 10.0303 -6.1743 2.6020 24 1 10.4933 -5.2726 2.9745 25 6 10.8167 -7.2638 2.2478 26 7 10.2533 -8.3610 1.7941 27 14 12.6746 -7.1689 2.4167 28 1 13.0303 -6.9160 3.8361 29 1 13.2778 -8.4526 1.9769 30 1 13.1926 -6.0629 1.5719 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 1.6147 1.3698 -2.1454 37 1 0.8962 2.7806 -1.3001 38 1 3.0343 3.8652 -1.0562 39 1 3.2122 3.1005 -2.6682 40 1 3.2283 -0.2687 2.0638 41 1 3.9540 -2.6304 0.6949 42 1 5.3961 -1.9960 1.5233 43 1 4.1611 -1.9931 3.6730 44 1 2.7186 -2.6276 2.8453 45 1 4.1300 -5.6813 4.3688 46 1 4.0260 -4.0762 5.1303 47 1 2.6614 -4.6951 4.1695 48 1 6.1931 -3.2174 2.6014 49 1 6.0252 -6.0748 3.3053 50 1 6.1438 -5.4502 1.6428 51 1 8.2509 -7.0540 2.1433 52 1 10.8022 -9.1217 1.5472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713410951.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:31 Heat of formation + Delta-G solvation = -122.515269 kcal Electronic energy + Delta-G solvation = -30125.445972 eV Core-core repulsion = 25931.745141 eV Total energy + Delta-G solvation = -4193.700830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.04550 -38.89497 -38.34422 -37.10182 -35.55359 -34.49421 -33.84188 -31.68198 -31.10531 -30.77892 -30.12668 -28.55242 -26.37782 -24.62149 -24.01001 -23.52841 -22.68896 -21.54714 -20.68402 -19.94858 -19.19688 -17.85497 -17.44625 -17.17745 -16.69093 -16.21662 -15.86885 -15.56170 -15.33527 -15.10729 -14.91621 -14.69464 -14.43247 -14.01577 -13.85330 -13.70067 -13.60989 -13.56052 -13.11915 -12.96658 -12.55964 -12.48787 -12.16441 -12.07419 -11.85667 -11.77647 -11.65831 -11.60792 -11.52787 -11.29423 -11.24070 -11.14836 -11.08693 -11.00613 -10.75956 -10.40451 -10.40046 -10.16808 -9.68921 -9.45435 -9.16797 -8.40250 -8.04082 -7.91227 -6.37066 -3.77735 2.40286 2.65331 3.24163 3.29195 3.34063 3.60358 3.89327 3.95850 4.12218 4.12975 4.26499 4.34987 4.51514 4.61806 4.69552 4.71859 4.83719 4.89399 4.91037 4.95296 4.97115 5.14259 5.15499 5.26500 5.29455 5.33534 5.36950 5.39069 5.41754 5.55095 5.55631 5.61064 5.69329 5.70708 5.81308 5.83651 5.85601 5.90588 6.02608 6.06743 6.16522 6.27842 6.37364 6.37589 7.21791 7.26937 7.59588 7.69125 8.01988 8.10935 8.66168 9.22501 9.59163 10.10827 10.80663 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014975 B = 0.002007 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.277912 B =13945.697064 C =15241.355772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C -0.113 4.113 4 H 0.094 0.906 5 C -0.149 4.149 6 C 0.043 3.957 7 O -0.345 6.345 8 C 0.061 3.939 9 H 0.095 0.905 10 C 0.516 3.484 11 O -0.513 6.513 12 N -0.727 5.727 13 C 0.112 3.888 14 C -0.132 4.132 15 C 0.086 3.914 16 H 0.045 0.955 17 C -0.139 4.139 18 N -0.666 5.666 19 C 0.050 3.950 20 C 0.441 3.559 21 O -0.583 6.583 22 N -0.564 5.564 23 C -0.299 4.299 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.903 5.903 27 Si 0.931 3.069 28 H -0.274 1.274 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.400 0.600 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.349 0.651 49 H 0.086 0.914 50 H 0.044 0.956 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.551 17.884 -2.307 31.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.132 4.132 4 H 0.112 0.888 5 C -0.186 4.186 6 C -0.034 4.034 7 O -0.263 6.263 8 C 0.000 4.000 9 H 0.112 0.888 10 C 0.301 3.699 11 O -0.386 6.386 12 N -0.383 5.383 13 C -0.011 4.011 14 C -0.170 4.170 15 C -0.025 4.025 16 H 0.063 0.937 17 C -0.197 4.197 18 N -0.301 5.301 19 C -0.083 4.083 20 C 0.226 3.774 21 O -0.467 6.467 22 N -0.201 5.201 23 C -0.428 4.428 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.544 5.544 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.236 0.764 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.171 0.829 49 H 0.104 0.896 50 H 0.062 0.938 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.345 17.822 -2.175 30.250 hybrid contribution 0.132 -0.295 -0.690 0.762 sum -24.212 17.527 -2.866 30.028 Atomic orbital electron populations 1.21756 0.95135 1.01964 1.01780 1.22109 0.96688 0.94839 1.04043 1.22584 0.93059 0.98337 0.99183 0.88790 1.23244 0.98616 0.99921 0.96842 1.23650 0.86213 0.93200 1.00312 1.89045 1.37589 1.61039 1.38622 1.22738 0.93706 0.92705 0.90868 0.88774 1.20315 0.80487 0.87143 0.81986 1.90772 1.35853 1.71284 1.40735 1.46118 1.53541 1.16011 1.22608 1.21493 0.99959 0.81729 0.97918 1.21982 1.01063 0.96993 0.96944 1.21452 0.88791 0.94478 0.97744 0.93739 1.21782 0.98894 1.01257 0.97743 1.60205 1.02591 1.04928 1.62391 1.21722 0.94788 0.93117 0.98648 1.19817 0.87720 0.85204 0.84630 1.90520 1.74160 1.31506 1.50531 1.41856 1.06972 1.14054 1.57186 1.19654 0.81202 1.01170 1.40801 0.87992 1.25262 1.00720 0.94977 0.97033 1.69606 1.36673 1.04046 1.44077 0.85914 0.82091 0.77321 0.78870 1.19908 1.21005 1.19905 0.92453 0.92616 0.92737 0.89760 0.91354 0.90019 0.89787 0.91790 0.88469 0.76402 0.91349 0.90831 0.90000 0.90644 0.92396 0.91857 0.92910 0.82916 0.89593 0.93844 0.77470 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.79 37.16 0.36 -0.37 16 2 C -0.14 -0.89 4.15 -26.73 -0.11 -1.00 16 3 C -0.11 -0.67 3.04 -89.09 -0.27 -0.94 16 4 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 5 C -0.15 -0.84 6.03 -24.72 -0.15 -0.99 16 6 C 0.04 0.30 7.72 38.21 0.29 0.60 16 7 O -0.35 -4.05 10.74 -54.81 -0.59 -4.63 16 8 C 0.06 0.56 3.84 -27.31 -0.10 0.45 16 9 H 0.09 0.66 8.14 -51.92 -0.42 0.23 16 10 C 0.52 6.20 5.69 -10.99 -0.06 6.14 16 11 O -0.51 -8.98 16.53 -14.02 -0.23 -9.21 16 12 N -0.73 -6.50 3.74 -60.30 -0.23 -6.72 16 13 C 0.11 1.20 5.50 -4.04 -0.02 1.18 16 14 C -0.13 -1.16 4.92 -26.73 -0.13 -1.30 16 15 C 0.09 0.99 2.65 -67.71 -0.18 0.82 16 16 H 0.04 0.51 7.80 -51.93 -0.40 0.10 16 17 C -0.14 -1.47 9.41 37.15 0.35 -1.12 16 18 N -0.67 -10.74 5.93 -107.99 -0.64 -11.38 16 19 C 0.05 0.90 5.97 -4.97 -0.03 0.87 16 20 C 0.44 10.75 7.82 -10.99 -0.09 10.66 16 21 O -0.58 -16.31 15.78 5.55 0.09 -16.23 16 22 N -0.56 -14.73 5.29 -10.96 -0.06 -14.79 16 23 C -0.30 -8.56 9.68 -14.93 -0.14 -8.71 16 24 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -25.08 13.05 55.50 0.72 -24.36 16 27 Si 0.93 21.61 29.55 -169.99 -5.02 16.59 16 28 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 30 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.05 0.26 7.63 -51.93 -0.40 -0.14 16 34 H 0.08 0.51 4.80 -51.93 -0.25 0.26 16 35 H 0.07 0.62 7.70 -51.93 -0.40 0.22 16 36 H 0.08 0.54 7.77 -51.93 -0.40 0.14 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.40 2.23 7.52 -40.82 -0.31 1.92 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.00 6.42 -51.93 -0.33 0.67 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.05 0.44 8.14 -51.92 -0.42 0.01 16 48 H 0.35 5.99 6.17 -39.29 -0.24 5.75 16 49 H 0.09 1.43 7.43 -51.93 -0.39 1.05 16 50 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 51 H 0.39 9.77 7.90 -40.82 -0.32 9.44 16 52 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 413.46 15.07 6.23 6.23 Total: -1.00 -36.30 413.46 -8.94 -45.24 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -8.83 Total: 12.48 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -0.38 Total: 6.78 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.20 Total: -57.25 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.73 Total: -30.07 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.30 -8.94 -45.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713410951.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.280 kcal (2) G-P(sol) polarization free energy of solvation -36.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds