Wall clock time and date at job start Wed Apr 1 2020 00:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08998 * 110.43886 * 52.45282 * 3 2 1 5 5 C 1.54813 * 110.48764 * 289.76441 * 3 2 1 6 6 C 1.54992 * 102.09101 * 220.44309 * 5 3 2 7 7 O 1.44378 * 103.49214 * 37.02450 * 6 5 3 8 8 C 1.43747 * 106.97476 * 319.93921 * 7 6 5 9 9 H 1.09007 * 109.99843 * 267.01873 * 8 7 6 10 10 C 1.50694 * 109.88082 * 145.93716 * 8 7 6 11 11 O 1.21284 * 119.99934 * 357.17064 * 10 8 7 12 12 N 1.34778 * 120.00066 * 177.16648 * 10 8 7 13 13 C 1.46500 * 119.99618 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.46578 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47136 * 179.97438 * 14 13 12 16 16 H 1.09004 * 109.47253 * 305.00705 * 15 14 13 17 17 C 1.52992 * 109.47273 * 184.99958 * 15 14 13 18 18 N 1.46904 * 109.46768 * 64.99984 * 15 14 13 19 19 C 1.46900 * 110.99915 * 204.99738 * 18 15 14 20 20 C 1.50703 * 109.46995 * 180.02562 * 19 18 15 21 21 O 1.21287 * 120.00146 * 0.02562 * 20 19 18 22 22 N 1.34774 * 119.99793 * 180.02562 * 20 19 18 23 23 C 1.37102 * 119.99724 * 180.02562 * 22 20 19 24 24 H 1.07996 * 120.00226 * 359.97438 * 23 22 20 25 25 C 1.38948 * 119.99708 * 180.02562 * 23 22 20 26 26 N 1.31417 * 120.00378 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99911 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.46942 * 60.00141 * 27 25 23 29 29 H 1.48495 * 109.47136 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47097 * 300.00016 * 27 25 23 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 33 33 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 34 34 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 35 35 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 36 36 H 1.08998 * 110.90641 * 338.64027 * 5 3 2 37 37 H 1.09005 * 110.90802 * 102.24577 * 5 3 2 38 38 H 1.08995 * 110.61920 * 278.51856 * 6 5 3 39 39 H 1.09003 * 110.61961 * 155.52438 * 6 5 3 40 40 H 0.96998 * 120.00005 * 359.97438 * 12 10 8 41 41 H 1.08996 * 109.47272 * 299.99743 * 13 12 10 42 42 H 1.08994 * 109.47257 * 60.00437 * 13 12 10 43 43 H 1.08996 * 109.47209 * 299.99904 * 14 13 12 44 44 H 1.09004 * 109.46859 * 60.00309 * 14 13 12 45 45 H 1.09001 * 109.47302 * 180.02562 * 17 15 14 46 46 H 1.08995 * 109.47729 * 300.00305 * 17 15 14 47 47 H 1.09010 * 109.47349 * 60.00692 * 17 15 14 48 48 H 1.00895 * 111.00360 * 328.95894 * 18 15 14 49 49 H 1.08997 * 109.47623 * 300.00590 * 19 18 15 50 50 H 1.08996 * 109.46956 * 60.00675 * 19 18 15 51 51 H 0.97002 * 120.00623 * 359.97438 * 22 20 19 52 52 H 0.96999 * 120.00383 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5801 2.0088 0.8098 5 6 1.7583 2.1168 -1.3648 6 6 3.0604 2.9230 -1.6035 7 8 4.0921 2.0592 -1.0800 8 6 3.5756 1.4716 0.1259 9 1 3.8656 2.0731 0.9875 10 6 4.1039 0.0687 0.2794 11 8 4.8095 -0.4113 -0.5824 12 7 3.7923 -0.6527 1.3744 13 6 4.3063 -2.0164 1.5238 14 6 3.8085 -2.6072 2.8444 15 6 4.3447 -4.0316 3.0003 16 1 4.0663 -4.6222 2.1274 17 6 3.7476 -4.6667 4.2575 18 7 5.8085 -3.9934 3.1189 19 6 6.4052 -5.2635 2.6844 20 6 7.9041 -5.1869 2.8206 21 8 8.4241 -4.1742 3.2389 22 7 8.6667 -6.2438 2.4776 23 6 10.0303 -6.1743 2.6020 24 1 10.4933 -5.2726 2.9745 25 6 10.8167 -7.2638 2.2478 26 7 10.2533 -8.3610 1.7941 27 14 12.6746 -7.1689 2.4167 28 1 13.0303 -6.9160 3.8361 29 1 13.2778 -8.4526 1.9769 30 1 13.1926 -6.0629 1.5719 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 1.6147 1.3698 -2.1454 37 1 0.8962 2.7806 -1.3001 38 1 3.0343 3.8652 -1.0562 39 1 3.2122 3.1005 -2.6682 40 1 3.2283 -0.2687 2.0638 41 1 3.9540 -2.6304 0.6949 42 1 5.3961 -1.9960 1.5233 43 1 4.1611 -1.9931 3.6730 44 1 2.7186 -2.6276 2.8453 45 1 4.1300 -5.6813 4.3688 46 1 4.0260 -4.0762 5.1303 47 1 2.6614 -4.6951 4.1695 48 1 6.1931 -3.2174 2.6014 49 1 6.0252 -6.0748 3.3053 50 1 6.1438 -5.4502 1.6428 51 1 8.2509 -7.0540 2.1433 52 1 10.8022 -9.1217 1.5472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713410951.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:30 Heat of formation + Delta-G solvation = -150.201427 kcal Electronic energy + Delta-G solvation = -30126.646533 eV Core-core repulsion = 25931.745141 eV Total energy + Delta-G solvation = -4194.901392 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.80372 -40.27705 -39.57931 -38.33272 -36.38804 -35.96182 -35.25407 -33.34888 -32.67464 -31.36704 -30.85423 -29.29696 -28.07523 -25.92773 -25.08283 -24.24725 -23.35477 -22.28440 -21.52400 -21.17161 -20.69877 -19.93740 -18.24000 -17.89748 -17.78614 -17.42654 -16.91717 -16.88545 -16.44497 -16.26535 -15.92744 -15.78926 -15.61061 -15.41619 -15.19627 -14.64747 -14.60307 -14.30967 -14.24657 -14.07017 -13.54250 -13.51000 -13.36112 -13.16486 -13.07306 -12.88090 -12.60202 -12.58875 -12.46179 -12.32544 -12.21636 -12.16609 -12.12331 -12.06400 -11.76952 -11.63044 -11.56476 -11.52394 -11.12515 -10.53257 -10.36842 -10.05802 -10.04097 -9.33669 -8.48511 -5.97634 1.38115 1.39502 1.49830 1.50955 1.87568 2.02599 2.27667 2.92132 2.99568 3.18206 3.35798 3.49412 3.57460 3.69496 3.79388 3.94996 3.99338 4.09667 4.21394 4.25364 4.28599 4.40301 4.42840 4.46017 4.48105 4.53151 4.53672 4.60145 4.67423 4.73109 4.80816 4.86739 4.96736 4.97927 5.01250 5.04787 5.12345 5.18745 5.20288 5.25810 5.33039 5.38390 5.43144 5.48527 5.78686 5.89861 6.12124 6.39257 6.47480 6.57766 7.10029 7.17595 7.53361 8.08874 8.68706 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014975 B = 0.002007 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.277912 B =13945.697064 C =15241.355772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C -0.104 4.104 4 H 0.132 0.868 5 C -0.144 4.144 6 C 0.035 3.965 7 O -0.391 6.391 8 C 0.058 3.942 9 H 0.120 0.880 10 C 0.509 3.491 11 O -0.581 6.581 12 N -0.706 5.706 13 C 0.116 3.884 14 C -0.116 4.116 15 C 0.082 3.918 16 H 0.051 0.949 17 C -0.135 4.135 18 N -0.680 5.680 19 C 0.065 3.935 20 C 0.435 3.565 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.336 4.336 24 H 0.078 0.922 25 C -0.014 4.014 26 N -0.920 5.920 27 Si 0.994 3.006 28 H -0.270 1.270 29 H -0.268 1.268 30 H -0.273 1.273 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.421 0.579 41 H 0.058 0.942 42 H 0.038 0.962 43 H 0.085 0.915 44 H 0.113 0.887 45 H 0.045 0.955 46 H 0.056 0.944 47 H 0.084 0.916 48 H 0.340 0.660 49 H 0.106 0.894 50 H 0.060 0.940 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.257 18.759 -1.081 33.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C -0.123 4.123 4 H 0.150 0.850 5 C -0.182 4.182 6 C -0.041 4.041 7 O -0.310 6.310 8 C -0.003 4.003 9 H 0.138 0.862 10 C 0.297 3.703 11 O -0.460 6.460 12 N -0.362 5.362 13 C -0.008 4.008 14 C -0.154 4.154 15 C -0.028 4.028 16 H 0.069 0.931 17 C -0.193 4.193 18 N -0.314 5.314 19 C -0.068 4.068 20 C 0.223 3.777 21 O -0.511 6.511 22 N -0.210 5.210 23 C -0.465 4.465 24 H 0.096 0.904 25 C -0.214 4.214 26 N -0.560 5.560 27 Si 0.818 3.182 28 H -0.195 1.195 29 H -0.193 1.193 30 H -0.199 1.199 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.260 0.740 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.103 0.897 44 H 0.131 0.869 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.103 0.897 48 H 0.160 0.840 49 H 0.124 0.876 50 H 0.078 0.922 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -27.126 18.689 -0.910 32.953 hybrid contribution 0.930 -0.548 -1.084 1.530 sum -26.196 18.141 -1.994 31.926 Atomic orbital electron populations 1.21726 0.93539 1.02088 1.02818 1.22065 0.97985 0.94991 1.02440 1.22665 0.90621 0.98407 1.00560 0.85015 1.23245 0.98960 0.99781 0.96189 1.23904 0.85887 0.93688 1.00618 1.89002 1.39995 1.62119 1.39908 1.22983 0.95713 0.90561 0.91009 0.86249 1.21085 0.79353 0.88432 0.81472 1.90734 1.39074 1.72931 1.43214 1.45935 1.52767 1.15184 1.22317 1.21343 0.97944 0.82627 0.98899 1.21895 1.03045 0.94997 0.95425 1.21652 0.85878 0.96546 0.98724 0.93127 1.21772 1.00767 1.00128 0.96619 1.60267 1.05376 1.03491 1.62310 1.21577 0.90059 0.94980 1.00172 1.20932 0.90295 0.83878 0.82603 1.90482 1.75756 1.32882 1.51936 1.41936 1.06536 1.14788 1.57767 1.19632 0.82797 1.01147 1.42971 0.90427 1.26073 1.05045 0.94257 0.95994 1.69667 1.38299 1.04373 1.43708 0.84975 0.76571 0.77841 0.78857 1.19545 1.19264 1.19882 0.92877 0.90620 0.92587 0.89400 0.94922 0.91775 0.86733 0.89457 0.88587 0.73958 0.92355 0.94408 0.89662 0.86853 0.93633 0.92469 0.89718 0.83989 0.87625 0.92205 0.76973 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.79 71.98 0.70 -0.33 16 2 C -0.14 -1.54 4.15 30.60 0.13 -1.41 16 3 C -0.10 -0.97 3.04 -9.80 -0.03 -1.00 16 4 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 5 C -0.14 -1.37 6.03 31.89 0.19 -1.18 16 6 C 0.03 0.46 7.72 72.66 0.56 1.02 16 7 O -0.39 -9.34 10.74 -130.26 -1.40 -10.74 16 8 C 0.06 1.00 3.84 30.22 0.12 1.12 16 9 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 10 C 0.51 12.57 5.69 87.65 0.50 13.07 16 11 O -0.58 -21.89 16.53 15.68 0.26 -21.63 16 12 N -0.71 -12.13 3.74 -463.06 -1.73 -13.86 16 13 C 0.12 2.48 5.50 86.38 0.48 2.96 16 14 C -0.12 -1.79 4.92 30.60 0.15 -1.64 16 15 C 0.08 1.75 2.65 44.91 0.12 1.86 16 16 H 0.05 1.05 7.80 -2.38 -0.02 1.03 16 17 C -0.14 -2.51 9.41 71.98 0.68 -1.83 16 18 N -0.68 -21.87 5.93 -495.58 -2.94 -24.81 16 19 C 0.06 2.34 5.97 85.56 0.51 2.85 16 20 C 0.44 21.86 7.82 87.66 0.69 22.55 16 21 O -0.62 -36.34 15.78 -3.05 -0.05 -36.39 16 22 N -0.57 -30.82 5.29 -306.99 -1.62 -32.44 16 23 C -0.34 -19.87 9.68 84.04 0.81 -19.05 16 24 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 25 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 26 N -0.92 -51.10 13.05 21.66 0.28 -50.82 16 27 Si 0.99 44.45 29.55 68.60 2.03 46.47 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 29 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 30 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.06 0.39 7.63 -2.39 -0.02 0.38 16 34 H 0.09 0.86 4.80 -2.39 -0.01 0.85 16 35 H 0.03 0.60 7.70 -2.39 -0.02 0.58 16 36 H 0.06 0.83 7.77 -2.39 -0.02 0.82 16 37 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.42 3.62 7.52 -92.71 -0.70 2.92 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.04 1.10 6.42 -2.39 -0.02 1.08 16 43 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.04 0.96 7.45 -2.39 -0.02 0.94 16 46 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 48 H 0.34 12.05 6.17 -89.70 -0.55 11.50 16 49 H 0.11 3.42 7.43 -2.39 -0.02 3.41 16 50 H 0.06 1.98 8.05 -2.39 -0.02 1.96 16 51 H 0.40 20.19 7.90 -92.71 -0.73 19.46 16 52 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -84.68 413.46 -0.15 -84.83 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -1.04 Total: 40.70 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 6.07 Total: 18.69 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -6.01 Total: -121.94 kcal Atomic # 8 Polarization: -67.57 SS G_CDS: -1.19 Total: -68.76 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -84.68 -0.15 -84.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713410951.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.371 kcal (2) G-P(sol) polarization free energy of solvation -84.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds