Wall clock time and date at job start Wed Apr 1 2020 00:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 H 1.08997 * 109.47198 * 305.61082 * 3 2 1 5 5 C 1.52998 * 109.47239 * 65.61336 * 3 2 1 6 6 N 1.46503 * 109.47355 * 174.99814 * 5 3 2 7 7 C 1.34773 * 119.99948 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00284 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99818 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.52306 * 59.87681 * 9 7 6 11 11 C 1.53180 * 109.52119 * 179.97438 * 9 7 6 12 12 C 1.53172 * 109.03431 * 62.99255 * 11 9 7 13 13 C 1.53094 * 109.16632 * 56.97924 * 12 11 9 14 14 O 1.42898 * 109.41279 * 302.39218 * 13 12 11 15 15 C 1.42903 * 114.10150 * 61.15751 * 14 13 12 16 16 N 1.46908 * 109.47075 * 185.61093 * 3 2 1 17 17 C 1.46902 * 110.99695 * 85.97026 * 16 3 2 18 18 C 1.50694 * 109.47252 * 174.53006 * 17 16 3 19 19 O 1.21299 * 119.99902 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00208 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00013 * 180.02562 * 20 18 17 22 22 H 1.08008 * 120.00035 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00154 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99872 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00115 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47155 * 59.99669 * 25 23 21 27 27 H 1.48506 * 109.47162 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47246 * 299.99564 * 25 23 21 29 29 H 1.09002 * 109.47021 * 183.34058 * 1 2 3 30 30 H 1.08998 * 109.47538 * 303.33813 * 1 2 3 31 31 H 1.09000 * 109.47420 * 63.33997 * 1 2 3 32 32 H 1.09000 * 109.47413 * 240.00266 * 2 1 3 33 33 H 1.09003 * 109.47140 * 119.99947 * 2 1 3 34 34 H 1.09008 * 109.47232 * 55.00062 * 5 3 2 35 35 H 1.08998 * 109.47419 * 294.99787 * 5 3 2 36 36 H 0.97004 * 119.99905 * 0.02562 * 6 5 3 37 37 H 1.08994 * 109.47522 * 180.12518 * 10 9 7 38 38 H 1.09007 * 109.46993 * 300.12722 * 10 9 7 39 39 H 1.09005 * 109.47349 * 60.12137 * 10 9 7 40 40 H 1.08995 * 109.54419 * 303.12236 * 11 9 7 41 41 H 1.09011 * 109.54274 * 182.85789 * 11 9 7 42 42 H 1.09001 * 109.52502 * 297.07298 * 12 11 9 43 43 H 1.09001 * 109.57124 * 176.91473 * 12 11 9 44 44 H 1.08996 * 109.47846 * 62.37251 * 13 12 11 45 45 H 1.08995 * 109.48055 * 182.40925 * 13 12 11 46 46 H 1.08993 * 109.48614 * 178.85929 * 15 14 13 47 47 H 1.08999 * 109.48641 * 58.82706 * 15 14 13 48 48 H 1.00897 * 110.99831 * 322.01987 * 16 3 2 49 49 H 1.08995 * 109.47424 * 294.53498 * 17 16 3 50 50 H 1.09005 * 109.47150 * 54.53640 * 17 16 3 51 51 H 0.96998 * 119.99948 * 0.02562 * 20 18 17 52 52 H 0.96997 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5968 1.9845 -0.8355 5 6 1.6484 2.1219 1.3138 6 7 2.2377 3.4621 1.3651 7 6 2.0264 4.2506 2.4375 8 8 1.3487 3.8504 3.3603 9 6 2.6331 5.6290 2.4906 10 6 2.1196 6.4594 1.3126 11 6 2.2417 6.3103 3.8055 12 6 2.8269 5.5127 4.9749 13 6 4.3447 5.4095 4.8034 14 8 4.6400 4.7951 3.5475 15 6 4.1584 5.5214 2.4149 16 7 3.5027 1.4447 -0.1354 17 6 3.9006 1.3938 -1.5486 18 6 5.3974 1.5329 -1.6544 19 8 6.0670 1.6613 -0.6512 20 7 5.9922 1.5135 -2.8636 21 6 7.3540 1.6395 -2.9598 22 1 7.9501 1.7547 -2.0665 23 6 7.9672 1.6201 -4.2065 24 7 7.2419 1.4805 -5.2934 25 14 9.8226 1.7925 -4.3376 26 1 10.4763 0.6824 -3.5989 27 1 10.2249 1.7404 -5.7661 28 1 10.2417 3.0912 -3.7519 29 1 -0.3633 -1.0259 0.0599 30 1 -0.3634 0.5648 0.8585 31 1 -0.3634 0.4611 -0.9184 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0166 1.5307 2.1524 35 1 0.5628 2.1999 1.3731 36 1 2.7801 3.7821 0.6272 37 1 2.5606 7.4554 1.3504 38 1 2.3982 5.9740 0.3771 39 1 1.0341 6.5401 1.3707 40 1 1.1556 6.3399 3.8916 41 1 2.6379 7.3257 3.8222 42 1 2.3930 4.5128 4.9873 43 1 2.6000 6.0199 5.9127 44 1 4.7823 6.4073 4.8317 45 1 4.7615 4.8065 5.6100 46 1 4.4410 4.9990 1.5010 47 1 4.5936 6.5207 2.4119 48 1 3.9151 0.6843 0.3840 49 1 3.5929 0.4407 -1.9786 50 1 3.4209 2.2087 -2.0908 51 1 5.4568 1.4105 -3.6659 52 1 7.6699 1.4673 -6.1637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714113350.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:47 Heat of formation + Delta-G solvation = -135.976906 kcal Electronic energy + Delta-G solvation = -31373.392957 eV Core-core repulsion = 27179.108386 eV Total energy + Delta-G solvation = -4194.284571 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.78268 -38.75577 -38.11110 -37.14217 -34.53332 -34.19101 -33.86536 -32.51471 -32.02573 -31.19982 -28.41393 -27.11054 -26.22546 -25.13644 -24.42899 -23.43285 -22.91023 -21.50744 -20.82290 -19.40012 -19.13689 -17.90439 -17.04531 -16.55472 -16.11453 -15.85522 -15.77594 -15.37627 -15.13548 -14.92233 -14.64492 -14.43566 -14.38052 -14.11639 -13.87043 -13.57812 -13.36366 -13.15394 -12.95026 -12.69353 -12.56288 -12.36159 -12.20432 -12.13606 -12.10872 -12.03379 -11.72354 -11.51125 -11.42993 -11.23304 -11.05544 -11.02463 -10.76302 -10.68614 -10.53609 -10.44908 -10.21911 -9.69779 -9.50278 -9.32617 -8.82564 -8.51159 -8.06613 -7.96564 -6.42623 -3.83346 2.75277 3.19548 3.25268 3.28320 3.29924 3.89230 3.90162 4.04429 4.28462 4.38123 4.53896 4.65910 4.72282 4.78824 4.90479 5.00956 5.05272 5.09026 5.13901 5.20653 5.28740 5.31114 5.31839 5.36202 5.44867 5.48350 5.58109 5.59994 5.65081 5.68358 5.74058 5.77786 5.80918 5.84871 5.86213 5.89250 5.93540 6.04053 6.05514 6.10876 6.26408 6.33465 6.63273 7.14030 7.16670 7.54340 7.57968 7.70826 8.05429 8.38647 8.60726 9.17501 9.53678 10.05511 10.75064 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010056 B = 0.003002 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.653332 B = 9324.456369 C =11258.440406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.152 4.152 3 C 0.072 3.928 4 H 0.083 0.917 5 C 0.135 3.865 6 N -0.707 5.707 7 C 0.533 3.467 8 O -0.548 6.548 9 C -0.118 4.118 10 C -0.140 4.140 11 C -0.093 4.093 12 C -0.166 4.166 13 C 0.057 3.943 14 O -0.370 6.370 15 C 0.073 3.927 16 N -0.661 5.661 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.578 6.578 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.407 0.593 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.059 0.941 48 H 0.353 0.647 49 H 0.044 0.956 50 H 0.084 0.916 51 H 0.391 0.609 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.533 6.850 11.478 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.192 4.192 3 C -0.038 4.038 4 H 0.101 0.899 5 C 0.010 3.990 6 N -0.358 5.358 7 C 0.319 3.681 8 O -0.427 6.427 9 C -0.121 4.121 10 C -0.197 4.197 11 C -0.131 4.131 12 C -0.203 4.203 13 C -0.019 4.019 14 O -0.288 6.288 15 C -0.004 4.004 16 N -0.293 5.293 17 C -0.083 4.083 18 C 0.225 3.775 19 O -0.462 6.462 20 N -0.202 5.202 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.243 0.757 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.109 0.891 46 H 0.122 0.878 47 H 0.078 0.922 48 H 0.173 0.827 49 H 0.062 0.938 50 H 0.102 0.898 51 H 0.224 0.776 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.320 7.140 12.619 20.378 hybrid contribution 0.505 -0.563 -1.327 1.528 sum -13.815 6.577 11.292 19.016 Atomic orbital electron populations 1.21783 0.95345 1.01797 1.02006 1.22224 0.96846 0.97322 1.02791 1.21922 0.89161 0.95142 0.97621 0.89899 1.21334 0.97141 0.83114 0.97366 1.45751 1.53007 1.15642 1.21405 1.20112 0.79920 0.86286 0.81772 1.90592 1.40341 1.75179 1.36556 1.21516 0.98191 0.93947 0.98454 1.21787 1.01701 0.99890 0.96360 1.21404 1.01658 0.97797 0.92244 1.22381 0.96312 1.03617 0.98026 1.22623 0.94969 0.97768 0.86583 1.88063 1.77775 1.49291 1.13638 1.22664 0.89685 0.97563 0.90526 1.60118 1.05785 1.53024 1.10330 1.21725 0.96095 1.00789 0.89696 1.19809 0.88521 0.84675 0.84473 1.90554 1.65180 1.54594 1.35851 1.41858 1.08005 1.63828 1.06463 1.19653 0.82238 1.46837 0.94140 0.87981 1.25244 1.00481 0.97351 0.94808 1.69599 1.36394 1.50277 0.98171 0.85934 0.82280 0.79137 0.76979 1.19921 1.21011 1.19870 0.92747 0.92287 0.92654 0.91355 0.91342 0.91678 0.91441 0.75657 0.91254 0.91559 0.91774 0.90930 0.91544 0.88573 0.91353 0.93566 0.89094 0.87793 0.92235 0.82737 0.93776 0.89755 0.77558 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.75 37.16 0.36 -0.91 16 2 C -0.15 -1.49 5.38 -26.73 -0.14 -1.64 16 3 C 0.07 0.80 2.21 -67.71 -0.15 0.65 16 4 H 0.08 0.87 7.70 -51.93 -0.40 0.47 16 5 C 0.14 1.61 5.02 -4.04 -0.02 1.59 16 6 N -0.71 -8.91 5.17 -60.29 -0.31 -9.23 16 7 C 0.53 7.24 5.92 -10.99 -0.06 7.17 16 8 O -0.55 -8.91 13.84 5.56 0.08 -8.83 16 9 C -0.12 -1.29 0.63 -155.52 -0.10 -1.39 16 10 C -0.14 -1.20 8.38 37.16 0.31 -0.89 16 11 C -0.09 -0.96 4.45 -26.55 -0.12 -1.08 16 12 C -0.17 -1.84 5.81 -26.59 -0.15 -2.00 16 13 C 0.06 0.65 6.84 37.21 0.25 0.91 16 14 O -0.37 -5.38 10.45 -35.23 -0.37 -5.75 16 15 C 0.07 0.88 5.47 37.20 0.20 1.09 16 16 N -0.66 -9.58 5.23 -107.99 -0.56 -10.14 16 17 C 0.05 0.80 5.99 -4.98 -0.03 0.77 16 18 C 0.44 9.90 7.83 -10.99 -0.09 9.81 16 19 O -0.58 -15.20 15.90 5.54 0.09 -15.12 16 20 N -0.56 -13.85 5.29 -10.96 -0.06 -13.90 16 21 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 22 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 25 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.49 6.55 -51.93 -0.34 0.15 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.70 7.50 -51.93 -0.39 0.31 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 35 H 0.07 0.76 6.76 -51.93 -0.35 0.41 16 36 H 0.41 5.05 6.97 -40.82 -0.28 4.77 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.55 7.56 -51.93 -0.39 0.16 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.77 8.02 -51.93 -0.42 0.36 16 41 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 42 H 0.10 1.35 5.82 -51.93 -0.30 1.05 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.10 1.35 7.53 -51.93 -0.39 0.96 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.35 5.53 8.37 -39.29 -0.33 5.20 16 49 H 0.04 0.65 7.54 -51.93 -0.39 0.26 16 50 H 0.08 1.22 7.92 -51.93 -0.41 0.80 16 51 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 52 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 409.80 15.07 6.18 6.18 Total: -1.00 -32.43 409.80 -8.12 -40.54 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: -8.88 Total: 17.66 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 0.03 Total: 6.24 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.21 Total: -56.74 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.20 Total: -29.70 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.43 -8.12 -40.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714113350.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.435 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds