Wall clock time and date at job start Wed Apr 1 2020 00:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46833 * 2 1 4 4 H 1.08996 * 110.27805 * 52.90399 * 3 2 1 5 5 O 1.43644 * 110.30651 * 290.70577 * 3 2 1 6 6 C 1.43235 * 109.97222 * 216.65650 * 5 3 2 7 7 C 1.54442 * 107.60912 * 1.75359 * 6 5 3 8 8 C 1.54948 * 110.30566 * 174.99714 * 3 2 1 9 9 H 1.08996 * 111.12629 * 37.40332 * 8 3 2 10 10 C 1.50699 * 111.12557 * 273.27533 * 8 3 2 11 11 O 1.21285 * 120.00070 * 334.97656 * 10 8 3 12 12 N 1.34781 * 119.99769 * 154.98418 * 10 8 3 13 13 C 1.46494 * 120.00061 * 355.04877 * 12 10 8 14 14 C 1.46497 * 119.99497 * 175.05225 * 12 10 8 15 15 H 1.08999 * 109.47890 * 359.97438 * 14 12 10 16 16 C 1.52997 * 109.47114 * 239.99404 * 14 12 10 17 17 C 1.53005 * 109.46998 * 119.99830 * 14 12 10 18 18 N 1.46904 * 109.47032 * 304.99690 * 17 14 12 19 19 C 1.46900 * 110.99745 * 179.97438 * 18 17 14 20 20 C 1.50700 * 109.46663 * 179.97438 * 19 18 17 21 21 O 1.21292 * 120.00329 * 0.02562 * 20 19 18 22 22 N 1.34779 * 119.99737 * 179.97438 * 20 19 18 23 23 C 1.37096 * 120.00014 * 180.02562 * 22 20 19 24 24 H 1.08005 * 120.00298 * 0.02562 * 23 22 20 25 25 C 1.38952 * 120.00372 * 180.02562 * 23 22 20 26 26 N 1.31409 * 119.99610 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00265 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47127 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47065 * 120.00190 * 27 25 23 30 30 H 1.48498 * 109.46982 * 240.00115 * 27 25 23 31 31 H 1.09005 * 109.46939 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47645 * 300.00272 * 1 2 3 33 33 H 1.09005 * 109.47147 * 60.00283 * 1 2 3 34 34 H 1.09000 * 109.47645 * 239.99728 * 2 1 3 35 35 H 1.09000 * 109.47213 * 119.99221 * 2 1 3 36 36 H 1.09003 * 109.83321 * 121.22833 * 6 5 3 37 37 H 1.09002 * 109.83784 * 242.10977 * 6 5 3 38 38 H 1.09000 * 110.83042 * 263.12824 * 7 6 5 39 39 H 1.08993 * 110.88615 * 139.48553 * 7 6 5 40 40 H 1.09007 * 109.47128 * 275.23331 * 13 12 10 41 41 H 1.09002 * 109.47249 * 35.23137 * 13 12 10 42 42 H 1.09000 * 109.46890 * 155.23707 * 13 12 10 43 43 H 1.09004 * 109.47408 * 60.00208 * 16 14 12 44 44 H 1.08999 * 109.47229 * 180.02562 * 16 14 12 45 45 H 1.09004 * 109.47605 * 300.00439 * 16 14 12 46 46 H 1.08997 * 109.46825 * 184.99703 * 17 14 12 47 47 H 1.08998 * 109.47158 * 64.99515 * 17 14 12 48 48 H 1.00903 * 110.99790 * 56.04862 * 18 17 14 49 49 H 1.08999 * 109.47310 * 300.00026 * 19 18 17 50 50 H 1.09001 * 109.46824 * 60.00512 * 19 18 17 51 51 H 0.97000 * 119.99826 * 0.02562 * 22 20 19 52 52 H 0.96998 * 120.00263 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5844 2.0043 0.8155 5 8 1.7569 2.0713 -1.2601 6 6 2.8319 2.9457 -1.6229 7 6 3.9126 2.8381 -0.5248 8 6 3.5840 1.4671 0.1267 9 1 4.0370 0.6481 -0.4319 10 6 4.0109 1.4362 1.5716 11 8 3.2621 1.8441 2.4341 12 7 5.2250 0.9553 1.9054 13 6 6.0860 0.3633 0.8787 14 6 5.6834 1.0247 3.2951 15 1 4.9142 1.4937 3.9086 16 6 6.9680 1.8526 3.3676 17 6 5.9578 -0.3887 3.8128 18 7 4.7584 -1.2176 3.6324 19 6 4.9856 -2.5850 4.1189 20 6 3.7362 -3.4035 3.9183 21 8 2.7535 -2.8976 3.4188 22 7 3.7112 -4.6978 4.2931 23 6 2.5748 -5.4426 4.1101 24 1 1.6997 -4.9922 3.6653 25 6 2.5487 -6.7769 4.4970 26 7 3.6132 -7.3248 5.0387 27 14 1.0005 -7.7919 4.2470 28 1 -0.0492 -6.9478 3.6220 29 1 1.3018 -8.9440 3.3599 30 1 0.5185 -8.2908 5.5600 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 3.2492 2.6403 -2.5825 37 1 2.4687 3.9714 -1.6875 38 1 3.8108 3.6462 0.1996 39 1 4.9111 2.8306 -0.9617 40 1 5.8200 -0.6850 0.7417 41 1 5.9509 0.8982 -0.0614 42 1 7.1275 0.4359 1.1918 43 1 6.7727 2.8596 2.9988 44 1 7.3094 1.9038 4.4015 45 1 7.7375 1.3839 2.7540 46 1 6.2131 -0.3446 4.8715 47 1 6.7877 -0.8246 3.2567 48 1 4.4636 -1.2218 2.6674 49 1 5.8087 -3.0359 3.5646 50 1 5.2344 -2.5565 5.1798 51 1 4.4972 -5.1024 4.6923 52 1 3.5950 -8.2562 5.3091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714697198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:26 Heat of formation + Delta-G solvation = -120.342723 kcal Electronic energy + Delta-G solvation = -31532.633052 eV Core-core repulsion = 27339.026430 eV Total energy + Delta-G solvation = -4193.606622 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81308 -39.10463 -38.20934 -36.82873 -34.67767 -33.79647 -33.53510 -32.81742 -31.41227 -31.15307 -28.49658 -27.60879 -27.13353 -25.05931 -24.29855 -23.26948 -22.84670 -21.19767 -20.63301 -19.28936 -18.99289 -17.95101 -17.86753 -16.66799 -16.48306 -16.14866 -15.66889 -15.31462 -15.18555 -14.88287 -14.48586 -14.37470 -14.00583 -13.86505 -13.70080 -13.46394 -13.41696 -13.24369 -13.20421 -13.03433 -12.70958 -12.53473 -12.38460 -12.25120 -11.88848 -11.82522 -11.65295 -11.59708 -11.48076 -11.40667 -11.08835 -11.07584 -10.96347 -10.76062 -10.64284 -10.32927 -10.20910 -9.82477 -9.55126 -9.50256 -8.84424 -8.40937 -8.02520 -7.93822 -6.40456 -3.80928 2.49564 2.77343 3.17472 3.28016 3.35738 3.61605 3.92566 4.06681 4.17218 4.27383 4.39143 4.49684 4.70251 4.81272 4.85461 4.88115 4.97178 4.99901 5.09339 5.17910 5.19610 5.24820 5.26829 5.30898 5.36658 5.38807 5.42103 5.45567 5.53331 5.58355 5.60463 5.67962 5.77920 5.83064 5.89769 5.97821 5.99013 6.02173 6.24247 6.27716 6.30995 6.43040 6.47064 6.89007 7.21948 7.23326 7.56990 7.67157 8.08318 8.10389 8.63141 9.19829 9.56021 10.07791 10.77495 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.003094 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.270309 B = 9047.868249 C =11129.725956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.100 3.900 4 H 0.089 0.911 5 O -0.376 6.376 6 C 0.054 3.946 7 C -0.139 4.139 8 C -0.146 4.146 9 H 0.107 0.893 10 C 0.532 3.468 11 O -0.520 6.520 12 N -0.610 5.610 13 C 0.072 3.928 14 C 0.137 3.863 15 H 0.110 0.890 16 C -0.159 4.159 17 C 0.050 3.950 18 N -0.662 5.662 19 C 0.050 3.950 20 C 0.441 3.559 21 O -0.579 6.579 22 N -0.565 5.565 23 C -0.297 4.297 24 H 0.103 0.897 25 C 0.021 3.979 26 N -0.903 5.903 27 Si 0.928 3.072 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.281 1.281 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.082 0.918 47 H 0.027 0.973 48 H 0.347 0.653 49 H 0.040 0.960 50 H 0.086 0.914 51 H 0.392 0.608 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.781 18.805 -10.648 23.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.043 3.957 4 H 0.107 0.893 5 O -0.295 6.295 6 C -0.023 4.023 7 C -0.177 4.177 8 C -0.167 4.167 9 H 0.125 0.875 10 C 0.320 3.680 11 O -0.395 6.395 12 N -0.345 5.345 13 C -0.071 4.071 14 C 0.034 3.966 15 H 0.128 0.872 16 C -0.217 4.217 17 C -0.080 4.080 18 N -0.295 5.295 19 C -0.083 4.083 20 C 0.226 3.774 21 O -0.463 6.463 22 N -0.202 5.202 23 C -0.427 4.427 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.545 5.545 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.207 1.207 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.046 0.954 48 H 0.167 0.833 49 H 0.058 0.942 50 H 0.104 0.896 51 H 0.225 0.775 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.245 19.342 -9.988 23.277 hybrid contribution 0.878 -1.360 -0.421 1.673 sum 9.123 17.982 -10.408 22.691 Atomic orbital electron populations 1.21657 0.94982 1.01887 1.01764 1.21691 0.97410 0.93786 1.03191 1.22983 0.90903 0.95209 0.86640 0.89281 1.88437 1.42228 1.60412 1.38448 1.23068 0.87156 0.94762 0.97271 1.23055 1.00323 0.95968 0.98383 1.23082 0.99087 1.00050 0.94502 0.87495 1.20036 0.80897 0.77048 0.90044 1.90727 1.51356 1.46672 1.50699 1.47819 1.16953 1.60785 1.08909 1.21828 0.95406 0.98523 0.91382 1.21187 0.97426 0.95813 0.82223 0.87157 1.22112 0.96936 1.00003 1.02682 1.22331 0.91642 0.92808 1.01256 1.59996 1.31689 1.10243 1.27555 1.21689 0.96500 0.88897 1.01166 1.19807 0.89562 0.82991 0.85027 1.90536 1.36210 1.71152 1.48376 1.41867 1.15133 1.08500 1.54687 1.19755 0.92860 0.92023 1.38020 0.87883 1.25253 0.98582 0.97190 0.96958 1.69619 1.28674 1.14184 1.41979 0.85813 0.81297 0.79368 0.77972 1.19178 1.20794 1.20739 0.92431 0.92679 0.92561 0.91510 0.89665 0.91205 0.91264 0.89940 0.89553 0.92438 0.91131 0.90554 0.92152 0.91072 0.92345 0.89976 0.95449 0.83308 0.94164 0.89605 0.77534 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.85 37.15 0.37 -1.64 16 2 C -0.12 -1.73 5.66 -26.73 -0.15 -1.88 16 3 C 0.10 1.30 2.77 -25.70 -0.07 1.23 16 4 H 0.09 1.33 7.19 -51.93 -0.37 0.96 16 5 O -0.38 -4.67 10.81 -35.23 -0.38 -5.05 16 6 C 0.05 0.47 7.80 37.91 0.30 0.77 16 7 C -0.14 -1.14 6.45 -24.75 -0.16 -1.30 16 8 C -0.15 -1.56 1.92 -89.52 -0.17 -1.74 16 9 H 0.11 1.00 6.58 -51.93 -0.34 0.66 16 10 C 0.53 7.00 6.86 -10.98 -0.08 6.92 16 11 O -0.52 -8.98 15.17 5.55 0.08 -8.90 16 12 N -0.61 -6.59 1.83 -173.93 -0.32 -6.91 16 13 C 0.07 0.55 8.95 59.84 0.54 1.08 16 14 C 0.14 1.51 2.94 -67.93 -0.20 1.32 16 15 H 0.11 1.54 6.91 -51.93 -0.36 1.19 16 16 C -0.16 -1.22 9.18 37.16 0.34 -0.88 16 17 C 0.05 0.60 5.03 -3.82 -0.02 0.59 16 18 N -0.66 -11.10 6.12 -115.05 -0.70 -11.80 16 19 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 20 C 0.44 10.59 7.82 -10.98 -0.09 10.50 16 21 O -0.58 -16.03 15.78 5.55 0.09 -15.94 16 22 N -0.56 -14.47 5.29 -10.96 -0.06 -14.53 16 23 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 24 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 27 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.72 7.99 -51.93 -0.42 0.31 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.73 8.03 -51.93 -0.42 0.31 16 39 H 0.09 0.49 8.04 -51.93 -0.42 0.07 16 40 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.07 0.40 6.49 -51.93 -0.34 0.07 16 42 H 0.08 0.46 6.44 -51.93 -0.33 0.12 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.38 6.67 -51.93 -0.35 0.03 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.03 0.29 7.84 -51.93 -0.41 -0.12 16 48 H 0.35 6.15 7.56 -39.29 -0.30 5.85 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 51 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 52 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 416.29 15.07 6.27 6.27 Total: -1.00 -34.24 416.29 -7.93 -42.17 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -8.95 Total: 14.62 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 0.33 Total: 7.81 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.36 Total: -57.26 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.21 Total: -29.89 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.24 -7.93 -42.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714697198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.168 kcal (2) G-P(sol) polarization free energy of solvation -34.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds