Wall clock time and date at job start Wed Apr 1 2020 00:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 H 1.08997 * 109.47198 * 305.61082 * 3 2 1 5 5 C 1.52998 * 109.47239 * 65.61336 * 3 2 1 6 6 N 1.46503 * 109.47355 * 174.99814 * 5 3 2 7 7 C 1.34773 * 119.99948 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00284 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99818 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.52306 * 59.87681 * 9 7 6 11 11 C 1.53180 * 109.52119 * 179.97438 * 9 7 6 12 12 C 1.53172 * 109.03431 * 62.99255 * 11 9 7 13 13 C 1.53094 * 109.16632 * 56.97924 * 12 11 9 14 14 O 1.42898 * 109.41279 * 302.39218 * 13 12 11 15 15 C 1.42903 * 114.10150 * 61.15751 * 14 13 12 16 16 N 1.46908 * 109.47075 * 185.61093 * 3 2 1 17 17 C 1.46902 * 110.99695 * 85.97026 * 16 3 2 18 18 C 1.50694 * 109.47252 * 174.53006 * 17 16 3 19 19 O 1.21299 * 119.99902 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00208 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00013 * 180.02562 * 20 18 17 22 22 H 1.08008 * 120.00035 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00154 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99872 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00115 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47155 * 59.99669 * 25 23 21 27 27 H 1.48506 * 109.47162 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47246 * 299.99564 * 25 23 21 29 29 H 1.09002 * 109.47021 * 183.34058 * 1 2 3 30 30 H 1.08998 * 109.47538 * 303.33813 * 1 2 3 31 31 H 1.09000 * 109.47420 * 63.33997 * 1 2 3 32 32 H 1.09000 * 109.47413 * 240.00266 * 2 1 3 33 33 H 1.09003 * 109.47140 * 119.99947 * 2 1 3 34 34 H 1.09008 * 109.47232 * 55.00062 * 5 3 2 35 35 H 1.08998 * 109.47419 * 294.99787 * 5 3 2 36 36 H 0.97004 * 119.99905 * 0.02562 * 6 5 3 37 37 H 1.08994 * 109.47522 * 180.12518 * 10 9 7 38 38 H 1.09007 * 109.46993 * 300.12722 * 10 9 7 39 39 H 1.09005 * 109.47349 * 60.12137 * 10 9 7 40 40 H 1.08995 * 109.54419 * 303.12236 * 11 9 7 41 41 H 1.09011 * 109.54274 * 182.85789 * 11 9 7 42 42 H 1.09001 * 109.52502 * 297.07298 * 12 11 9 43 43 H 1.09001 * 109.57124 * 176.91473 * 12 11 9 44 44 H 1.08996 * 109.47846 * 62.37251 * 13 12 11 45 45 H 1.08995 * 109.48055 * 182.40925 * 13 12 11 46 46 H 1.08993 * 109.48614 * 178.85929 * 15 14 13 47 47 H 1.08999 * 109.48641 * 58.82706 * 15 14 13 48 48 H 1.00897 * 110.99831 * 322.01987 * 16 3 2 49 49 H 1.08995 * 109.47424 * 294.53498 * 17 16 3 50 50 H 1.09005 * 109.47150 * 54.53640 * 17 16 3 51 51 H 0.96998 * 119.99948 * 0.02562 * 20 18 17 52 52 H 0.96997 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5968 1.9845 -0.8355 5 6 1.6484 2.1219 1.3138 6 7 2.2377 3.4621 1.3651 7 6 2.0264 4.2506 2.4375 8 8 1.3487 3.8504 3.3603 9 6 2.6331 5.6290 2.4906 10 6 2.1196 6.4594 1.3126 11 6 2.2417 6.3103 3.8055 12 6 2.8269 5.5127 4.9749 13 6 4.3447 5.4095 4.8034 14 8 4.6400 4.7951 3.5475 15 6 4.1584 5.5214 2.4149 16 7 3.5027 1.4447 -0.1354 17 6 3.9006 1.3938 -1.5486 18 6 5.3974 1.5329 -1.6544 19 8 6.0670 1.6613 -0.6512 20 7 5.9922 1.5135 -2.8636 21 6 7.3540 1.6395 -2.9598 22 1 7.9501 1.7547 -2.0665 23 6 7.9672 1.6201 -4.2065 24 7 7.2419 1.4805 -5.2934 25 14 9.8226 1.7925 -4.3376 26 1 10.4763 0.6824 -3.5989 27 1 10.2249 1.7404 -5.7661 28 1 10.2417 3.0912 -3.7519 29 1 -0.3633 -1.0259 0.0599 30 1 -0.3634 0.5648 0.8585 31 1 -0.3634 0.4611 -0.9184 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0166 1.5307 2.1524 35 1 0.5628 2.1999 1.3731 36 1 2.7801 3.7821 0.6272 37 1 2.5606 7.4554 1.3504 38 1 2.3982 5.9740 0.3771 39 1 1.0341 6.5401 1.3707 40 1 1.1556 6.3399 3.8916 41 1 2.6379 7.3257 3.8222 42 1 2.3930 4.5128 4.9873 43 1 2.6000 6.0199 5.9127 44 1 4.7823 6.4073 4.8317 45 1 4.7615 4.8065 5.6100 46 1 4.4410 4.9990 1.5010 47 1 4.5936 6.5207 2.4119 48 1 3.9151 0.6843 0.3840 49 1 3.5929 0.4407 -1.9786 50 1 3.4209 2.2087 -2.0908 51 1 5.4568 1.4105 -3.6659 52 1 7.6699 1.4673 -6.1637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714113350.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:46 Heat of formation + Delta-G solvation = -160.682107 kcal Electronic energy + Delta-G solvation = -31374.464255 eV Core-core repulsion = 27179.108386 eV Total energy + Delta-G solvation = -4195.355869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.75230 -40.22057 -39.36422 -38.33422 -35.94937 -35.47812 -35.10834 -33.63466 -33.14576 -32.89636 -29.50794 -27.89851 -27.71095 -26.09427 -25.84807 -24.57725 -23.78086 -22.40613 -21.79736 -21.05477 -20.23339 -19.86198 -18.10740 -17.72093 -17.36069 -16.99431 -16.80032 -16.56948 -16.40776 -16.32022 -15.99295 -15.63097 -15.47994 -15.28452 -15.05210 -14.91862 -14.46741 -14.27493 -13.92549 -13.65821 -13.56514 -13.46955 -13.40546 -13.23622 -13.14882 -12.98257 -12.91279 -12.86444 -12.57757 -12.52622 -12.39898 -12.11729 -12.07429 -11.94105 -11.59945 -11.52953 -11.46461 -11.44644 -10.66274 -10.32781 -10.29445 -9.97310 -9.87776 -9.29507 -8.43952 -5.91867 1.41014 1.43009 1.53263 1.71477 2.11004 2.29829 2.33028 2.89711 2.98914 3.23869 3.52904 3.56097 3.67260 3.81464 3.83928 3.95237 4.03866 4.14047 4.21683 4.27081 4.35709 4.38408 4.47127 4.51276 4.52747 4.57947 4.62387 4.70132 4.71255 4.74475 4.76568 4.84392 4.87709 4.92346 4.96733 5.03407 5.14426 5.18422 5.21717 5.24647 5.37139 5.43584 5.44098 5.63170 5.91294 6.12315 6.25670 6.35545 6.64395 6.67640 7.16881 7.35195 7.61525 8.17763 8.73157 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010056 B = 0.003002 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.653332 B = 9324.456369 C =11258.440406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.083 3.917 4 H 0.099 0.901 5 C 0.138 3.862 6 N -0.705 5.705 7 C 0.525 3.475 8 O -0.580 6.580 9 C -0.113 4.113 10 C -0.136 4.136 11 C -0.092 4.092 12 C -0.163 4.163 13 C 0.053 3.947 14 O -0.406 6.406 15 C 0.071 3.929 16 N -0.672 5.672 17 C 0.066 3.934 18 C 0.439 3.561 19 O -0.620 6.620 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.921 5.921 25 Si 0.988 3.012 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.409 0.591 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.344 0.656 49 H 0.066 0.934 50 H 0.110 0.890 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.364 8.060 10.741 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C -0.027 4.027 4 H 0.117 0.883 5 C 0.013 3.987 6 N -0.355 5.355 7 C 0.312 3.688 8 O -0.461 6.461 9 C -0.116 4.116 10 C -0.193 4.193 11 C -0.130 4.130 12 C -0.201 4.201 13 C -0.023 4.023 14 O -0.325 6.325 15 C -0.006 4.006 16 N -0.303 5.303 17 C -0.066 4.066 18 C 0.227 3.773 19 O -0.506 6.506 20 N -0.212 5.212 21 C -0.461 4.461 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.562 5.562 25 Si 0.812 3.188 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.245 0.755 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.101 0.899 48 H 0.163 0.837 49 H 0.084 0.916 50 H 0.128 0.872 51 H 0.230 0.770 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.181 8.350 11.854 20.993 hybrid contribution 0.737 -0.969 -1.020 1.588 sum -14.444 7.381 10.834 19.506 Atomic orbital electron populations 1.21752 0.93967 1.02392 1.02424 1.22162 0.97957 0.96040 1.02549 1.21908 0.86977 0.96223 0.97592 0.88258 1.21334 0.97581 0.82708 0.97066 1.45807 1.52695 1.15755 1.21283 1.20684 0.79494 0.87357 0.81290 1.90578 1.41904 1.76063 1.37554 1.21526 0.97219 0.92778 1.00088 1.21798 1.01995 1.00426 0.95125 1.21445 1.01424 0.98824 0.91290 1.22314 0.95993 1.02136 0.99613 1.22782 0.95256 0.98798 0.85456 1.88005 1.78426 1.50930 1.15164 1.22737 0.90459 0.98163 0.89283 1.60070 1.07985 1.52954 1.09299 1.21569 0.91078 1.02863 0.91070 1.20924 0.91154 0.82165 0.83100 1.90528 1.67094 1.55858 1.37122 1.41913 1.07279 1.64613 1.07382 1.19599 0.83751 1.48954 0.93833 0.90498 1.25957 1.04462 0.96509 0.94166 1.69654 1.37847 1.50176 0.98484 0.85059 0.77343 0.78902 0.77480 1.19934 1.19570 1.19704 0.92066 0.92374 0.91762 0.91313 0.91914 0.93757 0.90399 0.75483 0.89179 0.91481 0.91392 0.91385 0.88865 0.92012 0.89299 0.91260 0.89019 0.89457 0.89919 0.83726 0.91576 0.87249 0.77022 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.75 71.98 0.70 -1.49 16 2 C -0.15 -2.68 5.38 30.59 0.16 -2.51 16 3 C 0.08 1.73 2.21 44.91 0.10 1.83 16 4 H 0.10 1.80 7.70 -2.39 -0.02 1.78 16 5 C 0.14 3.24 5.02 86.38 0.43 3.67 16 6 N -0.71 -17.70 5.17 -463.05 -2.39 -20.09 16 7 C 0.52 14.29 5.92 87.66 0.52 14.81 16 8 O -0.58 -19.30 13.84 -3.03 -0.04 -19.34 16 9 C -0.11 -2.37 0.63 -52.84 -0.03 -2.40 16 10 C -0.14 -2.05 8.38 71.98 0.60 -1.45 16 11 C -0.09 -1.75 4.45 30.71 0.14 -1.62 16 12 C -0.16 -3.53 5.81 30.68 0.18 -3.35 16 13 C 0.05 1.18 6.84 72.01 0.49 1.67 16 14 O -0.41 -11.93 10.45 -148.98 -1.56 -13.49 16 15 C 0.07 1.66 5.47 72.01 0.39 2.06 16 16 N -0.67 -19.06 5.23 -495.57 -2.59 -21.65 16 17 C 0.07 2.04 5.99 85.55 0.51 2.55 16 18 C 0.44 19.86 7.83 87.66 0.69 20.55 16 19 O -0.62 -33.44 15.90 -3.09 -0.05 -33.49 16 20 N -0.57 -28.41 5.29 -306.98 -1.62 -30.03 16 21 C -0.33 -18.51 9.68 84.04 0.81 -17.70 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 24 N -0.92 -48.83 13.05 21.66 0.28 -48.54 16 25 Si 0.99 42.53 29.55 68.60 2.03 44.55 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.88 6.55 -2.39 -0.02 0.86 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 1.27 7.50 -2.39 -0.02 1.25 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.08 1.69 6.76 -2.39 -0.02 1.68 16 36 H 0.41 9.98 6.97 -92.71 -0.65 9.33 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.00 7.56 -2.38 -0.02 0.98 16 39 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.07 1.37 8.02 -2.39 -0.02 1.35 16 41 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.06 1.79 5.82 -2.39 -0.01 1.78 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 45 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.09 2.30 7.53 -2.39 -0.02 2.28 16 47 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.34 10.86 8.37 -89.70 -0.75 10.11 16 49 H 0.07 1.79 7.54 -2.39 -0.02 1.77 16 50 H 0.11 2.87 7.92 -2.38 -0.02 2.85 16 51 H 0.40 18.53 7.90 -92.71 -0.73 17.80 16 52 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -71.98 409.80 -0.96 -72.94 By element: Atomic # 1 Polarization: 53.84 SS G_CDS: -1.19 Total: 52.65 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 6.17 Total: 16.49 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -6.32 Total: -120.32 kcal Atomic # 8 Polarization: -64.67 SS G_CDS: -1.65 Total: -66.32 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -71.98 -0.96 -72.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714113350.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.743 kcal (2) G-P(sol) polarization free energy of solvation -71.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds