Wall clock time and date at job start Wed Apr 1 2020 00:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46833 * 2 1 4 4 H 1.08996 * 110.27805 * 52.90399 * 3 2 1 5 5 O 1.43644 * 110.30651 * 290.70577 * 3 2 1 6 6 C 1.43235 * 109.97222 * 216.65650 * 5 3 2 7 7 C 1.54442 * 107.60912 * 1.75359 * 6 5 3 8 8 C 1.54948 * 110.30566 * 174.99714 * 3 2 1 9 9 H 1.08996 * 111.12629 * 37.40332 * 8 3 2 10 10 C 1.50699 * 111.12557 * 273.27533 * 8 3 2 11 11 O 1.21285 * 120.00070 * 334.97656 * 10 8 3 12 12 N 1.34781 * 119.99769 * 154.98418 * 10 8 3 13 13 C 1.46494 * 120.00061 * 355.04877 * 12 10 8 14 14 C 1.46497 * 119.99497 * 175.05225 * 12 10 8 15 15 H 1.08999 * 109.47890 * 359.97438 * 14 12 10 16 16 C 1.52997 * 109.47114 * 239.99404 * 14 12 10 17 17 C 1.53005 * 109.46998 * 119.99830 * 14 12 10 18 18 N 1.46904 * 109.47032 * 304.99690 * 17 14 12 19 19 C 1.46900 * 110.99745 * 179.97438 * 18 17 14 20 20 C 1.50700 * 109.46663 * 179.97438 * 19 18 17 21 21 O 1.21292 * 120.00329 * 0.02562 * 20 19 18 22 22 N 1.34779 * 119.99737 * 179.97438 * 20 19 18 23 23 C 1.37096 * 120.00014 * 180.02562 * 22 20 19 24 24 H 1.08005 * 120.00298 * 0.02562 * 23 22 20 25 25 C 1.38952 * 120.00372 * 180.02562 * 23 22 20 26 26 N 1.31409 * 119.99610 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00265 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47127 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47065 * 120.00190 * 27 25 23 30 30 H 1.48498 * 109.46982 * 240.00115 * 27 25 23 31 31 H 1.09005 * 109.46939 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47645 * 300.00272 * 1 2 3 33 33 H 1.09005 * 109.47147 * 60.00283 * 1 2 3 34 34 H 1.09000 * 109.47645 * 239.99728 * 2 1 3 35 35 H 1.09000 * 109.47213 * 119.99221 * 2 1 3 36 36 H 1.09003 * 109.83321 * 121.22833 * 6 5 3 37 37 H 1.09002 * 109.83784 * 242.10977 * 6 5 3 38 38 H 1.09000 * 110.83042 * 263.12824 * 7 6 5 39 39 H 1.08993 * 110.88615 * 139.48553 * 7 6 5 40 40 H 1.09007 * 109.47128 * 275.23331 * 13 12 10 41 41 H 1.09002 * 109.47249 * 35.23137 * 13 12 10 42 42 H 1.09000 * 109.46890 * 155.23707 * 13 12 10 43 43 H 1.09004 * 109.47408 * 60.00208 * 16 14 12 44 44 H 1.08999 * 109.47229 * 180.02562 * 16 14 12 45 45 H 1.09004 * 109.47605 * 300.00439 * 16 14 12 46 46 H 1.08997 * 109.46825 * 184.99703 * 17 14 12 47 47 H 1.08998 * 109.47158 * 64.99515 * 17 14 12 48 48 H 1.00903 * 110.99790 * 56.04862 * 18 17 14 49 49 H 1.08999 * 109.47310 * 300.00026 * 19 18 17 50 50 H 1.09001 * 109.46824 * 60.00512 * 19 18 17 51 51 H 0.97000 * 119.99826 * 0.02562 * 22 20 19 52 52 H 0.96998 * 120.00263 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5844 2.0043 0.8155 5 8 1.7569 2.0713 -1.2601 6 6 2.8319 2.9457 -1.6229 7 6 3.9126 2.8381 -0.5248 8 6 3.5840 1.4671 0.1267 9 1 4.0370 0.6481 -0.4319 10 6 4.0109 1.4362 1.5716 11 8 3.2621 1.8441 2.4341 12 7 5.2250 0.9553 1.9054 13 6 6.0860 0.3633 0.8787 14 6 5.6834 1.0247 3.2951 15 1 4.9142 1.4937 3.9086 16 6 6.9680 1.8526 3.3676 17 6 5.9578 -0.3887 3.8128 18 7 4.7584 -1.2176 3.6324 19 6 4.9856 -2.5850 4.1189 20 6 3.7362 -3.4035 3.9183 21 8 2.7535 -2.8976 3.4188 22 7 3.7112 -4.6978 4.2931 23 6 2.5748 -5.4426 4.1101 24 1 1.6997 -4.9922 3.6653 25 6 2.5487 -6.7769 4.4970 26 7 3.6132 -7.3248 5.0387 27 14 1.0005 -7.7919 4.2470 28 1 -0.0492 -6.9478 3.6220 29 1 1.3018 -8.9440 3.3599 30 1 0.5185 -8.2908 5.5600 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 3.2492 2.6403 -2.5825 37 1 2.4687 3.9714 -1.6875 38 1 3.8108 3.6462 0.1996 39 1 4.9111 2.8306 -0.9617 40 1 5.8200 -0.6850 0.7417 41 1 5.9509 0.8982 -0.0614 42 1 7.1275 0.4359 1.1918 43 1 6.7727 2.8596 2.9988 44 1 7.3094 1.9038 4.4015 45 1 7.7375 1.3839 2.7540 46 1 6.2131 -0.3446 4.8715 47 1 6.7877 -0.8246 3.2567 48 1 4.4636 -1.2218 2.6674 49 1 5.8087 -3.0359 3.5646 50 1 5.2344 -2.5565 5.1798 51 1 4.4972 -5.1024 4.6923 52 1 3.5950 -8.2562 5.3091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714697198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:26 Heat of formation + Delta-G solvation = -145.709805 kcal Electronic energy + Delta-G solvation = -31533.733051 eV Core-core repulsion = 27339.026430 eV Total energy + Delta-G solvation = -4194.706621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74459 -40.25797 -39.85073 -37.93936 -36.16759 -35.54331 -34.60325 -33.77069 -33.26274 -32.20191 -29.39566 -28.98315 -27.85601 -26.69930 -25.39017 -24.56041 -23.74156 -22.11939 -21.62869 -21.07470 -20.00611 -19.86585 -18.84522 -17.96770 -17.57473 -17.23528 -16.98958 -16.47516 -16.32840 -16.23403 -15.94338 -15.70607 -15.38370 -15.11133 -14.93328 -14.52399 -14.41462 -14.28882 -14.17845 -14.13193 -13.96767 -13.54895 -13.46215 -13.17702 -13.04353 -13.02744 -12.95920 -12.79454 -12.69760 -12.52669 -12.43396 -12.39084 -12.13416 -11.96270 -11.85565 -11.81581 -11.65498 -11.53149 -10.82749 -10.47109 -10.38141 -10.02820 -9.69385 -9.29105 -8.48574 -5.96985 1.34593 1.40033 1.52481 1.54253 1.93092 2.03366 2.27682 2.74717 2.90307 3.18619 3.38015 3.46545 3.52111 3.59874 3.91959 4.00618 4.10376 4.14394 4.15420 4.19882 4.25266 4.27839 4.33557 4.35555 4.44851 4.46489 4.54153 4.61479 4.67564 4.69804 4.73336 4.75257 4.81917 4.82222 4.88137 4.96042 5.02951 5.07259 5.11481 5.19567 5.29033 5.29584 5.39524 5.60956 5.88114 6.00839 6.10335 6.31730 6.38839 6.58915 7.11491 7.15654 7.54433 8.10680 8.69111 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.003094 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.270309 B = 9047.868249 C =11129.725956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.103 3.897 4 H 0.059 0.941 5 O -0.392 6.392 6 C 0.046 3.954 7 C -0.128 4.128 8 C -0.141 4.141 9 H 0.126 0.874 10 C 0.525 3.475 11 O -0.576 6.576 12 N -0.605 5.605 13 C 0.063 3.937 14 C 0.136 3.864 15 H 0.072 0.928 16 C -0.147 4.147 17 C 0.052 3.948 18 N -0.685 5.685 19 C 0.066 3.934 20 C 0.435 3.565 21 O -0.623 6.623 22 N -0.572 5.572 23 C -0.333 4.333 24 H 0.075 0.925 25 C -0.011 4.011 26 N -0.919 5.919 27 Si 0.990 3.010 28 H -0.276 1.276 29 H -0.268 1.268 30 H -0.271 1.271 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.055 0.945 48 H 0.338 0.662 49 H 0.070 0.930 50 H 0.103 0.897 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.580 18.921 -12.054 25.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C 0.045 3.955 4 H 0.077 0.923 5 O -0.312 6.312 6 C -0.030 4.030 7 C -0.165 4.165 8 C -0.162 4.162 9 H 0.144 0.856 10 C 0.314 3.686 11 O -0.455 6.455 12 N -0.338 5.338 13 C -0.078 4.078 14 C 0.032 3.968 15 H 0.090 0.910 16 C -0.205 4.205 17 C -0.077 4.077 18 N -0.318 5.318 19 C -0.066 4.066 20 C 0.223 3.777 21 O -0.509 6.509 22 N -0.209 5.209 23 C -0.462 4.462 24 H 0.093 0.907 25 C -0.211 4.211 26 N -0.560 5.560 27 Si 0.814 3.186 28 H -0.200 1.200 29 H -0.193 1.193 30 H -0.196 1.196 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.141 0.859 40 H 0.068 0.932 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.074 0.926 48 H 0.157 0.843 49 H 0.087 0.913 50 H 0.122 0.878 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.124 19.448 -11.393 25.135 hybrid contribution 0.024 -1.360 0.017 1.360 sum 11.148 18.088 -11.376 24.101 Atomic orbital electron populations 1.21646 0.95083 1.01647 1.01771 1.21601 0.97431 0.94684 1.02044 1.22702 0.92614 0.93833 0.86323 0.92330 1.88404 1.44104 1.61097 1.37608 1.23363 0.86516 0.94784 0.98366 1.23069 1.02085 0.93678 0.97715 1.23062 0.97281 1.02459 0.93397 0.85616 1.20494 0.81119 0.76443 0.90579 1.90702 1.53087 1.49386 1.52281 1.47915 1.16582 1.59692 1.09579 1.22118 0.95987 0.98153 0.91584 1.21167 0.98071 0.95581 0.81965 0.90976 1.22023 0.95224 0.99326 1.03925 1.22451 0.90476 0.92373 1.02416 1.59979 1.34777 1.09975 1.27097 1.21544 0.93581 0.88787 1.02735 1.20932 0.91042 0.82689 0.83053 1.90513 1.38568 1.71930 1.49891 1.41914 1.14676 1.09148 1.55211 1.19667 0.93323 0.93230 1.40009 0.90659 1.26002 1.01552 0.97506 0.96034 1.69667 1.29891 1.14810 1.41659 0.84909 0.77478 0.77813 0.78377 1.20048 1.19283 1.19586 0.92751 0.93831 0.91323 0.90172 0.93023 0.88716 0.90285 0.90980 0.85852 0.93203 0.88703 0.88028 0.92183 0.90049 0.90074 0.89061 0.92649 0.84283 0.91254 0.87850 0.76938 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 9.85 71.98 0.71 -3.52 16 2 C -0.12 -3.57 5.66 30.59 0.17 -3.40 16 3 C 0.10 2.80 2.77 31.26 0.09 2.89 16 4 H 0.06 1.94 7.19 -2.39 -0.02 1.92 16 5 O -0.39 -9.56 10.81 -148.98 -1.61 -11.17 16 6 C 0.05 0.70 7.80 72.47 0.56 1.27 16 7 C -0.13 -1.81 6.45 31.88 0.21 -1.61 16 8 C -0.14 -2.94 1.92 -10.08 -0.02 -2.96 16 9 H 0.13 2.12 6.58 -2.39 -0.02 2.11 16 10 C 0.53 14.11 6.86 87.66 0.60 14.71 16 11 O -0.58 -21.41 15.17 -3.04 -0.05 -21.46 16 12 N -0.61 -12.43 1.83 -822.59 -1.51 -13.93 16 13 C 0.06 0.77 8.95 127.77 1.14 1.91 16 14 C 0.14 2.87 2.94 44.99 0.13 3.01 16 15 H 0.07 2.11 6.91 -2.39 -0.02 2.09 16 16 C -0.15 -1.85 9.18 71.98 0.66 -1.19 16 17 C 0.05 1.16 5.03 86.30 0.43 1.59 16 18 N -0.69 -22.82 6.12 -517.92 -3.17 -25.99 16 19 C 0.07 2.30 6.17 85.56 0.53 2.83 16 20 C 0.44 21.37 7.82 87.66 0.69 22.06 16 21 O -0.62 -36.10 15.78 -3.07 -0.05 -36.15 16 22 N -0.57 -29.90 5.29 -306.98 -1.62 -31.52 16 23 C -0.33 -19.31 9.68 84.04 0.81 -18.50 16 24 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 25 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 26 N -0.92 -49.90 13.05 21.66 0.28 -49.62 16 27 Si 0.99 43.71 29.55 68.60 2.03 45.74 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 29 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 30 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 31 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.82 7.99 -2.38 -0.02 1.80 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.20 8.03 -2.39 -0.02 1.18 16 39 H 0.12 0.85 8.04 -2.39 -0.02 0.83 16 40 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.09 0.70 6.49 -2.39 -0.02 0.69 16 42 H 0.10 0.74 6.44 -2.39 -0.02 0.73 16 43 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 0.68 6.67 -2.38 -0.02 0.66 16 46 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.06 0.95 7.84 -2.39 -0.02 0.93 16 48 H 0.34 12.16 7.56 -89.69 -0.68 11.48 16 49 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 51 H 0.40 19.52 7.90 -92.71 -0.73 18.78 16 52 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -79.62 416.29 1.01 -78.61 By element: Atomic # 1 Polarization: 47.05 SS G_CDS: -0.49 Total: 46.56 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 7.19 Total: 18.94 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -6.02 Total: -121.07 kcal Atomic # 8 Polarization: -67.08 SS G_CDS: -1.70 Total: -68.78 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -79.62 1.01 -78.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714697198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.100 kcal (2) G-P(sol) polarization free energy of solvation -79.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds